mRNA_S-ischiensis_contig9.20686.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20686.1
Unique NamemRNA_S-ischiensis_contig9.20686.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20686.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.010e-31
Identity = 61/111 (54.95%), Postives = 85/111 (76.58%), Query Frame = 3 
Query:   12 REVEMLVTEHFLYLVSNVVSRRWTARPTEDKIRAVRVLGRLAGMLMPEEAGSFWPKVLATLNSALEDPQATPHLRCEAYAVMCGFISTLGDAALADHLGTVAVSLIALLED 344
            R+VE +VT+ FL+L+SNVVS+RW++R + DKIRA++VLGRL G L  +EAG  +PKV+ATL SAL DP  T   R  AY VM G+I  L DA+LA++L T+ V+++AL+E+
Sbjct:   73 RKVESMVTQQFLFLMSNVVSKRWSSRTSRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEE 183
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI3.010e-3154.95Similar to ataxia telangiectasia and Rad3 related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2651614..2653508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.5e-25
Seed eggNOG ortholog2880.D7FT24
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size411
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20686.1prot_S-ischiensis_contig9.20686.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2651637..2653508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.933458-UTR-S-ischiensis_contig9:2651613..26516361622817395.933458-UTR-S-ischiensis_contig9:2651613..2651636Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2651614..2651636 +
1695741082.6754675-UTR-S-ischiensis_contig9:2651613..26516361695741082.6754675-UTR-S-ischiensis_contig9:2651613..2651636Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2651614..2651636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.9445791-CDS-S-ischiensis_contig9:2651636..26516861622817395.9445791-CDS-S-ischiensis_contig9:2651636..2651686Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2651637..2651686 +
1695741082.6889-CDS-S-ischiensis_contig9:2651636..26516861695741082.6889-CDS-S-ischiensis_contig9:2651636..2651686Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2651637..2651686 +
1622817395.9553103-CDS-S-ischiensis_contig9:2651944..26520501622817395.9553103-CDS-S-ischiensis_contig9:2651944..2652050Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2651945..2652050 +
1695741082.6981232-CDS-S-ischiensis_contig9:2651944..26520501695741082.6981232-CDS-S-ischiensis_contig9:2651944..2652050Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2651945..2652050 +
1622817395.9676666-CDS-S-ischiensis_contig9:2653277..26535081622817395.9676666-CDS-S-ischiensis_contig9:2653277..2653508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2653278..2653508 +
1695741082.7089424-CDS-S-ischiensis_contig9:2653277..26535081695741082.7089424-CDS-S-ischiensis_contig9:2653277..2653508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2653278..2653508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20686.1

>prot_S-ischiensis_contig9.20686.1 ID=prot_S-ischiensis_contig9.20686.1|Name=mRNA_S-ischiensis_contig9.20686.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MLVTEHFLYLVSNVVSRRWTARPTEDKIRAVRVLGRLAGMLMPEEAGSFW
PKVLATLNSALEDPQATPHLRCEAYAVMCGFISTLGDAALADHLGTVAVS
LIALLEDEDTALPPPSNPEEAPGPTPPWA
