mRNA_S-ischiensis_contig9.20776.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20776.1
Unique NamemRNA_S-ischiensis_contig9.20776.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20776.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.970e-5
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    4 QLLQRGGLQ-EGSRVVVLRCALGWLQLGAISWQTLLASPLLSVALESLTVANGGACDVAAEVLMACAEAFPHPPAAQALLPRILLLREAL 270
            QL++ GGL  EG+    LRCAL W+QL A+    +LASP++++A+E+L   +  ACD A E++               +LPR+L   +AL
Sbjct:  222 QLMEPGGLPAEGAVGATLRCALAWMQLEAVERADMLASPVMTLAVEALE--SPEACDDACELVXXXXXXXXXXXXXXXMLPRVLTRAQAL 309
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSA2_ECTSI3.970e-537.78Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3148341..3149908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20776.1prot_S-ischiensis_contig9.20776.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3148341..3149906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.2965703-CDS-S-ischiensis_contig9:3148340..31483961622817401.2965703-CDS-S-ischiensis_contig9:3148340..3148396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3148341..3148396 +
1695741086.7810318-CDS-S-ischiensis_contig9:3148340..31483961695741086.7810318-CDS-S-ischiensis_contig9:3148340..3148396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3148341..3148396 +
1622817401.309938-CDS-S-ischiensis_contig9:3149459..31496341622817401.309938-CDS-S-ischiensis_contig9:3149459..3149634Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3149460..3149634 +
1695741086.793033-CDS-S-ischiensis_contig9:3149459..31496341695741086.793033-CDS-S-ischiensis_contig9:3149459..3149634Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3149460..3149634 +
1622817401.3244848-CDS-S-ischiensis_contig9:3149864..31499061622817401.3244848-CDS-S-ischiensis_contig9:3149864..3149906Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3149865..3149906 +
1695741086.8056235-CDS-S-ischiensis_contig9:3149864..31499061695741086.8056235-CDS-S-ischiensis_contig9:3149864..3149906Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3149865..3149906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20776.1

>prot_S-ischiensis_contig9.20776.1 ID=prot_S-ischiensis_contig9.20776.1|Name=mRNA_S-ischiensis_contig9.20776.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
GQLLQRGGLQEGSRVVVLRCALGWLQLGAISWQTLLASPLLSVALESLTV
ANGGACDVAAEVLMACAEAFPHPPAAQALLPRILLLREALR
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mRNA from alignment at S-ischiensis_contig9:3148341..3149908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20776.1 ID=mRNA_S-ischiensis_contig9.20776.1|Name=mRNA_S-ischiensis_contig9.20776.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1568bp|location=Sequence derived from alignment at S-ischiensis_contig9:3148341..3149908+ (Schizocladia ischiensis KU_0333)
