mRNA_S-ischiensis_contig9.20677.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20677.1
Unique NamemRNA_S-ischiensis_contig9.20677.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20677.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.670e-36
Identity = 71/128 (55.47%), Postives = 89/128 (69.53%), Query Frame = 2 
Query:  383 PVHITPNLDQSQQRRPKTMAVRDVNSYPNAVAVEHSSEIGAMAWAEFADWARRTVNRNVKGESTFQFDHRQWGSSIRKWWIRAVEADEQAKAEFYRLYGRGLQERDAWGRQAVEVDSKVEDEWDSIYL 766
            P+ ITPN    ++RRPK    +DV     A   E S +I AMAW EF+D+ RRTV RN+ G + F FD RQW SSIRKWW RAVE D QAKA+ +RLY   + +RDA G QA++VD++VEDEWDSIY+
Sbjct:   84 PLRITPNFQPQEKRRPKFNVDKDVTY--GAFLTEESFDIAAMAWEEFSDFLRRTVERNLNG-AQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDARGNQALKVDARVEDEWDSIYV 208
[Close]
BLAST of mRNA_S-ischiensis_contig9.20677.1 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.340e-16
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:  383 PVHITPNLDQSQQRRPK---TMAVRDVNSYPNAVAVE----HSSEIGAMAWAEFADWARRTVNRNVKGESTFQFDHRQWGSSIRKWWIRAVEADEQAKAEFYRLYGR 682
            P+ I  NL       P+    M  R+ ++Y NA  V+    H   + AMA AEF DW  RT+ RN++G + F+FD RQW +S+ KWW RA+EADE A+ EF R Y R
Sbjct:   67 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHA-FEFDTRQWQTSVAKWWGRALEADETARLEFARQYLR 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G502_ECTSI3.670e-3655.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHX3_9STRA5.340e-1643.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2591339..2595860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002390.1
Exons4
Model size853
Cds size705
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20677.1prot_S-ischiensis_contig9.20677.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2591339..2595712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.5210884-CDS-S-ischiensis_contig9:2591338..25914551622817395.5210884-CDS-S-ischiensis_contig9:2591338..2591455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2591339..2591455 -
1695741082.3344896-CDS-S-ischiensis_contig9:2591338..25914551695741082.3344896-CDS-S-ischiensis_contig9:2591338..2591455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2591339..2591455 -
1622817395.5336502-CDS-S-ischiensis_contig9:2592256..25923341622817395.5336502-CDS-S-ischiensis_contig9:2592256..2592334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2592257..2592334 -
1695741082.3442724-CDS-S-ischiensis_contig9:2592256..25923341695741082.3442724-CDS-S-ischiensis_contig9:2592256..2592334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2592257..2592334 -
1622817395.5468712-CDS-S-ischiensis_contig9:2593104..25932591622817395.5468712-CDS-S-ischiensis_contig9:2593104..2593259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2593105..2593259 -
