mRNA_S-ischiensis_contig9.20414.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20414.1
Unique NamemRNA_S-ischiensis_contig9.20414.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A6H5KXS9_9PHAE (HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXS9_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 5.080e-105
Identity = 184/354 (51.98%), Postives = 230/354 (64.97%), Query Frame = 3
Query:  183 FFFNGLGSHGPQGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLE---GGTPPPSDAD--DLLSALFGRAPQSGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQ-KMEGGRAKKVPKELDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRM---GAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLPPKPSFAKSKGATSAGEGVDLAPAEASVAERIKEGTFGDDAR 1217
            F F G+ S G    VDNE YYK+L V K ADA +I +AYR+LA K HPDKGGDPE+FK L EAYEVLSD EKRR YD+ GK GL+   GGT         DL  + FGR  Q  P R RD  Y++EV+LE+LC G  ++VR+W +  +EGGR ++V ++++I +  GM TG+R+VM G VD    G+ PGDLVFV++ET+H  F R+     HL+A+IT+TLAEAL GFVR I L DGRTV++KS+EG V++PG VRKL GCGMPV   +K         GDLYL F V FPS     AW E++R  L  LLPPKP F K K    A   V++ PAE SVA R K G +    R
Sbjct:   50 FSFGGMPS-GFNTRVDNEGYYKILEVGKTADAGSITKAYRKLAKKKHPDKGGDPEEFKALAEAYEVLSDPEKRRLYDQVGKEGLQAGGGGTGMDQSRQQADLFRSFFGRFSQPQPVRMRDVVYEMEVTLEELCNGGEKKVRIWSEVPLEGGRTERVARDIEISLTAGMTTGTRIVMEGGVDPIEEGIQPGDLVFVLRETRHRTFRRLTGDSPHLTADITVTLAEALTGFVRSISLVDGRTVFFKSKEGEVISPGAVRKLPGCGMPVGERQK---------GDLYLRFVVEFPSEEVSSAWREEERKSLQDLLPPKPKFPKEKPDNPA---VEILPAEPSVASRFKAGLYDKPPR 390          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A835Z5S2_9STRA (Putative molecular chaperone (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.570e-70
Identity = 137/247 (55.47%), Postives = 166/247 (67.21%), Query Frame = 3
Query:  216 QGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDK-GGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEG---GTPPPSD--ADDLLSALFGRAP--------------QSGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGGRAKKV--PKELDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPV----FTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTV 878
            +G VDN+ YY  LGV KGAD  AIK+AYRRLA+K+HPDK GGDPE+FK LGEAY VLSD +KRRTYD+YGKA L+G   G+ P S   A+D+ SALFG                 +S PR A D TY+LEV L DL  G +RRVRVW QK+ GG    V  PK++DI IE+GMR G+ VV+ GE D G  G+APGDLVFV++E         FTR+G HL  ++ LTLAEALLGF RP+   DG T+
Sbjct:    5 RGPVDNQGYYDCLGVSKGADDNAIKKAYRRLAVKLHPDKEGGDPERFKELGEAYAVLSDPDKRRTYDQYGKAALDGSGGGSAPQSTDFAEDIFSALFGXXXXXXXXXXXXXXXGFRSAPR-APDATYELEVPLADLYSGATRRVRVWTQKVGGGGGAPVRAPKDVDIVIERGMRAGAAVVLKGEQDPGIPGIAPGDLVFVLREAPPDANGGGFTRVGDHLVVDVELTLAEALLGFCRPLCHLDGTTI 250          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A4D9CTQ4_9STRA (J domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ4_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.680e-63
Identity = 134/320 (41.88%), Postives = 185/320 (57.81%), Query Frame = 3
Query:  219 GAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLE------GGTPPPSDADDLLSALFGRAPQ------SGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGGRAKKVPKELDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLPPKPSFAKSKGATSAGE 1142
            G  D   YY  LG+ K +  + +KRAYRRL +++HPDKGGD + FK L EAYEVLSD  KRR YD YGKAG+E      GG P     +D+ S+ FG           GPRR+ +   Q+E++LE+L +G +R+VR+ +QK+   R    PK L+   E+GM+ G+R+V+ GE + G    APGD+V  ++E KHP F R  A L  E+ +TL EAL GF RP+   DGR ++ K + G V  PG V  L+G GMPV         SL   G L++ F V FP  +     T+++ + L  +LP  P+F + K A  A E
Sbjct:   63 GDSDQGGYYATLGIPKTSTLSEVKRAYRRLVVRLHPDKGGDEKAFKALQEAYEVLSDPAKRRLYDAYGKAGVEMGSGAQGGRP-----EDVFSSFFGSGRARGFGGTGGPRRSPNLYLQVELTLEELFKGATRKVRLNRQKVVDRRLVVEPKVLEAAFERGMQDGARLVLAGEAE-GLGNAAPGDIVIQVRELKHPTFVRRNADLLCEMKVTLTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVWLLEGEGMPVRGEP-----SL--RGRLFIKFAVVFPPSLA--NLTKEEVERLKAVLPKAPAFVRGKEAEEAEE 367          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: K8Z668_NANGC (Molecular chaperone (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z668_NANGC)

