mRNA_S-ischiensis_contig9.20700.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20700.1
Unique NamemRNA_S-ischiensis_contig9.20700.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20700.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.870e-7
Identity = 63/226 (27.88%), Postives = 98/226 (43.36%), Query Frame = 1 
Query:    7 EGRGAE--GLPHPPVRAL-LGGALVESLGRVDKRPGFHDRDYVYPVGFSAIRLMMQASDSRARRVRFSILERRGRPAFRAALLCPTNDAGEREGGSQMASAGCGAEEFVLEEDTQEAAWWGMCEHLGIAEEGDQPEKKVLTKGSVHGTESGDSGMFFSTRLHEVVEGLPGTEGCAEYQFLGERAGENTRRERQIR---NKDGKFDLEALKTRLEKSYWRSRPDEVK 666
            EG+G +  G   P    L +   L+E+LGRVD R GFH    ++P G+ AIR++M     RA R R SI      PAFR  L   +   G+                   E  TQ+  +  + + L  A  G++       K SV+G        FF++ +  ++EG+P +E C +Y F   R        +++        +   E ++  LEKS+W   P+  K
Sbjct:  536 EGKGTKLLGKREPGAAPLPVADILIENLGRVDTRFGFHSSKTIFPPGYRAIRMVMDGRTLRAIRARCSIYVENDAPAFRIELDESSIPPGKAT---------------TFEATTQKECFNQVFKALDTA--GNR------AKESVYG-----GPQFFNSAVKALIEGMPRSEECDKYVFAAMRGRGTAPMFKKVAVDWQAAAERAEEKMRHELEKSWWTGMPEAEK 733
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE4.870e-727.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2706668..2710834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size801
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20700.1prot_S-ischiensis_contig9.20700.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2706668..2710832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.5013525-CDS-S-ischiensis_contig9:2706667..27068031622817396.5013525-CDS-S-ischiensis_contig9:2706667..2706803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2706668..2706803 +
1695741083.0594833-CDS-S-ischiensis_contig9:2706667..27068031695741083.0594833-CDS-S-ischiensis_contig9:2706667..2706803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2706668..2706803 +
1622817396.5121706-CDS-S-ischiensis_contig9:2707593..27077721622817396.5121706-CDS-S-ischiensis_contig9:2707593..2707772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2707594..2707772 +
1695741083.0703678-CDS-S-ischiensis_contig9:2707593..27077721695741083.0703678-CDS-S-ischiensis_contig9:2707593..2707772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2707594..2707772 +
1622817396.5246181-CDS-S-ischiensis_contig9:2708021..27081321622817396.5246181-CDS-S-ischiensis_contig9:2708021..2708132Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2708022..2708132 +
1695741083.0807605-CDS-S-ischiensis_contig9:2708021..27081321695741083.0807605-CDS-S-ischiensis_contig9:2708021..2708132Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2708022..2708132 +
1622817396.539025-CDS-S-ischiensis_contig9:2709334..27095651622817396.539025-CDS-S-ischiensis_contig9:2709334..2709565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2709335..2709565 +
