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Homology
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE) HSP 1 Score: 152 bits (384), Expect = 1.030e-38 Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 2
Query: 32 KRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVS-GGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
KR DLP AS GR+P R+L P + + S+ W LC L+ G HC SE RL C D C F R + F R+ LVKAE + G++ G++ +RR+++ M Q+Y+VTW+ AET ET T +++ GLGRK PR +V IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct: 3 KRGVDLPMASGGRSPTPPRRQLNMPDATPANVFSFTWVLCGFALICIGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 201
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.810e-33 Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 2
Query: 86 LRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDAC--TFLRKVSGVEEFRHAFPRDHLVKAETVRVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
+REL P ++ L+SW WTL L +FG CR++SE R+ CD C T +R + +EE AFPR +L+ AE VR+ G++ +R+K++T SY++ W + R+T H+ +S+RGLGR+ PR+RV EIM YI R+ E+DV + ++TSG+G++C IFG LLL+MR AVG+L
Sbjct: 1 MREL--PKVTPLKLLSWCWTLFGLFLSVFGFLKCRSNSESSRIACDSTDCVVTMVRGGAVIEET--AFPRVNLMSAELVRLYQGEIVDPTSLSRQKRRTTASSYAIKW---LDAQRQT-HM-RPMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI) HSP 1 Score: 118 bits (295), Expect = 4.290e-27 Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 2
Query: 173 GVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVSG-GKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
G HC SE RL C D C F R F R+ LVKAE + G++ G++ +RR+++ M Q+Y+VTW+ AET ET T +++ GLGRK PR +V IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct: 2 GYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 153
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_002430.1 |
| Exons | 3 |
| Model size | 2023 |
| Cds size | 699 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817395.599363-UTR-S-ischiensis_contig9:2604581..2605889 | 1622817395.599363-UTR-S-ischiensis_contig9:2604581..2605889 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2604582..2605889 - |
| 1695741082.3834543-UTR-S-ischiensis_contig9:2604581..2605889 | 1695741082.3834543-UTR-S-ischiensis_contig9:2604581..2605889 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2604582..2605889 - |
| 1622817395.6438718-UTR-S-ischiensis_contig9:2609091..2609107 | 1622817395.6438718-UTR-S-ischiensis_contig9:2609091..2609107 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2609092..2609107 - |
| 1695741082.4287746-UTR-S-ischiensis_contig9:2609091..2609107 | 1695741082.4287746-UTR-S-ischiensis_contig9:2609091..2609107 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2609092..2609107 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817395.611068-CDS-S-ischiensis_contig9:2605889..2606126 | 1622817395.611068-CDS-S-ischiensis_contig9:2605889..2606126 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2605890..2606126 - |