HSP 1 Score: 208 bits (530), Expect = 4.100e-60
Identity = 123/283 (43.46%), Postives = 167/283 (59.01%), Query Frame = 3
Query:  219 GAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLE------GGTPPPSDADDLLSALFGRAPQ------SGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGGRAKKVPKELDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFP 1031
            G  D   YY  LG+ K +  + +KRAYRRL +++HPDKGGD + FK L EAYEVLSD  KRR YD YGKAG+E      GG P     +D+ S+ FG           GPRR+ +   Q+E++LE+L +G +R+VR+ +QK+   R    PK L+   E+GM+ G+R+V+ GE + G    APGD++  ++E KHP F R  A L  E+ +TL EAL GF RP+   DGR ++ K + G V  PG V  L+G GMPV         SL   G L++ F V FP
Sbjct:   63 GDSDQGGYYATLGIPKTSTLSEVKRAYRRLVVRLHPDKGGDEKAFKALQEAYEVLSDPAKRRLYDAYGKAGVEMGSGAQGGRP-----EDVFSSFFGSGRARGFGGTGGPRRSPNLYLQVELTLEELFKGATRKVRLNRQKVVDRRLVVEPKVLEAAFERGMQDGARLVLAGEAE-GLGNAAPGDIIIQVRELKHPTFVRRNADLLCEMKVTLTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVWLLEGEGMPVRGEP-----SL--RGRLFIKFAVVFP 332          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: F0WJP4_9STRA (Uncharacterized protein AlNc14C124G6770 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJP4_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.250e-56
Identity = 135/375 (36.00%), Postives = 191/375 (50.93%), Query Frame = 3
Query:  183 FFFNGLGSHGPQGA--VDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALF--GRAPQSGPRRARDETYQLEVSLEDL----------------------------------CRGRSRRVRVWK------QKMEGG--------------------RAKKVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLPPKPS 1106
            FF  G    G   +  VDN ++Y++LGV K A    IK++YR+LA+K HPDKGGDPE FK +  AYEVLSD EKR  YD+YG+ GL+ G    +DA DL S  F  G   ++GP++  D T+ L+VSLEDL                                  C+GR  RV++ +      Q+M+                      + KKV KE   L++ IEKGMR G R+   GE D  A GV PGD++FVI+E +H +F R G +L  E  ++L E+L GF   +   DGR ++ K+  G ++ P   + ++G GMP H +           G L + F ++FP   +  + TE+    L  +LPP PS
Sbjct:    9 FFGGGFDGGGASASKPVDNNKFYEILGVSKTATPTEIKKSYRKLALKNHPDKGGDPELFKHMTVAYEVLSDPEKRELYDQYGEEGLQNGAGG-ADASDLFSQFFKGGSRRRAGPQKGEDLTHPLKVSLEDLYNGKTVKLAVNRDVLCGRCDGRGGAEGAEKTCDTCQGRGMRVQLRQIGPGMVQQMQSVXXXXXXXXKTIRESDRCKTCKGKKVTKERKVLEVNIEKGMRHGQRITFSGEADQ-APGVLPGDIIFVIQEKEHTIFQRKGGNLIMEKKISLVESLCGFEAIVEHLDGRHLHVKTNPGEIIKPNHFKSIQGEGMPTHGNPFIK-------GQLVIMFKIQFP---ETGSLTEKQLSTLRSVLPPAPS 371          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A2D4BE28_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BE28_PYTIN)

HSP 1 Score: 201 bits (510), Expect = 3.370e-56
Identity = 137/372 (36.83%), Postives = 187/372 (50.27%), Query Frame = 3
Query:  183 FFFNGL--GSHGPQGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALFGRAPQ--SGPRRARDETYQLEVSLEDL----------------------------------CRGRSRRVRVWK------QKMEGG--------------------RAKKVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLPP 1097
            FF  G   G   P   VDN +YY+ LGV K A AA IK+AYR+LA+K HPDKGGDPE FK +  AYEVLSD+EKR  YD+YG+ GL+ G    +DA DL S  F   P+  +GP++  D T+ L+VSLEDL                                  C GR  RV++ +      Q+M+                      + KKV KE   L++ IEKGMR G R+   GE D  A G  PGD++FV++E +H +F R G +L  E  ++L EAL GF   +   DGR ++ K+  G ++ P   + + G GMP H +           G L + F V+FP    +   +E+    L  +LPP
Sbjct:    9 FFGGGFEGGQMPPSKPVDNNKYYETLGVPKNATAADIKKAYRKLALKNHPDKGGDPELFKQITVAYEVLSDQEKRELYDQYGEEGLQNGGGA-ADASDLFSQFFRGGPRRRTGPQKGEDLTHPLKVSLEDLYNGKTVKLAVNRDVLCGRCEGRGGAEGAEKVCDTCHGRGMRVQMRQLGPGMVQQMQSVXXXXXXQGKTIREADRCKACKGKKVTKERKVLEVHIEKGMRHGQRITFAGEADQ-APGTIPGDIIFVVQEKEHSIFQRKGGNLIMEKKISLVEALCGFEMIVEHLDGRHLHVKTRPGEIIKPNQFKAVHGEGMPTHGNPFVK-------GQLVIVFKVQFPESGSL---SEKQLSTLKAVLPP 368          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A485KLS9_9STRA (Aste57867_8971 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLS9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.680e-55