1695741083.0982258-CDS-S-ischiensis_contig9:2709334..27095651695741083.0982258-CDS-S-ischiensis_contig9:2709334..2709565Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2709335..2709565 +
1622817396.5499084-CDS-S-ischiensis_contig9:2710310..27103791622817396.5499084-CDS-S-ischiensis_contig9:2710310..2710379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710311..2710379 +
1695741083.11007-CDS-S-ischiensis_contig9:2710310..27103791695741083.11007-CDS-S-ischiensis_contig9:2710310..2710379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710311..2710379 +
1622817396.5624402-CDS-S-ischiensis_contig9:2710760..27108321622817396.5624402-CDS-S-ischiensis_contig9:2710760..2710832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710761..2710832 +
1695741083.1232798-CDS-S-ischiensis_contig9:2710760..27108321695741083.1232798-CDS-S-ischiensis_contig9:2710760..2710832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710761..2710832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20700.1

>prot_S-ischiensis_contig9.20700.1 ID=prot_S-ischiensis_contig9.20700.1|Name=mRNA_S-ischiensis_contig9.20700.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=266bp
NDEGRGAEGLPHPPVRALLGGALVESLGRVDKRPGFHDRDYVYPVGFSAI
RLMMQASDSRARRVRFSILERRGRPAFRAALLCPTNDAGEREGGSQMASA
GCGAEEFVLEEDTQEAAWWGMCEHLGIAEEGDQPEKKVLTKGSVHGTESG
DSGMFFSTRLHEVVEGLPGTEGCAEYQFLGERAGENTRRERQIRNKDGKF
DLEALKTRLEKSYWRSRPDEVKQQEREQMKVNRKRKQPGAGADDGASSSR
PSRRRTERAARQRRDT
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mRNA from alignment at S-ischiensis_contig9:2706668..2710834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20700.1 ID=mRNA_S-ischiensis_contig9.20700.1|Name=mRNA_S-ischiensis_contig9.20700.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4167bp|location=Sequence derived from alignment at S-ischiensis_contig9:2706668..2710834+ (Schizocladia ischiensis KU_0333)
AACGACGAGGGGCGGGGGGCCGAGGGGCTGCCCCACCCTCCGGTGCGGGC
GCTGCTGGGGGGCGCGCTGGTGGAGTCACTGGGCAGGGTTGACAAAAGGC
CGGGGTTCCACGACCGGGACTACGTGTACCCCGTCGGTGAGCTGTTCCTC
TGCTTGTGTGTGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGA
TCACGCGCCTCGGTGGAGATGGGGCAGGATATGGCTCTAAACTTCCAAGC
ATGGTTCGCAACACGGATTGAGAAAGCACGAGGTAAGAAAATAGCGGCTC
CGGTGCACAGGCAGGTGAGAAAGAATCCGGACTTGGAGGATCTCCGGCCG
GCCGGCAGACATACAGCCATGTTTGTCTTTTCTTGGCACGAGCCAACCCG
GACGCGAACCGGGGACCTTCTGTGTATACTTACTACTTCCGGATTTTTAT
TCTTCTAAGTAGTACTCGTACTCGTACGTATACTTGGATGTATTATATAA
TATCGCGAGTGTGTGACTGCCCGGCTGTTGTTATTTTCGTATTCGCGCCC
GGGCCGCAAGTGGTGGCAGCATATGCGCACTGTACTCCAAGGCAACCACG
TACGACAACAGTACTCGTACAGTACTTGCAGAGGTACTGCGAGTTATGTG
GAATTATGTAAACGATCGTTTGCCTGCCTGCTGGGGCGCGGCACACGACC
CCCCCTCCGGCTGGCTTGGGAGTGCCCTGCCTGTACTGGGCAAGATGCAA
AGCCTGTCTGCCTCTTCTTCCCTCCCTCTTCCTCTCTCTCCATCTCTTGA
