mRNA_S-ischiensis_contig9.20678.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20678.1
Unique NamemRNA_S-ischiensis_contig9.20678.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.030e-38
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 2
Query:   32 KRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVS-GGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
            KR  DLP AS GR+P    R+L  P  +   + S+ W LC   L+  G  HC   SE  RL C  D C F R  +         F R+ LVKAE   +   G++  G++ +RR+++ M Q+Y+VTW+  AET  ET   T  +++ GLGRK PR +V  IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct:    3 KRGVDLPMASGGRSPTPPRRQLNMPDATPANVFSFTWVLCGFALICIGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 201          
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.810e-33
Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 2
Query:   86 LRELKTPSISSPTLISWAWTLCAAMLVLFGVRHCRNSSEMCRLQCDPDAC--TFLRKVSGVEEFRHAFPRDHLVKAETVRVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
            +REL  P ++   L+SW WTL    L +FG   CR++SE  R+ CD   C  T +R  + +EE   AFPR +L+ AE VR+  G++      +R+K++T   SY++ W    +  R+T H+   +S+RGLGR+ PR+RV EIM YI R+  E+DV + ++TSG+G++C IFG LLL+MR AVG+L
Sbjct:    1 MREL--PKVTPLKLLSWCWTLFGLFLSVFGFLKCRSNSESSRIACDSTDCVVTMVRGGAVIEET--AFPRVNLMSAELVRLYQGEIVDPTSLSRQKRRTTASSYAIKW---LDAQRQT-HM-RPMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176          
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.290e-27
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  173 GVRHCRNSSEMCRLQCDPDACTFLR-KVSGVEEFRHAFPRDHLVKAETVRVSG-GKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRGLGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMRLAVGDL 634
            G  HC   SE  RL C  D C F R            F R+ LVKAE   +   G++  G++ +RR+++ M Q+Y+VTW+  AET  ET   T  +++ GLGRK PR +V  IM Y+ RQ D+LDV E +W +G+GIVC +FG +L+++R+ VG +
Sbjct:    2 GYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKD-AETQDET---TLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSI 153          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Y3_9PHAE1.030e-3840.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA1.810e-3343.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FT18_ECTSI4.290e-2741.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2604582..2609107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Exons3
Model size2023
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20678.1prot_S-ischiensis_contig9.20678.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2605890..2609091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.599363-UTR-S-ischiensis_contig9:2604581..26058891622817395.599363-UTR-S-ischiensis_contig9:2604581..2605889Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2604582..2605889 -
1695741082.3834543-UTR-S-ischiensis_contig9:2604581..26058891695741082.3834543-UTR-S-ischiensis_contig9:2604581..2605889Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2604582..2605889 -