Identity = 141/370 (38.11%), Postives = 178/370 (48.11%), Query Frame = 3
Query:  189 FNGLGSHGPQGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALFGRAP-QSGPRRARDETYQLEVSLEDL----------------------------------CRGRSRRVRV---------------------WKQKMEGGRAK-----KVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLP-PKP 1103
            F G G  GP   VDN  +Y+ LGV K A AA IK+AYR+LA+K HPDKGGDPE FK +  AYE LSD +KR  YDKYG+ GL+ G        D+ S +FG    Q GP+R  D T+ L+VSLEDL                                  C GR  RV++                      K   E  R K     KV KE   L++ IEKGMR G R+   GE D  A GV  GD+VFV++E +H VF R G +L  E  ++L EAL GF   +   DGR ++ KS  G V+ P   + + G GMP H +           G L + F V FP+ V     T +    L  + P PKP
Sbjct:   17 FEGHGHGGPSKPVDNTSFYETLGVPKNASAADIKKAYRKLALKNHPDKGGDPELFKNITVAYEALSDPDKRELYDKYGEEGLQQGGGGGHPGADIFSQMFGGGGRQRGPQRGEDLTHPLKVSLEDLYNGKTVKLAVNRDVLCGGCSGRGGPEGAETSCNTCNGRGMRVQLRQIAPGMVQQVQSVCPDCRGQGKSIREADRCKVCKGNKVTKERKVLEVHIEKGMRHGQRITFKGEADQ-APGVQAGDIVFVVQEKEHSVFQRKGGNLIMEQKISLVEALCGFETIVEHLDGRHLHVKSVAGEVIKPNQFKAVHGEGMPQHGNPFVK-------GQLVILFKVEFPNTV-----TPEQMRTLKTIFPAPKP 373          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A6G0WI73_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI73_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.240e-55
Identity = 136/363 (37.47%), Postives = 176/363 (48.48%), Query Frame = 3
Query:  210 GPQGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALFGRAPQS-GPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGG------------------------------------------------------------RAKKVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLP-PKP 1103
            GP G VDN+ YY+ LGV K A AA IK+AYR+LA+K HPDKGGDPE FK    AYEVLSD +KR  YDKYG+ GL+ G        D+ S +FG   ++ GP R  D T+ L+VSLEDL  G++ ++ V +  + GG                                                            +  KV KE   L++ IEKGMR G R+   GE D  A G+  GD+VFV++E +H VF R G +L  E  +TL EAL GF   +   DGR ++ KS  G V+ P   + + G GMP H +           G L + F V FP  V     T     +L  L P PKP
Sbjct:   18 GPSGPVDNDAYYETLGVPKTASAADIKKAYRKLALKNHPDKGGDPELFKNFTVAYEVLSDPDKRELYDKYGEEGLQQGGGGGHPGADIFSQMFGGGMRNRGPARGEDLTHPLKVSLEDLYNGKTVKLAVNRDVLCGGCNGRGGPEGAETTXXXXXGRGMRIQMRQIAPGMVQQVQSVCSDCRGQGKTIRESDKCKVCKGNKVTKERKVLEVHIEKGMRNGQRITFKGEADQ-APGLIAGDIVFVVQEKEHSVFQRKGGNLIMEKKITLVEALCGFETIVEHLDGRHLHIKSIAGEVIKPNQFKAVHGEGMPQHGNPFVK-------GQLVILFKVEFPQTV-----TPDQSRLLKSLFPGPKP 367          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: A0A024GQK4_9STRA (Uncharacterized protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024GQK4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 5.830e-54
Identity = 136/375 (36.27%), Postives = 191/375 (50.93%), Query Frame = 3
Query:  183 FFFNGLGSHGPQGA--VDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALF--GRAPQSGPRRARDETYQLEVSLEDL----------------------------------CRGRSRRVRVWK------QKMEG--------------------GRAKKVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKLLPPKPS 1106
            FF  G    G   +  VDN ++Y++LGV K A A  IK++YR+LA+K HPDKGGDPE FK +  AYEVLSD EKR  YD+YG+ GL+ G    +DA DL S  F  G   ++GP++  D T+ L+VSLEDL                                  C+GR  RV++ +      Q+M+                        KKV KE   L++ IEKGMR G R+   GE D  A GV PGD++FVI+E +H +F R G +L  E  ++L E+L GF   +   DGR ++ K+  G ++ P   + ++G GMP H +           G L + F ++FP   +  + TE+    L  +LPP PS