| 1695741082.3957057-CDS-S-ischiensis_contig9:2605889..2606126 | 1695741082.3957057-CDS-S-ischiensis_contig9:2605889..2606126 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2605890..2606126 - |
| 1622817395.6220846-CDS-S-ischiensis_contig9:2608503..2608714 | 1622817395.6220846-CDS-S-ischiensis_contig9:2608503..2608714 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2608504..2608714 - |
| 1695741082.4084268-CDS-S-ischiensis_contig9:2608503..2608714 | 1695741082.4084268-CDS-S-ischiensis_contig9:2608503..2608714 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2608504..2608714 - |
| 1622817395.6331165-CDS-S-ischiensis_contig9:2608840..2609091 | 1622817395.6331165-CDS-S-ischiensis_contig9:2608840..2609091 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2608841..2609091 - |
| 1695741082.4187546-CDS-S-ischiensis_contig9:2608840..2609091 | 1695741082.4187546-CDS-S-ischiensis_contig9:2608840..2609091 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2608841..2609091 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20678.1 >prot_S-ischiensis_contig9.20678.1 ID=prot_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=233bp
MIWRGKRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLV LFGVRHCRNSSEMCRLQCDPDACTFLRKVSGVEEFRHAFPRDHLVKAETV RVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRG LGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMR LAVGDLRGVSPEPRRPAPEQRRRSRTARKPRH* back to topmRNA from alignment at S-ischiensis_contig9:2604582..2609107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20678.1 ID=mRNA_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4526bp|location=Sequence derived from alignment at S-ischiensis_contig9:2604582..2609107- (Schizocladia ischiensis KU_0333) GGCCAAATACCTGGGAATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTC
CCTTCGCGAGTGCAGGACGAACGCCACCTCGGCACCTGCGAGAACTGAAG
ACCCCTAGTATTAGCTCCCCCACATTAATATCATGGGCGTGGACGTTGTG
CGCGGCAATGCTTGTGCTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCG
AGATGTGCAGGCTGCAGTGCGATCCCGACGCATGCACGTTCCTGCGCAAG
GTCTCCGGCGTGGAAGAGTGAGACGCGTGCCCGTGTGGCGTATTTCTAGC
GCGCTTTTCCTGGCGGGGCGTGTCCTCTTGCGTGAAGTTTAGATTGCCTG
ATGTGGTGTGCCCCCCACCGCGTGTCGCTTCCCTGCGCCACAGGTTTCGC
CATGCCTTCCCTCGGGATCACTTAGTAAAGGCGGAGACCGTGCGGGTGAG
CGGCGGGAAGGTAGCAACGGGCAGAAAGCCAAACCGGCGCAAGCAGAAGA
CGATGGGCCAAAGCTATTCTGTCACCTGGCGAACGTACGCCGAGACTGGG
CGGGAAACGGGCCACGTAACTGAGACTCTCAGCAATCGGGGGCTTGGGCG
CAAGGTGTGTCCCCACCTAGGAATGAATTCATGCTCGGTACACTGTGAGG
ACGGTCTGGTAGCATACTCTTGGTGTGTGTGGTGTGTGCGCCAGTGTTGA
GTATCGGCGCGGTTTGATTTCTTTCTCAAATATATGCATCGATATGCTGT
TTGCAATCTATTTATCGGTATGTCAACATGGGTATTTGACGTCCAATCCT
AAACCCCCACTTGAGTAGGTAGCTAAGTTTTTTCGCGTCGAAGGCGTCTG
CCCACTTCATGGGAACCACGGCCTGGTCACTACAATTCCTCTCCCTCCCT