1622817395.6438718-UTR-S-ischiensis_contig9:2609091..26091071622817395.6438718-UTR-S-ischiensis_contig9:2609091..2609107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2609092..2609107 -
1695741082.4287746-UTR-S-ischiensis_contig9:2609091..26091071695741082.4287746-UTR-S-ischiensis_contig9:2609091..2609107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2609092..2609107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.611068-CDS-S-ischiensis_contig9:2605889..26061261622817395.611068-CDS-S-ischiensis_contig9:2605889..2606126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2605890..2606126 -
1695741082.3957057-CDS-S-ischiensis_contig9:2605889..26061261695741082.3957057-CDS-S-ischiensis_contig9:2605889..2606126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2605890..2606126 -
1622817395.6220846-CDS-S-ischiensis_contig9:2608503..26087141622817395.6220846-CDS-S-ischiensis_contig9:2608503..2608714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2608504..2608714 -
1695741082.4084268-CDS-S-ischiensis_contig9:2608503..26087141695741082.4084268-CDS-S-ischiensis_contig9:2608503..2608714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2608504..2608714 -
1622817395.6331165-CDS-S-ischiensis_contig9:2608840..26090911622817395.6331165-CDS-S-ischiensis_contig9:2608840..2609091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2608841..2609091 -
1695741082.4187546-CDS-S-ischiensis_contig9:2608840..26090911695741082.4187546-CDS-S-ischiensis_contig9:2608840..2609091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2608841..2609091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20678.1

>prot_S-ischiensis_contig9.20678.1 ID=prot_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=233bp
MIWRGKRSEDLPFASAGRTPPRHLRELKTPSISSPTLISWAWTLCAAMLV
LFGVRHCRNSSEMCRLQCDPDACTFLRKVSGVEEFRHAFPRDHLVKAETV
RVSGGKVATGRKPNRRKQKTMGQSYSVTWRTYAETGRETGHVTETLSNRG
LGRKKPRTRVGEIMAYIHRQKDELDVVEEKWTSGLGIVCTIFGALLLVMR
LAVGDLRGVSPEPRRPAPEQRRRSRTARKPRH*
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mRNA from alignment at S-ischiensis_contig9:2604582..2609107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20678.1 ID=mRNA_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4526bp|location=Sequence derived from alignment at S-ischiensis_contig9:2604582..2609107- (Schizocladia ischiensis KU_0333)
GGCCAAATACCTGGGAATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTC CCTTCGCGAGTGCAGGACGAACGCCACCTCGGCACCTGCGAGAACTGAAG ACCCCTAGTATTAGCTCCCCCACATTAATATCATGGGCGTGGACGTTGTG CGCGGCAATGCTTGTGCTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCG AGATGTGCAGGCTGCAGTGCGATCCCGACGCATGCACGTTCCTGCGCAAG GTCTCCGGCGTGGAAGAGTGAGACGCGTGCCCGTGTGGCGTATTTCTAGC GCGCTTTTCCTGGCGGGGCGTGTCCTCTTGCGTGAAGTTTAGATTGCCTG ATGTGGTGTGCCCCCCACCGCGTGTCGCTTCCCTGCGCCACAGGTTTCGC CATGCCTTCCCTCGGGATCACTTAGTAAAGGCGGAGACCGTGCGGGTGAG CGGCGGGAAGGTAGCAACGGGCAGAAAGCCAAACCGGCGCAAGCAGAAGA CGATGGGCCAAAGCTATTCTGTCACCTGGCGAACGTACGCCGAGACTGGG