Sbjct:  503 FFGGGFDGGGASASKPVDNNKFYEILGVSKTATATEIKKSYRKLALKNHPDKGGDPELFKHMTVAYEVLSDPEKRELYDQYGEEGLQNGAGG-ADASDLFSQFFKGGSRRRTGPQKGEDLTHPLKVSLEDLYNGKTVKLAVNRDVLCSRCDGRGGAEGAEKTCDTCQGRGMRVQLRQIGPGMVQQMQSVXXXXXXXXXXXXXXXXXXXXXGKKVTKERKVLEVNIEKGMRHGQRITFSGEADQ-APGVLPGDIIFVIQEKEHSIFQRKGGNLIMEKKISLVESLCGFEAIVEHLDGRHLHIKTNPGEIIKPNQFKSIQGEGMPTHGNPFIK-------GQLVIMFKIQFP---ESGSMTEKQLSTLRSVLPPAPS 865          
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Match: W7TUD3_9STRA (HSP40/DnaJ heat shock protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUD3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.430e-52
Identity = 136/400 (34.00%), Postives = 193/400 (48.25%), Query Frame = 3
Query:  237 EYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGGDPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALFG--RAPQSGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGG------------------------------------------------------------RAKKVPKE---LDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMGAHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKGCGMPVHASEKEAHESLDPHGDLYLHFHVRFP-SRVQVHAWTEQDRDVLAKLLPPKPSFAKSKGATSAGEGVDLAPAEASVAERIKEGTFGDDAREQEGPHM 1238
            E+YK+LGV   A+   IK+AYR+LA+K HPDKGGDPE+FK +  AYEVLSD EKR+ YD+YGK GLE G+    + +D+ S  FG  R   SGPR+  D  + L+V+L+DL  G+   + + + K+ G                                                             R +KV KE   L++ IEKGM+   ++  HGE D  A G  PGD++F+++E  H VFTR    L  E TLTL EAL+G+       DGR +   ++ G ++ PGD+R ++G GMP+H S           G L++ F V FP S     A  +    VL   + PK         T   E VDL P +A+      +G+  D+  +  G  +
Sbjct:   72 EFYKILGVNTDANEGDIKKAYRKLALKNHPDKGGDPEKFKEITMAYEVLSDPEKRKRYDQYGKDGLEEGSM--HNPEDIFSMFFGGGRRGPSGPRKGEDIRHPLKVTLDDLYNGKKCHLAINRDKLCGACEGLGGKKGAERSCSTCNGRGVTVQLRQIGPGMVQQSQMPXXXXXXXXXXXSEKDKCRECRGRKVVKERKLLEVHIEKGMKHNQKITFHGEADE-APGTIPGDIIFLVQEKDHEVFTRKNNDLFMEKTLTLTEALVGYDFLFTHLDGRVIKCGNQPGEIIKPGDIRMVQGEGMPIHGSPFTK-------GRLFIVFKVEFPPSGAFDAAQLKALEAVLPSRVVPK--------VTGEEEEVDLVPVDANQIGAGDDGSAMDEDEDGRGQRV 453          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS9_9PHAE5.080e-10551.98HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A835Z5S2_9STRA1.570e-7055.47Putative molecular chaperone (Fragment) n=1 Tax=Tr... [more]
A0A4D9CTQ4_9STRA3.680e-6341.88J domain-containing protein n=1 Tax=Nannochloropsi... [more]
K8Z668_NANGC4.100e-6043.46Molecular chaperone (Fragment) n=2 Tax=Nannochloro... [more]
F0WJP4_9STRA1.250e-5636.00Uncharacterized protein AlNc14C124G6770 n=1 Tax=Al... [more]
A0A2D4BE28_PYTIN3.370e-5636.83Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
A0A485KLS9_9STRA2.680e-5538.11Aste57867_8971 protein n=2 Tax=Aphanomyces stellat... [more]
A0A6G0WI73_9STRA3.240e-5537.47Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A024GQK4_9STRA5.830e-5436.27Uncharacterized protein n=4 Tax=Albugo candida Tax... [more]
W7TUD3_9STRA1.430e-5234.00HSP40/DnaJ heat shock protein n=3 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:291072..298600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue4.9e-51
Seed eggNOG ortholog65071.PYU1_T014631
KEGG koko:K09503
KEGG Pathwayko04141,map04141
EggNOG free text desc.Heat shock protein 40. Source PGD
EggNOG OGs1MBBX@121069,COG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-19_004230.1
Exons8
Model size1344
Cds size1233
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20414.1prot_S-ischiensis_contig9.20414.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 291145..298562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.4958947-UTR-S-ischiensis_contig9:291071..2911441622817376.4958947-UTR-S-ischiensis_contig9:291071..291144Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 291072..291144 -
1695741066.5273888-UTR-S-ischiensis_contig9:291071..2911441695741066.5273888-UTR-S-ischiensis_contig9:291071..291144Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 291072..291144 -
