mRNA_S-ischiensis_contig9.20710.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20710.1
Unique NamemRNA_S-ischiensis_contig9.20710.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2732004..2734232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog157072.XP_008870473.1
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-23_003610.1
Exons2
Model size1657
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20710.1prot_S-ischiensis_contig9.20710.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2732007..2733040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.9383023-UTR-S-ischiensis_contig9:2732003..27320061622817396.9383023-UTR-S-ischiensis_contig9:2732003..2732006Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2732004..2732006 +
1695741083.3387876-UTR-S-ischiensis_contig9:2732003..27320061695741083.3387876-UTR-S-ischiensis_contig9:2732003..2732006Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2732004..2732006 +
1622817396.9767773-UTR-S-ischiensis_contig9:2733040..27342321622817396.9767773-UTR-S-ischiensis_contig9:2733040..2734232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2733041..2734232 +
1695741083.3755975-UTR-S-ischiensis_contig9:2733040..27342321695741083.3755975-UTR-S-ischiensis_contig9:2733040..2734232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2733041..2734232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.949814-CDS-S-ischiensis_contig9:2732006..27320991622817396.949814-CDS-S-ischiensis_contig9:2732006..2732099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2732007..2732099 +
1695741083.3553696-CDS-S-ischiensis_contig9:2732006..27320991695741083.3553696-CDS-S-ischiensis_contig9:2732006..2732099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2732007..2732099 +
1622817396.9616706-CDS-S-ischiensis_contig9:2732671..27330401622817396.9616706-CDS-S-ischiensis_contig9:2732671..2733040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2732672..2733040 +
1695741083.366636-CDS-S-ischiensis_contig9:2732671..27330401695741083.366636-CDS-S-ischiensis_contig9:2732671..2733040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2732672..2733040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20710.1

>prot_S-ischiensis_contig9.20710.1 ID=prot_S-ischiensis_contig9.20710.1|Name=mRNA_S-ischiensis_contig9.20710.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=154bp
MYVHYKEYVSEPMDLSELGRGLGRGLYDDAEGRALFAEHVRLIGTNCEAF
NGAKATITQSAYRLVDMITRLYSEWVEGAGADVALEHLRDDAATCPVCDE
ALPAAAAGGAAAAAVAALECSVCVKKYHAGCVKPKGPAAARGAAWMCPDC
EKL*
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mRNA from alignment at S-ischiensis_contig9:2732004..2734232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20710.1 ID=mRNA_S-ischiensis_contig9.20710.1|Name=mRNA_S-ischiensis_contig9.20710.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2229bp|location=Sequence derived from alignment at S-ischiensis_contig9:2732004..2734232+ (Schizocladia ischiensis KU_0333)
GACATGTATGTGCACTACAAGGAGTACGTGTCGGAGCCCATGGACCTGAG
CGAGCTGGGGCGGGGGCTGGGGCGGGGGCTGTACGACGACGCAGAGGTGA
GCGTTGTCAGAAAGAACACCTGTGTCCGTGATGTTAAAAACACCACACGC
GTGGCCGAATGTCCCCTGTACAAGACTCCTTACAGCTCCTTGTAGCCCTC
TGAGTCTAGGGGATATCTCTAGGTACACTCGCCGCCCGTTATATACATTT
TGCATGCAATAACCTTCCGCCGATTACGGTAAGTACACGTAGACCCCTGC
