prot_S-ischiensis_contig9.20776.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20776.1
Unique Nameprot_S-ischiensis_contig9.20776.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length91
Homology
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BLAST of mRNA_S-ischiensis_contig9.20776.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.970e-5
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:    2 QLLQRGGLQ-EGSRVVVLRCALGWLQLGAISWQTLLASPLLSVALESLTVANGGACDVAAEVLMACAEAFPHPPAAQALLPRILLLREAL 90
            QL++ GGL  EG+    LRCAL W+QL A+    +LASP++++A+E+L   +  ACD A E++               +LPR+L   +AL
Sbjct:  222 QLMEPGGLPAEGAVGATLRCALAWMQLEAVERADMLASPVMTLAVEALE--SPEACDDACELVXXXXXXXXXXXXXXXMLPRVLTRAQAL 309
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSA2_ECTSI3.970e-537.78Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..91
e-value: 4.9E-9
score: 36.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3148341..3149906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20776.1mRNA_S-ischiensis_contig9.20776.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 3148341..3149908 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20776.1 ID=prot_S-ischiensis_contig9.20776.1|Name=mRNA_S-ischiensis_contig9.20776.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
GQLLQRGGLQEGSRVVVLRCALGWLQLGAISWQTLLASPLLSVALESLTV
ANGGACDVAAEVLMACAEAFPHPPAAQALLPRILLLREALR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like