1622817376.6002285-UTR-S-ischiensis_contig9:298562..2986001622817376.6002285-UTR-S-ischiensis_contig9:298562..298600Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 298563..298600 -
1695741066.6382954-UTR-S-ischiensis_contig9:298562..2986001695741066.6382954-UTR-S-ischiensis_contig9:298562..298600Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 298563..298600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.5080888-CDS-S-ischiensis_contig9:291144..2913721622817376.5080888-CDS-S-ischiensis_contig9:291144..291372Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 291145..291372 -
1695741066.5427272-CDS-S-ischiensis_contig9:291144..2913721695741066.5427272-CDS-S-ischiensis_contig9:291144..291372Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 291145..291372 -
1622817376.5202026-CDS-S-ischiensis_contig9:291620..2917281622817376.5202026-CDS-S-ischiensis_contig9:291620..291728Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 291621..291728 -
1695741066.5544164-CDS-S-ischiensis_contig9:291620..2917281695741066.5544164-CDS-S-ischiensis_contig9:291620..291728Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 291621..291728 -
1622817376.5316544-CDS-S-ischiensis_contig9:293121..2932291622817376.5316544-CDS-S-ischiensis_contig9:293121..293229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 293122..293229 -
1695741066.5688174-CDS-S-ischiensis_contig9:293121..2932291695741066.5688174-CDS-S-ischiensis_contig9:293121..293229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 293122..293229 -
1622817376.5439115-CDS-S-ischiensis_contig9:294756..2949091622817376.5439115-CDS-S-ischiensis_contig9:294756..294909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 294757..294909 -
1695741066.5819545-CDS-S-ischiensis_contig9:294756..2949091695741066.5819545-CDS-S-ischiensis_contig9:294756..294909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 294757..294909 -
1622817376.555622-CDS-S-ischiensis_contig9:295270..2954411622817376.555622-CDS-S-ischiensis_contig9:295270..295441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 295271..295441 -
1695741066.5958354-CDS-S-ischiensis_contig9:295270..2954411695741066.5958354-CDS-S-ischiensis_contig9:295270..295441Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 295271..295441 -
1622817376.566915-CDS-S-ischiensis_contig9:296651..2967771622817376.566915-CDS-S-ischiensis_contig9:296651..296777Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 296652..296777 -
1695741066.6057343-CDS-S-ischiensis_contig9:296651..2967771695741066.6057343-CDS-S-ischiensis_contig9:296651..296777Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 296652..296777 -
1622817376.5778913-CDS-S-ischiensis_contig9:297367..2974961622817376.5778913-CDS-S-ischiensis_contig9:297367..297496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 297368..297496 -
1695741066.6151314-CDS-S-ischiensis_contig9:297367..2974961695741066.6151314-CDS-S-ischiensis_contig9:297367..297496Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 297368..297496 -
1622817376.5892253-CDS-S-ischiensis_contig9:298352..2985621622817376.5892253-CDS-S-ischiensis_contig9:298352..298562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 298353..298562 -
1695741066.626071-CDS-S-ischiensis_contig9:298352..2985621695741066.626071-CDS-S-ischiensis_contig9:298352..298562Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 298353..298562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20414.1

>prot_S-ischiensis_contig9.20414.1 ID=prot_S-ischiensis_contig9.20414.1|Name=mRNA_S-ischiensis_contig9.20414.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=411bp
MGRYYPRPFQGAWRAWGLSLVLLLSLSATAQAFDSFSFGGGAGGGGPRFF
FNGLGSHGPQGAVDNEEYYKLLGVEKGADAAAIKRAYRRLAIKMHPDKGG