TCTCTCGGCCTCGCCCGCGCACACACACATGCACGCACACACACACACAC
ACACACACACACACACACACACACAGACGCACACCGCTTCCCCGCTCGAC
CGCCCGCCCGCCCCCCCGTCGCCCAGGCTTCTCTGCCATCCGGCTCATGA
TGCAGGCCTCGGACAGCCGGGCACGCCGCGTGCGCTTCAGTATCCTGGAG
AGGAGGGGCCGCCCAGCTTTCCGGGCCGCGCTGCTCTGCCCCACCAACGA
CGCCGGGGAGCGGGAGGGGGGCTCCCAGATGGCCAGTGCGGGCTGCGGGG
CGGAGGTTAGGAACGAGCTGTGATATGATGTGATGCGATGTTATACGTGT
ATATGTGACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACC
ACGTGAGTACATAGATGCTCCGAATATATATATATATGTGTGTGTGTGTA
CTCGTGATTCAGTTGTAACATGCCGTGCTCGAAATGAGTTTGTTTCGTTT
TTGGTTAACGGTGCTGCCTTCTGCCCGCCGATGTGCTCGTGCACGCCTCC
ACAGGAATTTGTCCTGGAGGAGGACACGCAGGAGGCGGCCTGGTGGGGCA
TGTGCGAGCATCTGGGCATCGCCGAGGAGGGCGACCAGCCGGAGAAGAAA
GTGCTCACCAAAGGAGTGAGTAGCAGCAGTAGGGGTAGAAAGGAGTATCG
CTAGTATGAGTAGTACTGTATTAATGGTAGTGGTCGTGGTAGTAGTAGTG
CGAGTAGTACAGTAGTACGAAGTGGTACTGGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTTGTAGTCGTCGTCGTAGTAGTACGAGTAGTAGTATTGACAT
GAACAATGCAGGGCGAGGTTTCGTAGTTGTAGTAGTAGTAGCAGTAGGTA
CTTGAAGTAGTACTAGTAGTAGTTTGTGAGTACACACAGTAGTGGTAGTA
GTAGTAGCAGTAGTAGTACTTGTAGTAGTTGGGACGCGAGAGTCCATGAC
TAAATAGCTACTCCTGCCGGAGGGCAGACCCCAAGTTTCGCCTTAGGGGT
GTCGGCATTGCACGCAAGGTTATGTCGCAAGACAAACCAATCAGTACATA
GTAGGAGCAAAGACGAGGATCGTTCGGGTCCAGGGCATGCACATAGACGA
GAAACCTCGTCCGGACGTGAATACACACACAGTAGGTAGTAGTGGTAGTT
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAGTGGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAGGGTATATATAC
ATATGCACTCACGCTGTGCTTGCCGTAGTCCCGAGACAATTGACCACACG
CCTCGGTCGAGACGGAGCAGTAGTAGTAGTATGAATAGTAGTATTCATGG
CTAAACAGCTACTCCTGCCGGAGGGCAAACCCGAAGTTTTCGACTTAGGG
CTGTCGGCATTGCACGCAAGGTTATGTCACAAGACAAACCAATGAGTACG
TAGTATTGGTAGTGGTACTCGTAGCAGTAGTGGTACTCACCCCTCACACC
TCGTCCCCCGCTTCCTACCTCCTCCCCGTCTTCCGCCCCGTCCTCCTGCC
CCTACCTGCCCCTCCCCCCACTCCCACTCCTTTTTCTCCTCCTTCTCCTT
CTCCTTCTCCCCCTCCCCCTCCTCCCCGCCCCATTCCCTCCATCCCCCTC
CACCCCCCCTGGACTCCCGAGAACACTCAATTCTTGCATGGGACAACTAC
TGTACTAATTCGAAAACGTTCAATCTCACACACGTGCGATTGTACCTCGT
TGCTATTTATATGGATCACCCCCGTGGACTCCCCCCGTTCTCCTCCACCT
CCGCCTCCCCCGGCCAGTCGGTGCACGGCACCGAGAGCGGAGATTCCGGA
ATGTTCTTCAGCACGCGCTTGCACGAGGTGGTGGAAGGGCTGCCGGGGAC
GGAGGGCTGCGCCGAGTACCAGTTCCTGGGCGAGCGGGCGGGCGAGAACA
CCCGGCGGGAGAGGCAGATTCGGAACAAGGACGGCAAGTTCGACCTGGAG
GCGCTGAAGACGCGCCTGGAGAAGAGCTACTGGAGGTCGAGGCCTGATGT
GAGTGTGTGCGTGCGTGCGTGCTCGCGTGCCTCTGTGCGTGTGTCTGTGT
GTGTGTGGCTCAATGCTCCGTCTCGGTCGAGGCGCGAGATCAATGGCCTC
GGAACCGCGGCAAGGACCGCGCGAGTACATGTACTCTCCTGTACTCCCGC
AGCTCAGGTGCCGCAGCACTTCATGAATTCGAGACTCACTCGGCTTGGGT
CTCGATCGAGGCGCGTGGTCAGTGGTCGCGTGGTCAATGGTCTCGGGACT
ACGGCAAGCACACAGTGAGTACGAGTACATATATATATATATATATACTC
GGCTTGGGCGGTACCCGCCGACTCCGCCGACACGTATGCATTGCAGGTAG
CCGTACAGTCCTAGCCACCAGGGTTGGCACTTAGAGGTTAACTGCGGCCT
AGTTAGCCTTCATTTTAGGTCTACAGTACTCCCCTATTGACGGGCCTAAA
AGGGCACCACTTAGGGGTTAAGTGCCAGCCCTGGTAGCAACAGTCTGGAA
GCGCTTGCTGCGCTCGTCACGGCGAGGTGGTTCTCAGGAAGCACGCCGTC