CGGGAAACGGGCCACGTAACTGAGACTCTCAGCAATCGGGGGCTTGGGCG CAAGGTGTGTCCCCACCTAGGAATGAATTCATGCTCGGTACACTGTGAGG ACGGTCTGGTAGCATACTCTTGGTGTGTGTGGTGTGTGCGCCAGTGTTGA GTATCGGCGCGGTTTGATTTCTTTCTCAAATATATGCATCGATATGCTGT TTGCAATCTATTTATCGGTATGTCAACATGGGTATTTGACGTCCAATCCT AAACCCCCACTTGAGTAGGTAGCTAAGTTTTTTCGCGTCGAAGGCGTCTG CCCACTTCATGGGAACCACGGCCTGGTCACTACAATTCCTCTCCCTCCCT TTCCTTCCCCCCCGCCTCCTCCTCCTCCCCATCCACCTCCCCCTTCCCCA CACAACTTTCCCCTAGCGAGCTAAGGAAGGGCCATTGTTGAGGTCTCTAG TGACGTGGCCCGCACCTCGCCCCGTGTTGTTTCTTATAGTACTAGCGAGT GTAGGAAGTACTTTGTGTTCAGCATGGGCGGAGGGGGCAGGCCCGGGTTG ATGAGTCAGCCGACACATCCGCCATCGATTTTTTTGTCGGTTCCAATTTA CTTGATTGGCAGTCGTCTAGGGTATTTGACTATTCAGTATGGTCCCTGAT ATTCACACCTATACTACGTAGTGGAACAATTTTCAATTTTGGTGCAACTA CAAACGGCTCCATACTAAACGCGAGTAGTTTTATAAAAACGCCTCCTCGG TAAAAACGCCTGGCTCGGTGATTTCTTTAACACGCGGTTTTCCGATTGCG ACCGAGCGCGTGCGAACAAGCGATCGGCGCGGCCGAGCGACCCCACCAAC CTCTTCTCCAAGTCAAAACACCGCTAGGGGCACCCTCTCTTGGCCGACGG GCGGTTCTTAAAAAACAACAAAGCCAAACCCGAACTGTCACCACCCCCGA AAAGGGGCACCTACGTAGGTATAAATATGGCGGTCGATTCGATATTGCAC CGCTGCTGTGCGTGCACGTGCAGGTGCTTAAAGTGCCCTGCCCGCAAGCC GACGGCCGTGTATCAATAACACAGCCGCAGACTAGCATGGGTGGTGCGTA TTAGAAGGCCCGAATGAACTTGACCCGCAGGGTTGGGGCGATGCGGCTAT GCAGACAATGCGAGGCAACATCCCCAACCGGTAGAGTTGTGAACTGGCAA GGCCTACCAGTTTAACTGTTCACCGGTCCTGTGACCGGACGATTTTAACC GGTTGCCGGCAATGGCTAGTGTTTTGCCAAAATCAACGAATAACGGTGAT GTCACCCGCTCCGGCTACACGATTGGCCACCGGTCGGTATTTAAACCAGT AAACTGGTACCGACCGGTAAAAACCGGCATTAGTTCACAACACTGCCAAC CGGGGATCTTCCAGCAAGAACCTTCTCGAGGTCGGGCTTCGGGGCCAACC CTGTGACTGCGGCGCCGAATGGGGGGGGATCATGTCCATCACTTTCATGC GCCAATGAACCACGGTACTCTCTCCAAGCAAAGCGTACAGACAGTACAGT ACAGTAGTGTATGAAGTAGTTGCATCGGTTGCTGCCATCAGTATTGTTCA CTAGCCCCCCGGCAGACTGTGCCAAGCCATACAGCGAGAGACCTCAACAG TGGCCCTTCCTAATTAAAGCAGTGGCTTGAACAGCATCAACGTAGACTAC ACTTTTTTCCGGCAGGAGTTCAGGGCCCCGGTGGGGTGCCCGTGGGCCCA GCCTGTGGCTTACAGTGCCACATGTGTCCACACGATGTGCATGCCGTAGG TCGCATGGTTTTGCAAGCGGCTGCAGGCGCGATTGGATTGTCTTTTTCGT ATCCAGCTACGCTCACGGAACGACCTTGTTGTTGCCGATATCTCGTGTTG GTGGTTGGTCCGGTTTTCCTAGTATACCAGCAGCGCGTTTTCGGGCTATT CCGATTGTCCTAGGTACCGCGAAGCGTTTCCGGTCTGTAGAAGTTGGGGT CGATGTATTTGTCTCATCACGAGAGGCCACAATGTGCATAAACCAGATGA TGTTTGGTTGTAGCCGGTGTCACAACCATCCAAGCGACTCATCGGCTACG CCAGGCGGCGGCCCGTACCTCTAGCAGTAACTTACAAGTCTTCCAAGTAT CACGAGGAACAAAGACAGGCAGGGGGGGGCGGAGTACTTCGGGCCAGCAC TGCCCCCCCCCCCCTTGCACGGCTGCCCATCAACGGTGCCGCCCGGCCCC GTTTTTGCCTCTCCCTCCTCCATCCCCGCCGTTGCCAGAAACCGTGGTAC TCGCAAGCACTAATATAAGAACACTCAGCCCTCAAAGGGGACGACTACTG TACTGATGCGCGAACAGTCAATCTCACACACGTGCGGTTGTACCTCGTTA CTTTTTGCTTCGTATATTCAATCACCGCCAGAAACCGAGGACGCGGGTCG GCGAGATCATGGCCTACATCCACAGGCAGAAGGACGAGCTTGACGTGGTG GAGGAGAAGTGGACGAGCGGGCTGGGCATCGTCTGCACGATATTCGGGGC ACTGCTGCTGGTGATGCGGCTGGCGGTGGGGGACCTCCGCGGGGTTTCCC CCGAGCCCAGGAGGCCCGCACCGGAGCAGCGCCGAAGGAGCCGGACCGCA AGAAAGCCCCGGCACTAGGTAGGGTATATATATATATATGTGTGTGTACT CACGTGGTGCTTGCCGTAGTCCCGAGACCGTTGACCCCACGCCTCGTTCG AGGCGGAGCAGAACAGTACGAAGTATTAGCAGGAACAACACAGAGGTGAG GTGCGGGCCACGTCACTAGAGACCTCAGCAGTGGCCCTTCCTTATAGCTC GCCAGCACTAGTAAGTACGGTAGAGCTACTTGCTGTACTGTACTCTAGAG