DPEQFKLLGEAYEVLSDKEKRRTYDKYGKAGLEGGTPPPSDADDLLSALF
GRAPQSGPRRARDETYQLEVSLEDLCRGRSRRVRVWKQKMEGGRAKKVPK
ELDIQIEKGMRTGSRVVMHGEVDAGASGVAPGDLVFVIKETKHPVFTRMG
AHLSAEITLTLAEALLGFVRPILLPDGRTVYYKSEEGSVVAPGDVRKLKG
CGMPVHASEKEAHESLDPHGDLYLHFHVRFPSRVQVHAWTEQDRDVLAKL
LPPKPSFAKSKGATSAGEGVDLAPAEASVAERIKEGTFGDDAREQEGPHM
PHSYFRFFGL*
back to top

mRNA from alignment at S-ischiensis_contig9:291072..298600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20414.1 ID=mRNA_S-ischiensis_contig9.20414.1|Name=mRNA_S-ischiensis_contig9.20414.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7529bp|location=Sequence derived from alignment at S-ischiensis_contig9:291072..298600- (Schizocladia ischiensis KU_0333)
GGGGGCGCACATTGCCGAGCGCTTGTGGCAGGACAGGCATGGGTAGATAT TATCCCCGTCCCTTTCAAGGGGCGTGGAGAGCGTGGGGGTTGTCCCTGGT CCTCTTGTTGTCGCTGTCGGCGACGGCACAAGCCTTCGACTCCTTTTCTT TCGGAGGTGGCGCTGGCGGCGGGGGGCCCAGGTTTTTCTTCAATGGCTTG GGCTCCCACGGCCCCCAAGGCGCTGTTGATAACGAAGAGTACTATAAGGT AAGAATATATTGGGGAGGGGGTCGCGTCCGGCTTGTGACTGCACAGGCAA GCACCTCTGGGGCACACAACCCAGCGCCGCAGCACGGCAGGCCAGCGACC AATACGTAGAACGCCGACCGTCGCGGCCCAGCTGTTCTGTCTGCCCCCCG GAGCTCCGTGCGGTGTGGATGATATTGACACGGCCTGTGTGCCCGTGCAC GCACTGCTGTAGCTGCCGAGATGCATTCGCACCCGCCAATTCACGTATGG CCGCGACGACCCTCTCGGTGCTGACCTTGAGTTCCCGTTGATGCTCCGGG GATGTCCCTGGAAAAGCTGTTGCATGGCTTTGAGTGGGATGAAACCATAG CTATCCGCAAGTTTCCCCCTGCGAACTGCCTGGCCAACACATGTACCCTA TTGACGCTGCTCACCTTGCCCGCTCGGAAGTCAACGGTTGCTTGGGATTA GAGGGGCCAGTGGCGGCGGCGAACAAGGACGTTCCAGTGGCTCTCTGGCC ACAGGGATGAAGTTTCCCCTACGCCCGAATCCTGCCTTGCTGGCTGCGTG GGCATTTGCTTGAACTTGAAGAGGCGGCAATGTGACTGCCATCCAGCAGA TGTACTGGACGCTGCCCCTCCCCCACTGGCCGCTGTCGTTTCTCAACCCG CCCTCTTTGCCCATTTTCCCTTGCCACGGGTCTCTCACTGAGCACTTGCT TGCAGTTAAGGAGGGGCCAGGTGTGGCTGCCATAAAGAGGTTGTTCCAGC TGCTGCCCCTCTCCAACTGGCCGGTAAATACAGTACAGTGTTCCATGTGT CACCCCACTCTCATTTGGGCGCTGCCCTCTCCTGGTTGTCCTCTCGTTGG ACAGTTGCTTGGTGTTGAAAAGGGCGCAGATGCGGCGGCCATCAAGAGGG CGTACCGGCGCCTGGCCATCAAGATGCACCCCGACAAGGGCGGGGATCCG GAACAGTTCAAGCTATTGGGGGAAGCCTACGAGGTGAGTTTCTTCTCTCA TTGTACAGTATAGTAGTATGTTGTATATGTACTCACGTGGTGCTTGCCGT AGTCCCGAGACCATTGACCACGTGCCTCTGTCGAGACGGAGCAGGACCCC TCCCTCCTCTGGCAGAGCCAGGGGGGAGGGGGTGGCTCTGCCAGGGGGGA GGGGGTGGCACAGTAGCGGGTGTTATTTAAAGGGCTAAGCTCGCTGCCAT GTGCAACTTTGCTTGACTACAAATCTGCACGCAATGTCCTACTTGGAAGT GTAGCTGGAAGCAGTACAATGAAATACATGCTCCAGCACTACTGTGCGAG TACTGTGCTACTCAAGCAAATTTTACTGTGGCCATACTTGGGCATATACT AACCGTACTACATACTCGTATATACACTTCGAGGTATCACGAGTTCCCGG ATACTTCGCCACCCCCGTGCACTTGCATAATTGTTTGTACTCGTACTTGC TGTGGGTCTACTCTACGACTCTGTACTCTCTTGCATACTTATAGTACCTG TACTTGCTGTGGGTAGGTAGTCTACTGTACAACTTTGTAACAATTTGTGC TGTACTCGTGCTTCCTGCGACAGGTGTTGTCAGACAAGGAGAAGCGGCGT ACATACGATAAGTACGGGAAAGCTGGCTTGGAAGGCGGCACGCCTCCCCC ATCCGACGCAGACGACCTCTTGAGCGCGCTCTTTGGACGAGCACCACAGG TGCGTACAGGGCTGTGAAAACAGTAGTAAAGTAGCTCCCACGCCGGGGGG ACGGGCCTTGCCACTTACAGTTCTTGGCAAAACAGTAGCTTGCGGTATTG TACAGTACTTCGGAAGCAGTATTGTACTTCGAAGCACCAGTAGTGTTATA TTGAATATACTCCTGCCCCGTCTCGGCAGAGGCACGCGGTCGGTGGTCTC GGGACTACGGCAAGCACTGTTAGGTGGGAGTACATATACTCTAGTATCGT ACCTGCTCCGTCTCGACGGAGGCGCGTGGTCAATGGTCTCGGGACTACGG CAAGCACAATGTGAGTCCATATAGTGTTGTACTGCTCCGTCTCGATCGGG GCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACTGTTCGGTGTGAGT ACATATAGGAGTATTGTACCCAGTGCTGTTGTAGCTGTAGAGGATGAGAG CTCAAGGTGTGCTTGCCGTAGTCCCGAGCCCACTGACCACATTGATGACT GGTAGGTCCAGTATGTGGAAGTACTTGGACGTACAATATTGCTTCTCACA ATATAAGTACAAGTTGACAGTACTTGATTCATTTAAGAAAGAACCAGAAA AGTACCTACTAGTGTAGTACTCGTAGTGCGTTCTACTTGAGCGAGTGTTC ATGTTGTGCACCTTTCAAGCCAAGCATGCTCGGAAGGCAACAAGACACGT CACTCGACTGGAGTTGACCTGACTCCGTTTCCCTTCACGCACCTTTCAAG CCAAGCATGCATGGAAGTCAACAAGGCGCGTCACTCGACTGGAGTTGACC TGACTCCGTTTCCCTCCACGCACCTTGCAAGCCAAGCATGCATGGAAGTC AACAAGACGCGTCACGCGACTGGACTTGACCCGACTCTGTTTCCAACAAG ACGCGTCACTTGAGTGGACTTCACCTGACTCTGTTTGCCACAGGACACGT CACTTGAGTGGACTTGACCTGACTTTGTTTCCCTTCACTCACCTCAGAGC GGGCCGCGTCGGGCAAGAGATGAGACCTACCAGCTGGAGGTATCGCTGGA