TTCCTTCCCCCCCGCCTCCTCCTCCTCCCCATCCACCTCCCCCTTCCCCA
CACAACTTTCCCCTAGCGAGCTAAGGAAGGGCCATTGTTGAGGTCTCTAG
TGACGTGGCCCGCACCTCGCCCCGTGTTGTTTCTTATAGTACTAGCGAGT
GTAGGAAGTACTTTGTGTTCAGCATGGGCGGAGGGGGCAGGCCCGGGTTG
ATGAGTCAGCCGACACATCCGCCATCGATTTTTTTGTCGGTTCCAATTTA
CTTGATTGGCAGTCGTCTAGGGTATTTGACTATTCAGTATGGTCCCTGAT
ATTCACACCTATACTACGTAGTGGAACAATTTTCAATTTTGGTGCAACTA
CAAACGGCTCCATACTAAACGCGAGTAGTTTTATAAAAACGCCTCCTCGG
TAAAAACGCCTGGCTCGGTGATTTCTTTAACACGCGGTTTTCCGATTGCG
ACCGAGCGCGTGCGAACAAGCGATCGGCGCGGCCGAGCGACCCCACCAAC
CTCTTCTCCAAGTCAAAACACCGCTAGGGGCACCCTCTCTTGGCCGACGG
GCGGTTCTTAAAAAACAACAAAGCCAAACCCGAACTGTCACCACCCCCGA
AAAGGGGCACCTACGTAGGTATAAATATGGCGGTCGATTCGATATTGCAC
CGCTGCTGTGCGTGCACGTGCAGGTGCTTAAAGTGCCCTGCCCGCAAGCC
GACGGCCGTGTATCAATAACACAGCCGCAGACTAGCATGGGTGGTGCGTA
TTAGAAGGCCCGAATGAACTTGACCCGCAGGGTTGGGGCGATGCGGCTAT
GCAGACAATGCGAGGCAACATCCCCAACCGGTAGAGTTGTGAACTGGCAA
GGCCTACCAGTTTAACTGTTCACCGGTCCTGTGACCGGACGATTTTAACC
GGTTGCCGGCAATGGCTAGTGTTTTGCCAAAATCAACGAATAACGGTGAT
GTCACCCGCTCCGGCTACACGATTGGCCACCGGTCGGTATTTAAACCAGT
AAACTGGTACCGACCGGTAAAAACCGGCATTAGTTCACAACACTGCCAAC
CGGGGATCTTCCAGCAAGAACCTTCTCGAGGTCGGGCTTCGGGGCCAACC
CTGTGACTGCGGCGCCGAATGGGGGGGGATCATGTCCATCACTTTCATGC
GCCAATGAACCACGGTACTCTCTCCAAGCAAAGCGTACAGACAGTACAGT
ACAGTAGTGTATGAAGTAGTTGCATCGGTTGCTGCCATCAGTATTGTTCA
CTAGCCCCCCGGCAGACTGTGCCAAGCCATACAGCGAGAGACCTCAACAG
TGGCCCTTCCTAATTAAAGCAGTGGCTTGAACAGCATCAACGTAGACTAC
ACTTTTTTCCGGCAGGAGTTCAGGGCCCCGGTGGGGTGCCCGTGGGCCCA
GCCTGTGGCTTACAGTGCCACATGTGTCCACACGATGTGCATGCCGTAGG
TCGCATGGTTTTGCAAGCGGCTGCAGGCGCGATTGGATTGTCTTTTTCGT
ATCCAGCTACGCTCACGGAACGACCTTGTTGTTGCCGATATCTCGTGTTG
GTGGTTGGTCCGGTTTTCCTAGTATACCAGCAGCGCGTTTTCGGGCTATT
CCGATTGTCCTAGGTACCGCGAAGCGTTTCCGGTCTGTAGAAGTTGGGGT
CGATGTATTTGTCTCATCACGAGAGGCCACAATGTGCATAAACCAGATGA
TGTTTGGTTGTAGCCGGTGTCACAACCATCCAAGCGACTCATCGGCTACG
CCAGGCGGCGGCCCGTACCTCTAGCAGTAACTTACAAGTCTTCCAAGTAT
CACGAGGAACAAAGACAGGCAGGGGGGGGCGGAGTACTTCGGGCCAGCAC
TGCCCCCCCCCCCCTTGCACGGCTGCCCATCAACGGTGCCGCCCGGCCCC
GTTTTTGCCTCTCCCTCCTCCATCCCCGCCGTTGCCAGAAACCGTGGTAC
TCGCAAGCACTAATATAAGAACACTCAGCCCTCAAAGGGGACGACTACTG
TACTGATGCGCGAACAGTCAATCTCACACACGTGCGGTTGTACCTCGTTA
CTTTTTGCTTCGTATATTCAATCACCGCCAGAAACCGAGGACGCGGGTCG
GCGAGATCATGGCCTACATCCACAGGCAGAAGGACGAGCTTGACGTGGTG
GAGGAGAAGTGGACGAGCGGGCTGGGCATCGTCTGCACGATATTCGGGGC
ACTGCTGCTGGTGATGCGGCTGGCGGTGGGGGACCTCCGCGGGGTTTCCC
CCGAGCCCAGGAGGCCCGCACCGGAGCAGCGCCGAAGGAGCCGGACCGCA
AGAAAGCCCCGGCACTAGGTAGGGTATATATATATATATGTGTGTGTACT
CACGTGGTGCTTGCCGTAGTCCCGAGACCGTTGACCCCACGCCTCGTTCG
AGGCGGAGCAGAACAGTACGAAGTATTAGCAGGAACAACACAGAGGTGAG
GTGCGGGCCACGTCACTAGAGACCTCAGCAGTGGCCCTTCCTTATAGCTC
GCCAGCACTAGTAAGTACGGTAGAGCTACTTGCTGTACTGTACTCTAGAG
GGTTGGACCTGCGAGGAGACGACCACCCCTGGAGGCTTGCATTCCGACTC
GGAGTCCGTTGAGGCGTTCTGGGCCGGGGCGCCATGCCCTGCAGATTCTG
ATGCCGCAACCGCCGCGGGCATCCAGTGGCATGATGCTCACGGACTCTTT