CCGTCCCCGCCTCCTGTGAGACGACCGCTTTTGCGTTAACACTTTTTACC
CCTGCTGAATTGGACTTGCACACCAAAACCCTGTATTTATACGGACCCCA
CGGTTGAAATGGTTAACCCCCAATGCCTCGCTACCCCGTGCCTCTGGGGG
CGGGCACCACGCGCGTGCGTATACCCGTGGCTTTGCATTGCAGGAGGTGA
AGCAGCAGGAACGCGAGCAGATGAAGGTGAACAGGAAGCGGAAACAGCCG
GGGGCTGGGGCGGTGAGTGTGTGTTTGTGTGTGCGCGCGTGTGTGTGTCC
GCGCGTGCGCGTGTGCGCACGTGCTCCTTTGTGTGCATGTTGGTGCAAAA
ACGCGCAACAACCCCCACGACGCCCACCGACTCAACCACCCCTCTTCCTC
CCCCGTCCCCAGCCACCGCCATGCTAAAGCCTCGCCCCCCCCCCCTGCCC
CCCCCCGCGCCAGGACGTACAGGAACGCCAGGACGTACCTAGTTATCGAC
AGTACTGATATATGTATATAGTCGATGTTTGATAGTTTGACCCGCACAAA
ATCCAAGTACTTCGAAGTAGTTAGTAGCGCCACCCACATTATCAGTCGAG
CCCGATGCTTAACCATCTACTGATCGATGCTCCATCACCGCAGGACGATG
GGGCAAGCAGCAGCAGGCCCTCCCGAAGGCGGACCGAGCGAGCGGCCAGG
CAGAGGCGAGACACGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2706668..2710834+

>mRNA_S-ischiensis_contig9.20700.1 ID=mRNA_S-ischiensis_contig9.20700.1|Name=mRNA_S-ischiensis_contig9.20700.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1596bp|location=Sequence derived from alignment at S-ischiensis_contig9:2706668..2710834+ (Schizocladia ischiensis KU_0333)
AACGACGAGGGGCGGGGGGCCGAGGGGCTGCCCCACCCTCCGGTGCGGGC
GCTGCTGGGGGGCGCGCTGGTGGAGTCACTGGGCAGGGTTGACAAAAGGC
CGGGGTTCCACGACCGGGACTACGTGTACCCCGTCGAACGACGAGGGGCG
GGGGGCCGAGGGGCTGCCCCACCCTCCGGTGCGGGCGCTGCTGGGGGGCG
CGCTGGTGGAGTCACTGGGCAGGGTTGACAAAAGGCCGGGGTTCCACGAC
CGGGACTACGTGTACCCCGTCGGCTTCTCTGCCATCCGGCTCATGATGCA
GGCCTCGGACAGCCGGGCACGCCGCGTGCGCTTCAGTATCCTGGAGAGGA
GGGGCCGCCCAGCTTTCCGGGCCGCGCTGCTCTGCCCCACCAACGACGCC
GGGGAGCGGGAGGGGGGCTCCCAGATGGCCAGTGCGGGCTGCGGGGCGGA
GGCTTCTCTGCCATCCGGCTCATGATGCAGGCCTCGGACAGCCGGGCACG
CCGCGTGCGCTTCAGTATCCTGGAGAGGAGGGGCCGCCCAGCTTTCCGGG
CCGCGCTGCTCTGCCCCACCAACGACGCCGGGGAGCGGGAGGGGGGCTCC
CAGATGGCCAGTGCGGGCTGCGGGGCGGAGGAATTTGTCCTGGAGGAGGA
CACGCAGGAGGCGGCCTGGTGGGGCATGTGCGAGCATCTGGGCATCGCCG
AGGAGGGCGACCAGCCGGAGAAGAAAGTGCTCACCAAAGGAGAATTTGTC
CTGGAGGAGGACACGCAGGAGGCGGCCTGGTGGGGCATGTGCGAGCATCT
GGGCATCGCCGAGGAGGGCGACCAGCCGGAGAAGAAAGTGCTCACCAAAG
GATCGGTGCACGGCACCGAGAGCGGAGATTCCGGAATGTTCTTCAGCACG
CGCTTGCACGAGGTGGTGGAAGGGCTGCCGGGGACGGAGGGCTGCGCCGA
GTACCAGTTCCTGGGCGAGCGGGCGGGCGAGAACACCCGGCGGGAGAGGC
AGATTCGGAACAAGGACGGCAAGTTCGACCTGGAGGCGCTGAAGACGCGC
CTGGAGAAGAGCTACTGGAGGTCGAGGCCTGATTCGGTGCACGGCACCGA
GAGCGGAGATTCCGGAATGTTCTTCAGCACGCGCTTGCACGAGGTGGTGG
AAGGGCTGCCGGGGACGGAGGGCTGCGCCGAGTACCAGTTCCTGGGCGAG
CGGGCGGGCGAGAACACCCGGCGGGAGAGGCAGATTCGGAACAAGGACGG
CAAGTTCGACCTGGAGGCGCTGAAGACGCGCCTGGAGAAGAGCTACTGGA
GGTCGAGGCCTGATGAGGTGAAGCAGCAGGAACGCGAGCAGATGAAGGTG
AACAGGAAGCGGAAACAGCCGGGGGCTGGGGCGGAGGTGAAGCAGCAGGA
ACGCGAGCAGATGAAGGTGAACAGGAAGCGGAAACAGCCGGGGGCTGGGG
CGGACGATGGGGCAAGCAGCAGCAGGCCCTCCCGAAGGCGGACCGAGCGA
GCGGCCAGGCAGAGGCGAGACACGGACGATGGGGCAAGCAGCAGCAGGCC
CTCCCGAAGGCGGACCGAGCGAGCGGCCAGGCAGAGGCGAGACACG
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