1695741082.3560627-CDS-S-ischiensis_contig9:2593104..25932591695741082.3560627-CDS-S-ischiensis_contig9:2593104..2593259Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2593105..2593259 -
1622817395.5584867-CDS-S-ischiensis_contig9:2595357..25957121622817395.5584867-CDS-S-ischiensis_contig9:2595357..2595712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2595358..2595712 -
1695741082.3651397-CDS-S-ischiensis_contig9:2595357..25957121695741082.3651397-CDS-S-ischiensis_contig9:2595357..2595712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2595358..2595712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.5699084-UTR-S-ischiensis_contig9:2595712..25958601622817395.5699084-UTR-S-ischiensis_contig9:2595712..2595860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2595713..2595860 -
1695741082.3742354-UTR-S-ischiensis_contig9:2595712..25958601695741082.3742354-UTR-S-ischiensis_contig9:2595712..2595860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2595713..2595860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20677.1

>prot_S-ischiensis_contig9.20677.1 ID=prot_S-ischiensis_contig9.20677.1|Name=mRNA_S-ischiensis_contig9.20677.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=235bp
MKPIGVELLAVLACLNGLCTFGDAFTGPCRTLSILPRGVECPRRVRTTLA
GPRPAMDSSKDTGRRRGRPLASDDDRDDPVHITPNLDQSQQRRPKTMAVR
DVNSYPNAVAVEHSSEIGAMAWAEFADWARRTVNRNVKGESTFQFDHRQW
GSSIRKWWIRAVEADEQAKAEFYRLYGRGLQERDAWGRQAVEVDSKVEDE
WDSIYLGEGGQAAAHERSNAWGPLAMAARALAGGE
back to top

mRNA from alignment at S-ischiensis_contig9:2591339..2595860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20677.1 ID=mRNA_S-ischiensis_contig9.20677.1|Name=mRNA_S-ischiensis_contig9.20677.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4522bp|location=Sequence derived from alignment at S-ischiensis_contig9:2591339..2595860- (Schizocladia ischiensis KU_0333)
AGTGACTCGATGACTCACCCACGATAGGTGAGCACGTTGCGCGAGGGTGA
GGAGGTAGGAGAGCCCTTCTGCGTGCACTCCCAAGGCCCCCCTCCAGCCT
CCAGGGGGTGTCAGTAGCCTCCCTTTTCCGCTGCGTTTTTGTGGCGTAAT
GAAGCCGATTGGAGTCGAGCTGCTGGCCGTCCTGGCGTGCTTAAACGGGC
TCTGCACCTTTGGGGATGCCTTCACAGGCCCTTGCAGGACATTATCTATC
CTCCCGCGCGGTGTGGAATGCCCGCGACGAGTGCGCACAACGCTTGCCGG
CCCCCGGCCAGCGATGGACTCGTCCAAAGACACAGGCCGGCGGCGAGGGA
GGCCACTGGCGTCCGACGATGACAGAGATGATCCAGTGCACATCACGCCG
AACTTGGATCAAAGCCAGCAGCGGCGGCCCAAGACTATGGCTGTTAGGGA
TGTCAACAGCTACCCAAACGCAGTGGCCGTGGAACACAGCTCAGAGATAG
GGGGTGAGTGGCCGGTGCAAAACACGAAAGGGATAAGGGCCGGGTCTCCA
CGTCTCCCGCCCTGAGAAGGGCTGCAACGTGTTGGTGTGCGTATGATACG
TGCAGGGAACGCCCTGTTTCCACAGAAGTGGAGTCCTTTGTCTATTAGCT
GTAGGTAGGGTTGGCAGACGAAGCCGCTTGAACGTTTGCTCTGGAATCGT
CTCCAATACCGGCCCCCCTTTGCAATGTTTGGCGATCGGGGGACGTTACG
CTGGCAATGTATAACCCCCCCCCCACCCCACCCTCCCTCCCCCCGCGGCT
TTTACTGACCTCAGAGGATCTCTCCAACAGTTTCTCACAGACTACCCCCC
CCCGATACATCATACTTCAGTGGCTGCTTAAACACCCCTGGCTTCCTGCA