AATAGGCAGTCCTGTCCTCCCTGCCTGGCCGCTTTGTTGAGTTCGGCTAG
GTGATCCCCCGCCCGCCATCGTCCCGAACCCACCAGAGGAAACAATGGCT
GGCCCCATTGGGGTGACCGCTGTGGGAACATGCAGTCAACGCCACGCTCT
GAAACAACCAGAGTAGAGCAGTTTTGTGCAAGAGGACAACAAGCGAGTGG
GATAAAAGAGGTATTCCTACATGCGCGAGTTCAGGGCCCCAAAGTAGAGC
AGTTATACACAGCGCACACACCCACATACCCGTCGTCGTCATCGCTGTCG
TCGCCGTCCCTCCGCCCCATCGGCCCGCCCGCCCGCCCGCCCGCCCGCCC
ACCATCGCGACCGACCAGGGCCGGGCGCTCTTTGCCGAGCACGTGCGGCT
CATCGGCACCAACTGCGAGGCCTTCAACGGGGCCAAGGCCACCATCACGC
AGTCCGCCTACCGCCTGGTGGACATGATCACCCGCCTTTACTCCGAGTGG
GTGGAGGGGGCCGGCGCCGACGTCGCTTTGGAACACCTTCGGGATGATGC
CGCCACCTGCCCCGTCTGCGACGAGGCCCTACCGGCGGCGGCCGCGGGGG
GGGCGGCGGCGGCGGCGGTGGCGGCCCTGGAATGCAGCGTGTGTGTGAAA
AAGTACCACGCCGGGTGCGTCAAGCCCAAGGGCCCGGCGGCGGCGAGGGG
TGCCGCATGGATGTGCCCTGACTGCGAGAAGCTTTAAAATGAGCTTGAGG
CCCGGGCCGGTTTGCCCGGGGCGCCGCCGGTGTCCGAGTCCGTGTCGAAA
CCGGGGCCGGTGGCGTCCTTCTTAAGCTCTTCCTCCTCCACTCCGAGTCA
GCGTGTAGCTGTTGGGGTGCCTGGGGGTCCCCAGCGTACGTGAAGCCTGA
GAAGCCGAGGGTCCTTCGTCCTGCGGTGTGGCCCTTGTACGAGAGCTGCT
GCTGCTGCAGCCCATGGGGCACGCCCGCTGACAATTTCATCCCGTTTTCG
GTTGGGGGTAGAAATAGGCTGAATAGTAACTACAAGTACACTGCTACGTA
CAATCCACTTTCGGTTGGGGGTATAGGCTTCAAATAGTAGTTGCACTGCT
ACACAATCCGCTCTTTTTTTTTAACACACGGTCTTTTCCCGCCGCGTGCG
CCAGCGGTCAGTCATGTGAGATGCACTTAATCATGATGCATATGGGCCGG
GAACGTTGTGGGCCTGGCGGCGGCATTGGCAAAGCCCGAGGACGCCCTTG
TCCAGATCGCGGAGACGGCCTCCCCTGAGCCGACCCTCCTCAACCTGAGT
ACCGTAATCGTCGGAGAGATCTTGCCCCCACATGCCCATTTTCAGGAGAA
CGTTTCTCGCCGAATACTGGTCGGATTCGCGCAGCAAACTCGGAAAATCT
CCCTCAGGACCCGGGGGAACTTTTCGGAGAGTTATCGGGACAATTCAGGA
CCTTGCCGGCAAGAAATGTTGCCCTGAAAATTGACCCGTGGGGGCAACAT
CTCTCCGACGATTACGGCAAGCAACACTCGGCCGCCCAGGCCGGCACCGG
GAGGAAGGACCGGCCGTGGGCCCCGGCCAGGGCCGTCGTACCCGTCACCT
GCATGCCCGGCGGCGAGAGCTTGGAGGGCAGCCGCCGGCCGCGGTTTGGA
GAGCACATAGTGAACCGACATCGTCGGTCGCGGCCCGGGCCCTGTTTAAA
ACGCCATAGTTTGTGCCGCCGGTCTTAATGTTTGGAGTGCTGTTAGACTC
GGACGCGCCTCCAGCTTGTGATCAGGCTCCAGCTGCCGCCGCTGTCGTCG
TCGCCGCCGCCGCGAGCTGTGCAGTAGGCGGCTGGTGCAGGGCACTGCCA
GTGGCAAACGCCCGGGCCCACTGCGCTTGAGGCGTGTCCTGGTCTGCTGG
CAGGAGAGCTGTCCCTTCCTGAGTCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2732004..2734232+

>mRNA_S-ischiensis_contig9.20710.1 ID=mRNA_S-ischiensis_contig9.20710.1|Name=mRNA_S-ischiensis_contig9.20710.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig9:2732004..2734232+ (Schizocladia ischiensis KU_0333)
ATGTATGTGCACTACAAGGAGTACGTGTCGGAGCCCATGGACCTGAGCGA
GCTGGGGCGGGGGCTGGGGCGGGGGCTGTACGACGACGCAGAGATGTATG
TGCACTACAAGGAGTACGTGTCGGAGCCCATGGACCTGAGCGAGCTGGGG
CGGGGGCTGGGGCGGGGGCTGTACGACGACGCAGAGGGCCGGGCGCTCTT
TGCCGAGCACGTGCGGCTCATCGGCACCAACTGCGAGGCCTTCAACGGGG
CCAAGGCCACCATCACGCAGTCCGCCTACCGCCTGGTGGACATGATCACC
CGCCTTTACTCCGAGTGGGTGGAGGGGGCCGGCGCCGACGTCGCTTTGGA
ACACCTTCGGGATGATGCCGCCACCTGCCCCGTCTGCGACGAGGCCCTAC
CGGCGGCGGCCGCGGGGGGGGCGGCGGCGGCGGCGGTGGCGGCCCTGGAA
TGCAGCGTGTGTGTGAAAAAGTACCACGCCGGGTGCGTCAAGCCCAAGGG
CCCGGCGGCGGCGAGGGGTGCCGCATGGATGTGCCCTGACTGCGAGAAGC
TTTAAGGCCGGGCGCTCTTTGCCGAGCACGTGCGGCTCATCGGCACCAAC
TGCGAGGCCTTCAACGGGGCCAAGGCCACCATCACGCAGTCCGCCTACCG
CCTGGTGGACATGATCACCCGCCTTTACTCCGAGTGGGTGGAGGGGGCCG
GCGCCGACGTCGCTTTGGAACACCTTCGGGATGATGCCGCCACCTGCCCC
GTCTGCGACGAGGCCCTACCGGCGGCGGCCGCGGGGGGGGCGGCGGCGGC
GGCGGTGGCGGCCCTGGAATGCAGCGTGTGTGTGAAAAAGTACCACGCCG
GGTGCGTCAAGCCCAAGGGCCCGGCGGCGGCGAGGGGTGCCGCATGGATG
TGCCCTGACTGCGAGAAGCTTTAA
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