mRNA_S-ischiensis_contig9.20393.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20393.1
Unique NamemRNA_S-ischiensis_contig9.20393.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.020e-23
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   25 LLKALATRAMTEAEYVCTGMLTEHQAGGQ--QGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASL 234
            LLK+LA RAM+EAEYV TG L++HQA G+  + Q ESRF H GLGL HYTHFTSPIRRYADI+VHRLLLASL
Sbjct:  891 LLKSLAVRAMSEAEYVSTGTLSDHQAHGKGLEAQEESRFGHFGLGLSHYTHFTSPIRRYADIVVHRLLLASL 962
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.770e-21
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:   25 LLKALATRAMTEAEYVCTGMLTEHQAGGQ--QGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASL 234
            LLK+LA RAM+EAEYV TG L++HQA G+  + Q  SRF H GLGL  YTHFTSPIRRYADI+VHRLLLASL
Sbjct:  485 LLKSLAVRAMSEAEYVSTGTLSDHQAHGKGLEAQEGSRFGHFGLGLSLYTHFTSPIRRYADIVVHRLLLASL 556
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A836CJZ0_9STRA (DIS3-like exonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.390e-20
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   25 LLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLAS 231
            LLK+LATR M+EA YVCTG L EH AGG  G    R +H GLG+G YTHFTSPIRRYAD++VHRLLLA+
Sbjct:  399 LLKSLATRVMSEAVYVCTGTLDEHSAGG--GVTGERLSHFGLGIGSYTHFTSPIRRYADVVVHRLLLAA 465
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A833WGM2_PHYIN (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WGM2_PHYIN)

HSP 1 Score: 85.1 bits (209), Expect = 2.310e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   22 NLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEA 240
            +LLK+LA R MTEAEYV +G +    A    G   +RFAH GLGL +YTHFTSPIRRYAD+IVHR LLAS+ A
Sbjct:  880 SLLKSLAVRVMTEAEYVSSGAVAAGDAASANGD-VTRFAHYGLGLQYYTHFTSPIRRYADVIVHRQLLASIAA 951
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: D0NJG3_PHYIT (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NJG3_PHYIT)

HSP 1 Score: 85.1 bits (209), Expect = 2.310e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   22 NLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEA 240
            +LLK+LA R MTEAEYV +G +    A    G   +RFAH GLGL +YTHFTSPIRRYAD+IVHR LLAS+ A
Sbjct: 1087 SLLKSLAVRVMTEAEYVSSGAVAAGDAASANGD-VTRFAHYGLGLQYYTHFTSPIRRYADVIVHRQLLASIAA 1158
[Close]
BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A3M6VPV9_9STRA (DIS3-like exonuclease 1 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPV9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.150e-17
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 RASTAARNLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEA 240
            R  T   +LLK+LA R MTEAEYV +G      A    G   +RFAH GLGL +YTHFTSPIRRYADIIVHR LLAS++A
Sbjct:  872 RMDTKTMSLLKSLAVRVMTEAEYVSSGETAAGDAATANGD-ITRFAHYGLGLQYYTHFTSPIRRYADIIVHRQLLASIKA 950
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A5D6XKW3_9STRA (DIS3-like exonuclease 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKW3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.150e-17
Identity = 47/77 (61.04%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   25 LLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEAHQRGG 255
            LLK+LA R M++AEYVC        A        + FAH GLGL HYTHFTSPIRRYADIIVHR LLASLE   R G
Sbjct:  885 LLKSLAVRVMSQAEYVCASDADARSAANDD---TTSFAHYGLGLQHYTHFTSPIRRYADIIVHRQLLASLEIETRSG 958
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BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: W2QZJ8_PHYPN (DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxID=4783 RepID=W2QZJ8_PHYPN)