CACGCCCAAAGGGAAAAAAATCGTCCGATAACGGTGTCCTGCTGCGTGCC
CTCTCAATTTCTCGGCCGCTTAAGCTACAAATACTCCATCCCACGGGCAG
AACGGCCGGCTACGGTGGCTGTCACGAACCCGAAACGTTATGCGGGCACA
CTCCGTCTCACAAGCACCTCGCAAAAATGGCTTTTCGAGCAAAAATAGCA
AGCGAGAGGAGAAAAGGAGGTGTCTCTATTTTGCGTGAGCTCCAGCATAT
GTGTATGTGTCACCCAACACATATTCGTTGCCGGCAATGTATTGCAGTGT
TTTTTCACGTAGGTTTTGCCTCCTGGGCCGTCGGTGGATGGGCCCTCGAA
GCCAGAGCTTGACCTTGAAAAATTGTTGACTGGCGTCAAGGCGTTTTCCA
AAGTGTTGGAACAAAGGGAGGACATTTATTTTGCATGTATATATGTTATC
AATGGTCTCGGGAGTACACATATATAGTGGTCTTGGGCCTACGGCAAGCG
CAAAGTGAGTGCATACTACTAGTATATACAAGTACGTCGAAGTATGATAC
GTACTGTAGTACTTTGAAGTATATATTATCAGCACACCGGGGGGGATATG
GAAATGGCAGCCCCTCCCCTTGTCGGAGGAGGTGTCCCCCCCCTCTCCCA
CACCAAATACGTTCTGCCAGGGGAGGAGGGGGCCTGCTCTGCCTCGGTCG
AGACGGGTCGTGGGACGGCGGCAAGCGCAGTGTGAGTACATATGTATTCG
TACACGAGTATGTGTTTGAAGAGTATATACGTGAGTACATATACATACAT
GGAAGTATCATACTTCGAGGTATATGTACGAGAGTCCATGCCTAAATAGC
TACTCCTGCCGGAGGGCAAACACGAAGTTTCGACTTCGGGCTGTCGGCAT
TGCACGCAAGTTTATGTCGCAAGACAAACCAATGAGTACATATATATATA
TATCAAGTATCAGCATACCTGCTCCTTCTCGGTCGAGGTGCTGTAGTAGG
GGTCAATGGTCTCGGGACTACTACTGCAGTAGTAGTACAGCAAGCACAGC
GTGAGTACTCACACTTTTGTATACACGAGTACTAATGTAACTTCCGATGT
TAGTCTCCCAACTACTTTGTTTGTTTGAAACTCAAGTCTCCTAACTATTG
TTGTTTGAAACTCAAGTCTCCTAACTACTTGGAACATTTTGAATAATGGT
CTCGGGACTGCAGCAAGCGCAGTGTGAGTACTCGAGTACGACTACATACT
CGAAGTATACGAGTATAAACACACACACACATATATATATATATACATAT
GTACTCACGTGGTGCTTGCCATAGTCCCGAGACCATTGACCCCGCGCCTC
GTACTTCGTATATTCGAGCACGAAATTCAGCCCCGGCCGGCCGTAACTGC
AAGAATTTTGCGAAAACCCGTGTAACCGCTTGACCGTTTCGAAGGCGGGA
GTTGCGGACAGCCACCGATGTATCTGCACCTTCCCCATCGTGCTCTCGCC
TTGGCGCCTCGGCCCTAGCACAACCCTCCCCCCCCCCCTTCCCCCCCCCC
TCTCTCTCTCTCTATATATATGTATCTTCTCCCTCCCTCCCTCCCTCTCT
CGCTCCCTCTCTCTCGCTTCCTCTCTCTCTCTCTCTGTGTCTCTGTTTCT
CTCTCTCTCCAAATCTCCCCCCCCCCCCCCCTCTTCTCTCTCTCCCTGCA
GCCATGGCATGGGCCGAGTTTGCCGACTGGGCCCGGCGAACAGTTAACCG
TAACGTCAAGGGGGAGAGCACTTTTCAGTTTGACCACAGGCAATGGGGCA
GCAGCATCAGGAAATGGTGGATACGGGCCGTGGAGGCTGATGAGCAGGCT
AAAGCGGTGGGTTTACTAGTAGTCCATTCGTCCCCGCCGCAAAGCGGCGC
GCCCTTGTTATGATTCATGTAGATTGTAACGAGGTACAATCGCACGTGTG
TGAGAGTTGAGTGTTCTCGTAGTAGTGGTTCACGGTGATCCATATAAATT
GTAGCGAGGTACAATCGCACGTATGTGAGAGTTGAGTGTTCTCGTATTAG
TCGCTAGCGGTGATCCATTTGAATTCTAACGAGGTACAAACGCACGTGTG
TGGGAGTTGAGCGTTCTCGTATTAGCCATTTTTCTCTGCGAAAGGTTCTG
TTGAGTTGCGCGCGTATCCGCTGCAGCGCCACAGCACTCGCTGTACCTAA
GTGGAAAGAATCTCGAGTGCACTTCACGGGCGTGTGTATGCTTTTGAGTA
CTCTACCTCGGGGTAGGACGGGAGACCAGGAACGCCGTTTACTGCGACAG
TACTGCACTGCATTGGCTGATAGCGCCTGGTAAGCCGAGTGAGCCTTGAT
TAGTGAAGCAATTGTACCGTCCCGGCCTACTTGGGATGTGAGAGTCCATG
GCTAAATAGCTATGTACTCGTACTCCTGTCGGAGGAGTTTCGACTTGGGG
CTGTCGGCAGTGCACACAATGTTTTTTGTCGCAAGACAAGCCAATTGAGT
ACTGTGAAACGAGCCAATGAGTGCAGCAGCGCACAATTCAAGCCGAGCAA
AGTAAAACGAGGGAAAAACCGTGACGTTCCGCCAAAATGCCCGCCGGGTG
TAAATTGTCGCGTGCCATCGTCGCAGGAGTTCTATCGCCTGTACGGGCGT
GGCCTGCAGGAGCGGGACGCCTGGGGCCGGCAGGCTGTGGAGGTGGACTC