GGACCTGTGCAGGGGTTGGCTCATTTAAGAAATAATCAGAAACGTACCTA CAGTAGTGCATTCTACTATTGAGCGAGCGTTCATGTTGTGCACCTTTCAA GCCAAGCATGCTTGGAAGGCAAGAAGACACGCCACTTTGTTTCCCTTCAC TCACCTCAGAGCGGGCCACGTCGTGCAAGAGATGAGACCTACCAGCTGGA AGTATCGCTGGAGGACCTGTGCAGGGGGCGCAGCCGGCGTGTGCGTGTGT GGAAGCAAAAGATGGAGGGGGGAAGGGCCAAGAAGGTGCCCAAGGAGCTG GACATACAGATCGAGAAGGGCATGAGGACGGTGAGGGACAGTACTAGTAT TGTCAGGCACAACAGTACTGTAGTTACTCTGCAAGCATGATAGTACAGTA CCTCCTTGACCAGCAAGCACATACCAGGCCTGTCGTGCCACGGTGGTTTT GCCCGTGACACTGTACTATACTGTACGAGTACAGTAGCTACTTCCTGAAG TACTTATGAGATGCAGTGCTATGATATGCTGTGACGCGCATGTGCGCGTG CCTGACCTGATTGTACTTCCAAGTACCTGATTGTGTGGTGTGTACTCATG TTCGGACGAGGTTTATCGCCTCTGTGCATGCCCTGGACCCGAACGATCCT CGACTTTGCGCCTTGGTACATACTGAATGTGGCGTCTGCAGGGGAGCAGG GTTGTCATGCATGGGGAGGTGGACGCGGGCGCATCGGGGGTGGCACCGGG AGACTTGGTGTTTGTGATCAAGGAGACCAAGCACCCCGTCTTCACCAGGA TGGGGGCACATCTGTCTGCAGAGATCACTCTCACTCTGGCAGAGGTGAGC GGCACCTGTATTTGGTACTTGTACTTCAAAGTACAAGTACAGTGTATGTG CAGTGTGCGTACAGTGTGTTCACACGGATGGGGGCACATCTGTCTGCATC ACTCTCACTCTTGCAGAGGTGAGCGGCACCGCGCGTGTGTATACAGTGCA GTTGTGTACAATATGCGTACAGTGTATGTGCAGTGTGTGCCGCAGCTGTC CGCAGAGATCACTCTCACTCTTGCAGAGGTGAGCGGCTCCGCGCTGGAGA ATTGGTACTTCGTACAAGTACAGTGTACGTACAGTGTGCGACAGTGTGTA TACAGCGCAGTTGTGTACAGTGTGCGTACAGTGTGTGTACAGCGTGTGTA CGGTGTGTGTACGGTGTGTACGAGGTCATGTCCTGTGCTCCATGGTCTCC GGACTACTGTACTTCGGAGTATACGGTAGTACGTAGGGCAAGCACAGCAG CGTAGTTCAAAGTACAAAGTATTGTTTGCATGTGTGTACAAGTACGAGTA TTCTGAGTAGTAGTACAAGCCCGCACCTCGCCCCGTTTTGTGCCTGTTAA CACCAGTACACTGTGAGTGCGCATGCCATGGGCAACGGTCTTGCGACTAT TGCAAGAAGTGCTTGTGTGCTGTACGACTAACCTGTTGAGCTGTGACACG ACGCCTTTCGGTTTTTGCCGGTCGGCTCCGGTTGACCAGTCAAACCGGCT CGAGCCTTGCCCGGTTCTCTGTTTTCTTCCACTTAGCATGTGCACATCTC AACGTTCGATATACTTCGAAGTAGCCGGTGGACTCGCCGGCTTCGGGCAA AACATAGCCGTTTTCATGCAAGAACTGGCGGTTAGTGTACAAACCCGCCC GAACCGAACCGGCTACGATACCGTTTAGGGCATCATTTCAACTGGCTGCC CCTGCCAGTTCACAGCTTGAGGTACTGTACTGTAGTGCTCTAACCTTGGA AATGCCGCGTGCACTGTACAATGCTTGGGAGGAACAAAAGGTACAGTACT AGTGCGCGGCACCGTAGATTGGAATGTGCTATACATATACAAAGTGTGCT ATACTGTACTGTAGGAGATACTTGCGAGTGGTCCGAAGCACTTGTAGTAC ATACGTGAAAGGATGATGATGGTGATTCGTGCGTTTTTCTCAGGTGTGTC GGAGGTGGCGCGTGTATTCCGGGAGAAGTTGTGATGTACTACACGACACT ACGCGACACTACTGTAGTAGAGTTACACTAGTAGTAGTACAGGCGAGTAC TACAGTACTACGACACTGCTACTCGTACTATACTACTCGAAGTACGTAGT ACTACACGAGTACTTCGAAGTACTACAGTACAGTCGACTGTTCACCGTAG GCCGTACTCCTCAAGAGCCAGCTGCCACCGCCCGATGGATCACACCCCCT TCCTGGCTGTTTTGCGTATTTGCTGTGCAAATTTGGTTTCATCACTCGTC CTTCGAGCTTCCCTCCCAGCAACGCTTGTTGCCACGGTGCCCAATTGATG TTGATGTGTTGATGTGCTCAGGCACTACTGGGGTTTGTGCGGCCAATTCT TCTGCCGGACGGCCGGACGGTGTACTACAAATCGGAGGAGGGAAGCGTCG TGGCTCCAGGCGACGTCCGCAAGCTCAAGGTGTGTCCTAGTACTTCGAAA TAGTGCTTGGAAGTGCTTACAGTACTGTCCTACGGTACAGTCAGTAGAGT ACTGTATCGACTCAAGTTATGCCCTACTGTAGTAGTTCTTGGAAGTGCTT GCAGTACAGTGCTACGGACAGTACAGTACTGTACTGTATTGACTCAAGTT ATACCCTACTGTAGTAGTGCTTGGAAGTGCTTACAGTGCAGTACTACGGA CAGTACAGTACTGTACTGGATTGACTCAAGGTACATGTGTCCTAGTAGTG CTTGGAAGTACTTACAGTGCCGTATACGGTACAGTACACTACACTACCCG TCCACCTCCCCCTCCTCCTCTTCTCCCCTTCCCCACACCGATTTCCCCTG GCGAGCTATAAGGAAGAGCCACTGCTGAGGTCTTTAGTGACGTGGCCTGG ACCTCGCCCTGTGTTGTTCCTGATCAGACAATAGCCTATTGTAGGGTAAT CGCTGGAGTAGAGGTAGGATGCAATACAATCACTCGTGTGGGCTGCACCT CGCTCGTATTTGTATCTGAAGAACAGTTAATGCTTTAGCACTTATTTAGT TGGGAAGTACCGTTCGCCAGTGCGAACCCGACAAGCTCTGTCAATAAGTA GTACACCACTGTACAGTACAGCAGTACAGTTTTTAGTACAGTACTCGTAC AAGACCTACTAGGTAGTAGTACGGCAGGGGCGCCTAGGATATAGTGGGCC AATGGCTCAAAACACTACACTCAGGTGTTAATATCTCGAAGTAGTTTTCA TAGAGGTAGAGCACGCCTGCATATCATCTTGGTTTGCCAGGTACAGCATG CTACTGTATATACTGTACTCGTACTCGCCCTACTACCGTAAGTAGTGATG TGGCTCCAAGTACTTCCAAGTAGTACATACTGTGATGTGGCTTGTGTTCT GCACTGCCGGTGTTCTGCACTGCCGGAGTGCTGCATCACACCACATCACA CTCACCTTTGGGTTGTCGGCCACGCCATTTGCATGAGCTGCAGTACTGTA CGAGTGCACTGCCCAGAGAGACACCCACACTCCGCTTGTGTGGAGATTTT GTACTGTAGTGCTACGTCGTCAATGGCGTGTGGTCAATGGTCTCGAGACT ACGGCAAGCACTGCTAGGTGTTAGTACATACAGACGGAACCCTTGTAAAT