GGTTGGACCTGCGAGGAGACGACCACCCCTGGAGGCTTGCATTCCGACTC GGAGTCCGTTGAGGCGTTCTGGGCCGGGGCGCCATGCCCTGCAGATTCTG ATGCCGCAACCGCCGCGGGCATCCAGTGGCATGATGCTCACGGACTCTTT CAGAGTTGGGCCCAGGCAATGCAGGCACGGCCTACGCTTCTTCTTCGACA CGGTATCGGGCCGGGCCGGCTGGCTGTCTCTTGGGCTTGTATGAGCACTA CCCGACACAGTGATCAGTGTGGCTTAGCTGAGCACATACCGTACAGATGT AACTGTACTCGAGTAGGCATGAAACTGTCTTGGGTACCGCACGGACCTCC GGGGCGCGGCGCCCCCGGGGGGCCTCCGAGGCTGAGGAGCCGGGAGCCTT CAAGCTCCAGTGCACTAGAGATGCCGCCCGGCACGGAAAAGCCGCTTTGG CTGGATTGGATCGTGCGTGGCTTGGCTCCTCCCTTCGGGGGAAACCTCTT GCGCATCTGTAGACCTTTCAGAGTTGGCATGCCATGACAATCGTGTACTT CAACAAGCCTACTTGTACTACAGTAGAGATCTACAGTAGTGTGCTTTTTT TGCGGGTCTAGAGACCCCTGTCCCCCCCTGGCCGCGCGGTGCAGCCAGCG TATTGGCCGTGCGCTGCGGTTTCAGCGCGTGGTAGAAAATACATTACATT CAAAGTGTGGTGGCCGTGTCAAGTTTTTCAAGTTCTGGTGGCGGCCTGTT TTCCGAGTCCGCCGTGCCTTTGGATCCGAGTCTGTCACGGCGTCGGCGTG ACTCGGACCTGTAATATCACCTTTATAATTAGGAAAGTTTAAAAGCGGCG CTGGCAGCAAAACAACATCAGATCTTCTGCCAGCCACTGAGGGGACCTCC AGGGCATTGTTCGCGAACCGCTCTGGGTGGTGGCCCGGGAGCGCTTGTCA GAGCGCTTCAGGGCAGGGTTGGCACTTGCACAGAGGCTACTGTAGTTAGG GCCTAATTGGGCTTCATGATAGGTGTAAGTACCCCTAATTAAGTACATGT ACTCGAGTAGTTACTGTAAGGGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2604582..2609107-

>mRNA_S-ischiensis_contig9.20678.1 ID=mRNA_S-ischiensis_contig9.20678.1|Name=mRNA_S-ischiensis_contig9.20678.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1398bp|location=Sequence derived from alignment at S-ischiensis_contig9:2604582..2609107- (Schizocladia ischiensis KU_0333)
ATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTCCCTTCGCGAGTGCAGG
ACGAACGCCACCTCGGCACCTGCGAGAACTGAAGACCCCTAGTATTAGCT
CCCCCACATTAATATCATGGGCGTGGACGTTGTGCGCGGCAATGCTTGTG
CTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCGAGATGTGCAGGCTGCA
GTGCGATCCCGACGCATGCACGTTCCTGCGCAAGGTCTCCGGCGTGGAAG
AATGATTTGGCGAGGGAAGCGGTCAGAGGACCTTCCCTTCGCGAGTGCAG
GACGAACGCCACCTCGGCACCTGCGAGAACTGAAGACCCCTAGTATTAGC
TCCCCCACATTAATATCATGGGCGTGGACGTTGTGCGCGGCAATGCTTGT
GCTGTTTGGGGTGCGGCACTGCAGGAACAGCAGCGAGATGTGCAGGCTGC
AGTGCGATCCCGACGCATGCACGTTCCTGCGCAAGGTCTCCGGCGTGGAA
GAGTTTCGCCATGCCTTCCCTCGGGATCACTTAGTAAAGGCGGAGACCGT
GCGGGTGAGCGGCGGGAAGGTAGCAACGGGCAGAAAGCCAAACCGGCGCA
AGCAGAAGACGATGGGCCAAAGCTATTCTGTCACCTGGCGAACGTACGCC
GAGACTGGGCGGGAAACGGGCCACGTAACTGAGACTCTCAGCAATCGGGG
GCTTGGGCGCAAGGTTTCGCCATGCCTTCCCTCGGGATCACTTAGTAAAG
GCGGAGACCGTGCGGGTGAGCGGCGGGAAGGTAGCAACGGGCAGAAAGCC
AAACCGGCGCAAGCAGAAGACGATGGGCCAAAGCTATTCTGTCACCTGGC
GAACGTACGCCGAGACTGGGCGGGAAACGGGCCACGTAACTGAGACTCTC
AGCAATCGGGGGCTTGGGCGCAAGAAACCGAGGACGCGGGTCGGCGAGAT
CATGGCCTACATCCACAGGCAGAAGGACGAGCTTGACGTGGTGGAGGAGA
AGTGGACGAGCGGGCTGGGCATCGTCTGCACGATATTCGGGGCACTGCTG
CTGGTGATGCGGCTGGCGGTGGGGGACCTCCGCGGGGTTTCCCCCGAGCC
CAGGAGGCCCGCACCGGAGCAGCGCCGAAGGAGCCGGACCGCAAGAAAGC
CCCGGCACTAGAAACCGAGGACGCGGGTCGGCGAGATCATGGCCTACATC
CACAGGCAGAAGGACGAGCTTGACGTGGTGGAGGAGAAGTGGACGAGCGG
GCTGGGCATCGTCTGCACGATATTCGGGGCACTGCTGCTGGTGATGCGGC
TGGCGGTGGGGGACCTCCGCGGGGTTTCCCCCGAGCCCAGGAGGCCCGCA
CCGGAGCAGCGCCGAAGGAGCCGGACCGCAAGAAAGCCCCGGCACTAG
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