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mRNA from alignment at S-ischiensis_contig9:2651614..2653508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20686.1 ID=mRNA_S-ischiensis_contig9.20686.1|Name=mRNA_S-ischiensis_contig9.20686.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1895bp|location=Sequence derived from alignment at S-ischiensis_contig9:2651614..2653508+ (Schizocladia ischiensis KU_0333)
GGCAGATCCGTCGGGAGGTTGAAATGCTGGTGACGGAGCACTTTCTGTAC
CTGGTGTCCAACGTGGTTTCCAGGTAACCATGGTACAACAGTGCCATCGC
TACTATTTTTGGTGCCCGGGCCGCCGCCCTATGAAGGACGCATCGGATCG
CATGACCGTGAAATTCTTGACGCATGCAAGAGCTCGATGAGTGCTTCCTT
TCATTTGCGCTACAGCTTTCAGAAGTATCACGACATCACATGGAGCGAGC
GACAGGTCAATCGATATCCGATAAGACTATTTGGCAAAAGAAATCGCACT
TTCTGTACCTGGTGTCCAACGTGGTGTCCAGGAGGTGGACGGCCCGGCCG
ACGGAGGACAAGATCCGCGCGGTGCGGGTGCTGGGGCGGCTCGCGGGCAT
GCTCATGCCGGAGGAGGCAGGGTCCTTCTGGCCGAAGGTGGGGGCAGGAG
CGAGCTTTTGTGTGTGTGTGTGATTCATATATATGGTAACGAGGTACAAT
CGCACGTGTGTGAGACTGAGTGTTTTTGTATTAGTGGTTGTCCTATTTAA
GGGCTGAGTGTTCTCATACTAGTGACTATCACATAAAAGAATAAAAAACA
AAGAGGGGGGAACAAGAAAAAAGGGGGGGGGGGGGAGAGAAAAAGGAGAA
AGGGGGGGGCGGGAGCGGGCTTGTGTGTGTGTGTGATTCATATAAGTTGT
AACGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTTGTATCAGTGG
TTATCCCATTTAGGAATTGGGCGTTCTCGTATTAATGACTATCGCATCAA
AGTATGTGTCGCGTGATTGTGCCCAATGAGGCCGGGTTCTCCTGGCCAAA
GGCGCGGGGTTGGAACGGGCTTGTGTGTGTGTGTAGGTGGGTGGGTGGGT
ATGTTTGCGTGTATGTGTGAGAGAGGTGTGTGTGTGTGTGTGCGTGTGTA
CGAGTGTACTTTGAAGTATATGCTCATGTGCATGTTTCTGTGTGTGTGTG
AGTGCGCATGCGAGTGTGTATGGATGCTTGTGGGTACATGTGCCCAACAG
TTACATAAAACACACACGCACGCCCGCACACACAGACACACACACTCTCT
CTCACACACACACACGTACACCCACGCTTGCATGCAGACATGCACACACT
CACACGCACACACACACCACATCTATCTCACACACACGCTTACAGACAAA
CATACCCACACTCTCTCTCACACACACACACACACGCACGCACGCAAGCA
CACAACCACACACACACGCACACCCTCACACGTGCACAAACGTGCTTACA
GACACATGCACACACACACACACACACACACGCTCTCTCTCTCCCTCCCT
CCTCTCTCCCCTAGCTCACACTCACACACGCTTGCAGACACACACATACA
CTCTCTCTCTCTCTCGCGCGCGCGCGCGCACACACACACACACACACAAA
TGTGCCTCAGACACACACACACACCTCTCTCCTCCCTCCCTCCCTCCCCC
TCTCTCACTTACAGACACACGCATACTCTTTTTCTCTCTCTCTCACACAC
AAAAATATGCCTACACACACACACACACACGTCTCCCTCCCTCCCTCCCT
CCCCCCCTCTCTCTCTCTCACACACACACGTACACACGCACACACACGGC
GATGACCACGGCAGGTGCTAGCCACCCTCAACTCCGCCCTAGAGGACCCA
CAAGCCACGCCCCACCTCCGATGCGAGGCCTACGCGGTAATGTGCGGGTT
CATCAGCACCCTGGGCGACGCCGCCCTCGCTGACCACCTCGGCACCGTCG
CCGTCAGCCTCATCGCCCTGCTCGAGGACGAAGACACCGCCCTCCCGCCC
CCGTCAAACCCCGAGGAGGCCCCCGGACCCACCCCCCCTTGGGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2651614..2653508+

>mRNA_S-ischiensis_contig9.20686.1 ID=mRNA_S-ischiensis_contig9.20686.1|Name=mRNA_S-ischiensis_contig9.20686.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig9:2651614..2653508+ (Schizocladia ischiensis KU_0333)
ATGCTGGTGACGGAGCACTTTCTGTACCTGGTGTCCAACGTGGTTTCCAG
ATGCTGGTGACGGAGCACTTTCTGTACCTGGTGTCCAACGTGGTTTCCAG
GAGGTGGACGGCCCGGCCGACGGAGGACAAGATCCGCGCGGTGCGGGTGC
TGGGGCGGCTCGCGGGCATGCTCATGCCGGAGGAGGCAGGGTCCTTCTGG
CCGAAGGAGGTGGACGGCCCGGCCGACGGAGGACAAGATCCGCGCGGTGC
GGGTGCTGGGGCGGCTCGCGGGCATGCTCATGCCGGAGGAGGCAGGGTCC
TTCTGGCCGAAGGTGCTAGCCACCCTCAACTCCGCCCTAGAGGACCCACA
AGCCACGCCCCACCTCCGATGCGAGGCCTACGCGGTAATGTGCGGGTTCA
TCAGCACCCTGGGCGACGCCGCCCTCGCTGACCACCTCGGCACCGTCGCC
GTCAGCCTCATCGCCCTGCTCGAGGACGAAGACACCGCCCTCCCGCCCCC
GTCAAACCCCGAGGAGGCCCCCGGACCCACCCCCCCTTGGGCAGTGCTAG
CCACCCTCAACTCCGCCCTAGAGGACCCACAAGCCACGCCCCACCTCCGA
TGCGAGGCCTACGCGGTAATGTGCGGGTTCATCAGCACCCTGGGCGACGC
CGCCCTCGCTGACCACCTCGGCACCGTCGCCGTCAGCCTCATCGCCCTGC
TCGAGGACGAAGACACCGCCCTCCCGCCCCCGTCAAACCCCGAGGAGGCC
CCCGGACCCACCCCCCCTTGGGCA
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