CAAGGTGTGTGTGGACTACGGGGGAGGGGGGGGGGGGGGGGGGTTAGTTG
GGGTACCCACGCCTATGTAGCTTGGTGGACGCCAGGCAATCATTCTTGGA
GTCAAGTTCGTGCTACCCCGTTCACTATCGATTCGGTTTATATTTGTGTG
TGTGTATGTGTGCGCTTGTGCTCATTGACTTGCCTTGGGAAATAGCCGTG
CGCGCGTTCTCCTGCGCAGGATGAAGTTACACCTCGGGTTTGTCCTCCTG
CTGGAGTACTGCGACAGTAGCTGTTGCTGCTGCAAATAGCCATTTTCTTG
CTCTCAACTATAGCATGGTTGTAGTTGAAACCTCTTGAGGACCGTTTGCT
AAGTACTTGGTATATTATATAGTTACCAAACCTAGCCCTCCTTCTGGAGC
ACTGTAGTAGGCTTGCTACATGTAGTGCCATTGACTCTCAACTATGCCAT
GGATATAGGGCCTGGAACTCGCCGCTCATCTACCACTCAAAATAGAGCCT
CTACTGTAGTTGAGGCCACTCGAGAACTGTTTGCTATGCTGTACGAGTAT
ATACTTCGTACATACTTCGAAGTATATGTACTCACATTGTGCTTGCCGTA
GTCCCGAGACCATTGACCGCGCGCCTCTGCCGAGACACTGTATAGCTAAG
TCAACACTCCGGGTTTGCCCCCCTGCAGGAGTAGCTATTGAGCCGCGAGT
ACTTACTTCGAAGTACTCGTACATGTATCTGCTACAGTATTCAGACATGT
ATGGAATCCCAACAAGTTTCATGTTTTGGGTGCCCATCCCCCCCCCTGCC
CCAAGGTGGAGGATGAGTGGGACAGCATCTACCTGGGCGAGGGCGGCCAG
GCAGCCGCACACGAACGTAGCAACGCCTGGGGGCCCCTTGCAATGGCGGC
AAGGGCTTTGGCGGGGGGGGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2591339..2595860-

>mRNA_S-ischiensis_contig9.20677.1 ID=mRNA_S-ischiensis_contig9.20677.1|Name=mRNA_S-ischiensis_contig9.20677.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1410bp|location=Sequence derived from alignment at S-ischiensis_contig9:2591339..2595860- (Schizocladia ischiensis KU_0333)
ATGAAGCCGATTGGAGTCGAGCTGCTGGCCGTCCTGGCGTGCTTAAACGG
GCTCTGCACCTTTGGGGATGCCTTCACAGGCCCTTGCAGGACATTATCTA
TCCTCCCGCGCGGTGTGGAATGCCCGCGACGAGTGCGCACAACGCTTGCC
GGCCCCCGGCCAGCGATGGACTCGTCCAAAGACACAGGCCGGCGGCGAGG
GAGGCCACTGGCGTCCGACGATGACAGAGATGATCCAGTGCACATCACGC
CGAACTTGGATCAAAGCCAGCAGCGGCGGCCCAAGACTATGGCTGTTAGG
GATGTCAACAGCTACCCAAACGCAGTGGCCGTGGAACACAGCTCAGAGAT
AGGGGATGAAGCCGATTGGAGTCGAGCTGCTGGCCGTCCTGGCGTGCTTA
AACGGGCTCTGCACCTTTGGGGATGCCTTCACAGGCCCTTGCAGGACATT
ATCTATCCTCCCGCGCGGTGTGGAATGCCCGCGACGAGTGCGCACAACGC
TTGCCGGCCCCCGGCCAGCGATGGACTCGTCCAAAGACACAGGCCGGCGG
CGAGGGAGGCCACTGGCGTCCGACGATGACAGAGATGATCCAGTGCACAT
CACGCCGAACTTGGATCAAAGCCAGCAGCGGCGGCCCAAGACTATGGCTG
TTAGGGATGTCAACAGCTACCCAAACGCAGTGGCCGTGGAACACAGCTCA
GAGATAGGGGCCATGGCATGGGCCGAGTTTGCCGACTGGGCCCGGCGAAC
AGTTAACCGTAACGTCAAGGGGGAGAGCACTTTTCAGTTTGACCACAGGC
AATGGGGCAGCAGCATCAGGAAATGGTGGATACGGGCCGTGGAGGCTGAT
GAGCAGGCTAAAGCGCCATGGCATGGGCCGAGTTTGCCGACTGGGCCCGG
CGAACAGTTAACCGTAACGTCAAGGGGGAGAGCACTTTTCAGTTTGACCA
CAGGCAATGGGGCAGCAGCATCAGGAAATGGTGGATACGGGCCGTGGAGG
CTGATGAGCAGGCTAAAGCGGAGTTCTATCGCCTGTACGGGCGTGGCCTG
CAGGAGCGGGACGCCTGGGGCCGGCAGGCTGTGGAGGTGGACTCCAAGGA
GTTCTATCGCCTGTACGGGCGTGGCCTGCAGGAGCGGGACGCCTGGGGCC
GGCAGGCTGTGGAGGTGGACTCCAAGGTGGAGGATGAGTGGGACAGCATC
TACCTGGGCGAGGGCGGCCAGGCAGCCGCACACGAACGTAGCAACGCCTG
GGGGCCCCTTGCAATGGCGGCAAGGGCTTTGGCGGGGGGGGAGGTGGAGG
ATGAGTGGGACAGCATCTACCTGGGCGAGGGCGGCCAGGCAGCCGCACAC
GAACGTAGCAACGCCTGGGGGCCCCTTGCAATGGCGGCAAGGGCTTTGGC
GGGGGGGGAG
back to top