GGGCAGCTGCTGCAGAGGGGGGGGCTGCAAGAGGGATCGAGGGTGGTGGT
GCTCAGGTGAGGGGGGGGGGGGCGATGATGCGAATAGTTGTATGGCAGTT
GGGGACGGGCCCGGAACTCGCAAGCCATCGAACGCAATCGACGAATAAAT
GTTTGTATAGAGAGCGTATAGCTCCGTCTCGATCGAGGTGCGTGTTCGGT
GGCCCCGGGACTACGGCAAGCACAACGTGAGTACATATATATACATATAC
TGTACGTAGTACTTCAAAGTATTATATCCATGTACTCACTCACGTTGTGC
TTGCCGTAGTCCCGAGTAGCAATAAACAAACGCCCGGAAGAAACTGGGTG
GCCCGGGCGCCCGGGCCGCCCATCGGCATCGCGAAGTTGGGCGGCGCCTG
ACCGATGTCCAAGCCCGGGCGGTGAAGTACCCGCAAATGGCCCCGCAGGG
CGAAACTTTTGGCCTCGGCCGCCCAAATGGGGGTTCCCGGGCACATTTTG
GGCGGAGGAGCCACAAAATTAGGCGGGGGTGCCGCCTACGGCGCCACAAA
AGTTAGGCGGCTTTGGGCCCAAGACCGATTTTTTAGGCGGGCCGCCCAAA
AATACCCCAGCTTTTCTATCACTGGTCCCGAGACCATTGACACCCATAGC
GCCTCGACCGAGACGGAGCAGGCCCCCCTCCCTCCCCACACCCGGCAGAG
CCATAACAGGTGTGGAGGGGGGGGCACGCCTCGGCCAGGGCCGGAGGGTG
GAGGGGTGACTTGGAAGTACTGTAGTAGGGACACGAAATATTTGGAGCGC
GGATGCAATAGTGCTTTGAAGTGCTGTTAACAGAAAGAGCTAGTGGGGAA
TGAGGCGCCAACACCAGCGGCCGCCTAACGGATCGTGGTTTGGGGCGCTC
AGGTCGGAGGATGATTACTCATGTCTCCCCGCTGCTGTCAGATGCACGGA
TGATTTTTGTCATGTCATGTCATGTCATGTCGTGTTGTTTTACGGTGTTT
TCGTGCACACATCACATCACATACATTGCATCACAATGCATGACGCGCAC
ACACAACCTCCCTGCCCCCCCCCACACACACACACACCGAACGCCCTCCC
CCCGGCCGGGGGAGAGCAGGTGCGCATTGGGCTGGCTTCAGCTGGGTGCG
ATCTCCTGGCAGACGCTCTTGGCCTCCCCGCTGCTGTCCGTAGCGCTGGA
GTCTCTGACGGTGGCAAACGGGGGGGCCTGCGACGTGGCCGCAGAGGTGT
TGATGGCGTGCGCGGAGGCCTTCCCACACCCGCCTGCGGCGCAGGTGAGA
AAAAAAAAAGCGTGGTGATTCATAGACATTGTAACAAGGTACAATTGCGC
GCGTGTGAGATTGAGTGTTGTCGTACTATTGTAGTGAAAAAACTTGGCCC
GTCCCGCCCTTCCCCTTCTTTCTTTCTTCGGAGCGCCTCTGTTGGCTGTG
AAGGGGCAACATCTCTCCGAGAAATGCGGTAAGCTCACCGCTCCTTGAAT
GCCCCCCAAACGAACGCCGTCTAGGCCCTGCTCCCGCGAATCCTCCTCCT
CCGTGAGGCTTTACGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3148341..3149908+

>mRNA_S-ischiensis_contig9.20776.1 ID=mRNA_S-ischiensis_contig9.20776.1|Name=mRNA_S-ischiensis_contig9.20776.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig9:3148341..3149908+ (Schizocladia ischiensis KU_0333)
GGGCAGCTGCTGCAGAGGGGGGGGCTGCAAGAGGGATCGAGGGTGGTGGT
GCTCAGGGGCAGCTGCTGCAGAGGGGGGGGCTGCAAGAGGGATCGAGGGT
GGTGGTGCTCAGGTGCGCATTGGGCTGGCTTCAGCTGGGTGCGATCTCCT
GGCAGACGCTCTTGGCCTCCCCGCTGCTGTCCGTAGCGCTGGAGTCTCTG
ACGGTGGCAAACGGGGGGGCCTGCGACGTGGCCGCAGAGGTGTTGATGGC
GTGCGCGGAGGCCTTCCCACACCCGCCTGCGGCGCAGGTGCGCATTGGGC
TGGCTTCAGCTGGGTGCGATCTCCTGGCAGACGCTCTTGGCCTCCCCGCT
GCTGTCCGTAGCGCTGGAGTCTCTGACGGTGGCAAACGGGGGGGCCTGCG
ACGTGGCCGCAGAGGTGTTGATGGCGTGCGCGGAGGCCTTCCCACACCCG
CCTGCGGCGCAGGCCCTGCTCCCGCGAATCCTCCTCCTCCGTGAGGCTTT
ACGAGCCCTGCTCCCGCGAATCCTCCTCCTCCGTGAGGCTTTACGA
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