prot_S-ischiensis_contig9.20686.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20686.1
Unique Nameprot_S-ischiensis_contig9.20686.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length129
Homology
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BLAST of mRNA_S-ischiensis_contig9.20686.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.770e-29
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 0 
Query:    2 LVTEHFLYLVSNVVSRRWTARPTEDKIRAVRVLGRLAGMLMPEEAGSFWPKVLATLNSALEDPQATPHLRCEAYAVMCGFISTLGDAALADHLGTVAVSLIALLED 107
            +VT+ FL+L+SNVVS+RW++R + DKIRA++VLGRL G L  +EAG  +PKV+ATL SAL DP  T   R  AY VM G+I  L DA+LA++L T+ V+++AL+E+
Sbjct:   78 MVTQQFLFLMSNVVSKRWSSRTSRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEE 183
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20686.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI1.770e-2954.72Similar to ataxia telangiectasia and Rad3 related ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012993UME domainPFAMPF08064UMEcoord: 10..104
e-value: 1.7E-8
score: 34.3
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 26..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2651637..2653508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20686.1mRNA_S-ischiensis_contig9.20686.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2651614..2653508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20686.1 ID=prot_S-ischiensis_contig9.20686.1|Name=mRNA_S-ischiensis_contig9.20686.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MLVTEHFLYLVSNVVSRRWTARPTEDKIRAVRVLGRLAGMLMPEEAGSFW
PKVLATLNSALEDPQATPHLRCEAYAVMCGFISTLGDAALADHLGTVAVS
LIALLEDEDTALPPPSNPEEAPGPTPPWA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012993UME
IPR016024ARM-type_fold