prot_S-ischiensis_contig9.20700.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20700.1
Unique Nameprot_S-ischiensis_contig9.20700.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length266
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20700.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.870e-7
Identity = 63/226 (27.88%), Postives = 98/226 (43.36%), Query Frame = 0 
Query:    3 EGRGAE--GLPHPPVRAL-LGGALVESLGRVDKRPGFHDRDYVYPVGFSAIRLMMQASDSRARRVRFSILERRGRPAFRAALLCPTNDAGEREGGSQMASAGCGAEEFVLEEDTQEAAWWGMCEHLGIAEEGDQPEKKVLTKGSVHGTESGDSGMFFSTRLHEVVEGLPGTEGCAEYQFLGERAGENTRRERQIR---NKDGKFDLEALKTRLEKSYWRSRPDEVK 222
            EG+G +  G   P    L +   L+E+LGRVD R GFH    ++P G+ AIR++M     RA R R SI      PAFR  L   +   G+                   E  TQ+  +  + + L  A  G++       K SV+G        FF++ +  ++EG+P +E C +Y F   R        +++        +   E ++  LEKS+W   P+  K
Sbjct:  536 EGKGTKLLGKREPGAAPLPVADILIENLGRVDTRFGFHSSKTIFPPGYRAIRMVMDGRTLRAIRARCSIYVENDAPAFRIELDESSIPPGKAT---------------TFEATTQKECFNQVFKALDTA--GNR------AKESVYG-----GPQFFNSAVKALIEGMPRSEECDKYVFAAMRGRGTAPMFKKVAVDWQAAAERAEEKMRHELEKSWWTGMPEAEK 733
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE4.870e-727.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.360coord: 14..174
e-value: 4.8E-9
score: 38.1
IPR003888FY-rich, N-terminalPFAMPF05964FYRNcoord: 22..66
e-value: 2.6E-8
score: 33.6
IPR003888FY-rich, N-terminalPROSITEPS51542FYRNcoord: 14..71
score: 15.536

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2706668..2710832 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20700.1mRNA_S-ischiensis_contig9.20700.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2706668..2710834 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20700.1 ID=prot_S-ischiensis_contig9.20700.1|Name=mRNA_S-ischiensis_contig9.20700.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=266bp
NDEGRGAEGLPHPPVRALLGGALVESLGRVDKRPGFHDRDYVYPVGFSAI
RLMMQASDSRARRVRFSILERRGRPAFRAALLCPTNDAGEREGGSQMASA
GCGAEEFVLEEDTQEAAWWGMCEHLGIAEEGDQPEKKVLTKGSVHGTESG
DSGMFFSTRLHEVVEGLPGTEGCAEYQFLGERAGENTRRERQIRNKDGKF
DLEALKTRLEKSYWRSRPDEVKQQEREQMKVNRKRKQPGAGADDGASSSR
PSRRRTERAARQRRDT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003888FYrich_N