CAGAGTTGGGCCCAGGCAATGCAGGCACGGCCTACGCTTCTTCTTCGACA
CGGTATCGGGCCGGGCCGGCTGGCTGTCTCTTGGGCTTGTATGAGCACTA
CCCGACACAGTGATCAGTGTGGCTTAGCTGAGCACATACCGTACAGATGT
AACTGTACTCGAGTAGGCATGAAACTGTCTTGGGTACCGCACGGACCTCC
GGGGCGCGGCGCCCCCGGGGGGCCTCCGAGGCTGAGGAGCCGGGAGCCTT
CAAGCTCCAGTGCACTAGAGATGCCGCCCGGCACGGAAAAGCCGCTTTGG
CTGGATTGGATCGTGCGTGGCTTGGCTCCTCCCTTCGGGGGAAACCTCTT
GCGCATCTGTAGACCTTTCAGAGTTGGCATGCCATGACAATCGTGTACTT
CAACAAGCCTACTTGTACTACAGTAGAGATCTACAGTAGTGTGCTTTTTT
TGCGGGTCTAGAGACCCCTGTCCCCCCCTGGCCGCGCGGTGCAGCCAGCG
TATTGGCCGTGCGCTGCGGTTTCAGCGCGTGGTAGAAAATACATTACATT
CAAAGTGTGGTGGCCGTGTCAAGTTTTTCAAGTTCTGGTGGCGGCCTGTT
TTCCGAGTCCGCCGTGCCTTTGGATCCGAGTCTGTCACGGCGTCGGCGTG
ACTCGGACCTGTAATATCACCTTTATAATTAGGAAAGTTTAAAAGCGGCG
CTGGCAGCAAAACAACATCAGATCTTCTGCCAGCCACTGAGGGGACCTCC
AGGGCATTGTTCGCGAACCGCTCTGGGTGGTGGCCCGGGAGCGCTTGTCA
GAGCGCTTCAGGGCAGGGTTGGCACTTGCACAGAGGCTACTGTAGTTAGG
GCCTAATTGGGCTTCATGATAGGTGTAAGTACCCCTAATTAAGTACATGT
ACTCGAGTAGTTACTGTAAGGGCCTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2604582..2609107- >mRNA_S-ischiensis_contig9.20678.1 ID=mRNA_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1398bp|location=Sequence derived from alignment at S-ischiensis_contig9:2604582..2609107- (Schizocladia ischiensis KU_0333) ATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTCCCTTCGCGAGTGCAGG ACGAACGCCACCTCGGCACCTGCGAGAACTGAAGACCCCTAGTATTAGCT CCCCCACATTAATATCATGGGCGTGGACGTTGTGCGCGGCAATGCTTGTG CTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCGAGATGTGCAGGCTGCA GTGCGATCCCGACGCATGCACGTTCCTGCGCAAGGTCTCCGGCGTGGAAG AATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTCCCTTCGCGAGTGCAG GACGAACGCCACCTCGGCACCTGCGAGAACTGAAGACCCCTAGTATTAGC TCCCCCACATTAATATCATGGGCGTGGACGTTGTGCGCGGCAATGCTTGT GCTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCGAGATGTGCAGGCTGC AGTGCGATCCCGACGCATGCACGTTCCTGCGCAAGGTCTCCGGCGTGGAA GAGTTTCGCCATGCCTTCCCTCGGGATCACTTAGTAAAGGCGGAGACCGT GCGGGTGAGCGGCGGGAAGGTAGCAACGGGCAGAAAGCCAAACCGGCGCA AGCAGAAGACGATGGGCCAAAGCTATTCTGTCACCTGGCGAACGTACGCC GAGACTGGGCGGGAAACGGGCCACGTAACTGAGACTCTCAGCAATCGGGG GCTTGGGCGCAAGGTTTCGCCATGCCTTCCCTCGGGATCACTTAGTAAAG GCGGAGACCGTGCGGGTGAGCGGCGGGAAGGTAGCAACGGGCAGAAAGCC AAACCGGCGCAAGCAGAAGACGATGGGCCAAAGCTATTCTGTCACCTGGC GAACGTACGCCGAGACTGGGCGGGAAACGGGCCACGTAACTGAGACTCTC AGCAATCGGGGGCTTGGGCGCAAGAAACCGAGGACGCGGGTCGGCGAGAT CATGGCCTACATCCACAGGCAGAAGGACGAGCTTGACGTGGTGGAGGAGA AGTGGACGAGCGGGCTGGGCATCGTCTGCACGATATTCGGGGCACTGCTG CTGGTGATGCGGCTGGCGGTGGGGGACCTCCGCGGGGTTTCCCCCGAGCC CAGGAGGCCCGCACCGGAGCAGCGCCGAAGGAGCCGGACCGCAAGAAAGC CCCGGCACTAGAAACCGAGGACGCGGGTCGGCGAGATCATGGCCTACATC CACAGGCAGAAGGACGAGCTTGACGTGGTGGAGGAGAAGTGGACGAGCGG GCTGGGCATCGTCTGCACGATATTCGGGGCACTGCTGCTGGTGATGCGGC TGGCGGTGGGGGACCTCCGCGGGGTTTCCCCCGAGCCCAGGAGGCCCGCA CCGGAGCAGCGCCGAAGGAGCCGGACCGCAAGAAAGCCCCGGCACTAG back to top
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