CATGCTTGTACAGCACTCTTACAGCAACACTCCACCAACCAATGGTACCT CAGCCCCATCCTGCCCCCACTGTATATTGCACCGTGCATACTCTGCAGGG GTGCGGCATGCCAGTCCCCGCTTCCGAGAAAGAGGCGCACTCTCACTCAC TCGCTTAACTTTTGCAAACAACTCAGCCCAGTCCTTCCCCCATTGTATTT TTGCGCTTTTCATACTCCACAGGGGTGCGGCATGCCAGTCCACGCTTCCG AGAAGGAGGCGCACGAGTCGCTGGACCCCCACGGGGACCTGTACCTGCAC TTCCACGTCAGGTTCCCCTCCAGGGTGCAGGTGATCACTAGCACTCGAGC ATAAGAACATTCGATTCTTGAATGGGACAACTACCAATCCTCCTCTTCTC CCCTTCCCCACACAAACTTCCCCTGGCGAGCTCTAAGGAAGGGCCGCTCC TGAGGTCTCTAGTGACATGGCCCGCCCCTCGCCCCGTGTTGTTCCCGTTA ATACTACTGCAATACGAGAACAATCAATCTCACACACGTGCGATTGTACC TCGTTACGATTTATATGAATCACCGCAGGTGCACGCGTGGACAGAGCAAG ATCGAGATGTTTTGGCAAAACTCTTGCCCCCGAAGCCGTCCTTTGCCAAG AGCAAGGGGGCGACCAGCGCGGGGGAGGGCGTGGACCTGGCGCCCGCGGA GGCGTCCGTGGCAGAACGGATCAAGGAGGGGACATTTGGGGATGATGCAA GGGAACAAGAGGGGCCCCACATGCCGCACTCCTACTTCCGCTTCTTTGGC CTGTGACGCGAATTATCGCGGCCGCTGTAGACGCCTGTAGGAAATCCAAT AAGAATATAACTTATGTATATTGTTCACG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:291072..298600-

>mRNA_S-ischiensis_contig9.20414.1 ID=mRNA_S-ischiensis_contig9.20414.1|Name=mRNA_S-ischiensis_contig9.20414.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2466bp|location=Sequence derived from alignment at S-ischiensis_contig9:291072..298600- (Schizocladia ischiensis KU_0333)
ATGGGTAGATATTATCCCCGTCCCTTTCAAGGGGCGTGGAGAGCGTGGGG
GTTGTCCCTGGTCCTCTTGTTGTCGCTGTCGGCGACGGCACAAGCCTTCG
ACTCCTTTTCTTTCGGAGGTGGCGCTGGCGGCGGGGGGCCCAGGTTTTTC
TTCAATGGCTTGGGCTCCCACGGCCCCCAAGGCGCTGTTGATAACGAAGA
GTACTATAAGATGGGTAGATATTATCCCCGTCCCTTTCAAGGGGCGTGGA
GAGCGTGGGGGTTGTCCCTGGTCCTCTTGTTGTCGCTGTCGGCGACGGCA
CAAGCCTTCGACTCCTTTTCTTTCGGAGGTGGCGCTGGCGGCGGGGGGCC
CAGGTTTTTCTTCAATGGCTTGGGCTCCCACGGCCCCCAAGGCGCTGTTG
ATAACGAAGAGTACTATAAGTTGCTTGGTGTTGAAAAGGGCGCAGATGCG
GCGGCCATCAAGAGGGCGTACCGGCGCCTGGCCATCAAGATGCACCCCGA
CAAGGGCGGGGATCCGGAACAGTTCAAGCTATTGGGGGAAGCCTACGAGT
TGCTTGGTGTTGAAAAGGGCGCAGATGCGGCGGCCATCAAGAGGGCGTAC
CGGCGCCTGGCCATCAAGATGCACCCCGACAAGGGCGGGGATCCGGAACA
GTTCAAGCTATTGGGGGAAGCCTACGAGGTGTTGTCAGACAAGGAGAAGC
GGCGTACATACGATAAGTACGGGAAAGCTGGCTTGGAAGGCGGCACGCCT
CCCCCATCCGACGCAGACGACCTCTTGAGCGCGCTCTTTGGACGAGCACC
ACAGGTGTTGTCAGACAAGGAGAAGCGGCGTACATACGATAAGTACGGGA
AAGCTGGCTTGGAAGGCGGCACGCCTCCCCCATCCGACGCAGACGACCTC
TTGAGCGCGCTCTTTGGACGAGCACCACAGAGCGGGCCACGTCGTGCAAG
AGATGAGACCTACCAGCTGGAAGTATCGCTGGAGGACCTGTGCAGGGGGC
GCAGCCGGCGTGTGCGTGTGTGGAAGCAAAAGATGGAGGGGGGAAGGGCC
AAGAAGGTGCCCAAGGAGCTGGACATACAGATCGAGAAGGGCATGAGGAC
GAGCGGGCCACGTCGTGCAAGAGATGAGACCTACCAGCTGGAAGTATCGC
TGGAGGACCTGTGCAGGGGGCGCAGCCGGCGTGTGCGTGTGTGGAAGCAA
AAGATGGAGGGGGGAAGGGCCAAGAAGGTGCCCAAGGAGCTGGACATACA
GATCGAGAAGGGCATGAGGACGGGGAGCAGGGTTGTCATGCATGGGGAGG
TGGACGCGGGCGCATCGGGGGTGGCACCGGGAGACTTGGTGTTTGTGATC
AAGGAGACCAAGCACCCCGTCTTCACCAGGATGGGGGCACATCTGTCTGC
AGAGATCACTCTCACTCTGGCAGAGGGGAGCAGGGTTGTCATGCATGGGG
AGGTGGACGCGGGCGCATCGGGGGTGGCACCGGGAGACTTGGTGTTTGTG
ATCAAGGAGACCAAGCACCCCGTCTTCACCAGGATGGGGGCACATCTGTC
TGCAGAGATCACTCTCACTCTGGCAGAGGCACTACTGGGGTTTGTGCGGC
CAATTCTTCTGCCGGACGGCCGGACGGTGTACTACAAATCGGAGGAGGGA
AGCGTCGTGGCTCCAGGCGACGTCCGCAAGCTCAAGGCACTACTGGGGTT
TGTGCGGCCAATTCTTCTGCCGGACGGCCGGACGGTGTACTACAAATCGG
AGGAGGGAAGCGTCGTGGCTCCAGGCGACGTCCGCAAGCTCAAGGGGTGC
GGCATGCCAGTCCACGCTTCCGAGAAGGAGGCGCACGAGTCGCTGGACCC
CCACGGGGACCTGTACCTGCACTTCCACGTCAGGTTCCCCTCCAGGGTGC
AGGGGTGCGGCATGCCAGTCCACGCTTCCGAGAAGGAGGCGCACGAGTCG
CTGGACCCCCACGGGGACCTGTACCTGCACTTCCACGTCAGGTTCCCCTC
CAGGGTGCAGGTGCACGCGTGGACAGAGCAAGATCGAGATGTTTTGGCAA
AACTCTTGCCCCCGAAGCCGTCCTTTGCCAAGAGCAAGGGGGCGACCAGC
GCGGGGGAGGGCGTGGACCTGGCGCCCGCGGAGGCGTCCGTGGCAGAACG
GATCAAGGAGGGGACATTTGGGGATGATGCAAGGGAACAAGAGGGGCCCC
ACATGCCGCACTCCTACTTCCGCTTCTTTGGCCTGTGAGTGCACGCGTGG
ACAGAGCAAGATCGAGATGTTTTGGCAAAACTCTTGCCCCCGAAGCCGTC
CTTTGCCAAGAGCAAGGGGGCGACCAGCGCGGGGGAGGGCGTGGACCTGG
CGCCCGCGGAGGCGTCCGTGGCAGAACGGATCAAGGAGGGGACATTTGGG
GATGATGCAAGGGAACAAGAGGGGCCCCACATGCCGCACTCCTACTTCCG
CTTCTTTGGCCTGTGA
back to top