HSP 1 Score: 84.3 bits (207), Expect = 4.300e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   22 NLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEA 240
            +LLK+LA R MTEAEYV +G +    A    G   +RFAH GLGL +YTHFTSPIRRYAD+IVHR LLAS+ A
Sbjct:  879 SLLKSLAVRVMTEAEYVSSGAVAAGDAATANGDA-TRFAHYGLGLQYYTHFTSPIRRYADVIVHRQLLASIVA 950
[Close]
BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: A0A3R7JUU4_9STRA (DIS3-like exonuclease 1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUU4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.320e-17
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   22 NLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASL 234
            +LLK+LA R MTEAEYV +G +T   A    G   +RFAH GLGL +YTHFTSPIRRYAD+IVHR LLA++
Sbjct: 1063 SLLKSLAVRVMTEAEYVSSGAVTSEGAAALNGD-VTRFAHYGLGLQYYTHFTSPIRRYADVIVHRQLLAAV 1132
[Close]
BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Match: H3HBA3_PHYRM (DIS3-like exonuclease 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBA3_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 5.850e-17
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   22 NLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGLGLGHYTHFTSPIRRYADIIVHRLLLASLEA 240
            +LLK+LA R MTEAEYV +G +    A    G   +RFAH GLGL +YTHFTSPIRRYAD+IVHR LLA++ A
Sbjct:  794 SLLKSLAVRVMTEAEYVSSGAVAAGDAAAANGD-VTRFAHYGLGLQYYTHFTSPIRRYADVIVHRQLLAAIAA 865
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN43_ECTSI1.020e-2375.00DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW4_9PHAE2.770e-2172.22DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJZ0_9STRA2.390e-2069.57DIS3-like exonuclease 1 n=1 Tax=Tribonema minus Ta... [more]
A0A833WGM2_PHYIN2.310e-1763.01DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
D0NJG3_PHYIT2.310e-1763.01DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
A0A3M6VPV9_9STRA3.150e-1761.25DIS3-like exonuclease 1 n=2 Tax=Peronospora effusa... [more]
A0A5D6XKW3_9STRA3.150e-1761.04DIS3-like exonuclease 1 n=1 Tax=Pythium brassicum ... [more]
W2QZJ8_PHYPN4.300e-1763.01DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxI... [more]
A0A3R7JUU4_9STRA4.320e-1763.38DIS3-like exonuclease 1 n=3 Tax=Phytophthora kerno... [more]
H3HBA3_PHYRM5.850e-1761.64DIS3-like exonuclease 1 n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:185476..186267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categorymitochondrion
Exons2
Model size265
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.374707-CDS-S-ischiensis_contig9:185475..1855901622817375.374707-CDS-S-ischiensis_contig9:185475..185590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 185476..185590 +
1695741065.6665764-CDS-S-ischiensis_contig9:185475..1855901695741065.6665764-CDS-S-ischiensis_contig9:185475..185590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 185476..185590 +
1622817375.388773-CDS-S-ischiensis_contig9:186118..1862671622817375.388773-CDS-S-ischiensis_contig9:186118..186267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 186119..186267 +
1695741065.6825838-CDS-S-ischiensis_contig9:186118..1862671695741065.6825838-CDS-S-ischiensis_contig9:186118..186267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 186119..186267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20393.1prot_S-ischiensis_contig9.20393.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 185476..186267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20393.1

>prot_S-ischiensis_contig9.20393.1 ID=prot_S-ischiensis_contig9.20393.1|Name=mRNA_S-ischiensis_contig9.20393.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=88bp
RASTAARNLLKALATRAMTEAEYVCTGMLTEHQAGGQQGQGESRFAHTGL
GLGHYTHFTSPIRRYADIIVHRLLLASLEAHQRGGGGG
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mRNA from alignment at S-ischiensis_contig9:185476..186267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20393.1 ID=mRNA_S-ischiensis_contig9.20393.1|Name=mRNA_S-ischiensis_contig9.20393.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig9:185476..186267+ (Schizocladia ischiensis KU_0333)
AGGGCGAGCACAGCGGCGAGGAATCTCCTCAAGGCTCTGGCGACGCGGGC
CATGACGGAGGCGGAGTATGTGTGCACGGGGATGCTGACGGAGCACCAGG
CGGGCGGGCAGCAGGGTGAGGCAATACTCGCTTGTGTGTGTGTGTATGTG
TGTGTGTGCGCGCACGCGTGCATGCTTGCGTGCGTGTGTGTATGTGTGTA
TGTGTGTGCATGTGTGCATATGTGTCTGTGTGTGTGTGTGTGTGTGTGTG
CGCGCGCGTGTGTGTGCGGTGTGTGTAGAGCTCTGTATATGTGTGCGTAT
GTGTGTGCGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGC
GCGTGTGTGTATGCATGCGTGTGGGTGTGGGTGCGGGGTGCCAGCCGGCC
TGCCTGCCTGCCTTGTCCACCCGCCTCTTGGCACGCACTCACCTCTCGCC
CCCGCCTGCCTGCCTGCCTGCATGCATGCCTGCCTGCCTGTCTGCCTTTG
TGGGGCGCTTGCTGTGGTAACCCGCACTGTCCTTTTCGAATTATTGTGAT
GGTATGCAAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCAC
CAGAAGCCCTTCTTGTCTATAACCCGCACTGTCCTACTTCCAGGTCAAGG
CGAGAGCCGCTTCGCCCACACGGGCCTGGGCTTGGGGCACTACACGCACT
TCACCAGCCCCATCCGCCGATACGCCGACATCATAGTGCACCGCCTGCTG
CTGGCCTCCCTTGAAGCACACCAGCGCGGTGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:185476..186267+

>mRNA_S-ischiensis_contig9.20393.1 ID=mRNA_S-ischiensis_contig9.20393.1|Name=mRNA_S-ischiensis_contig9.20393.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=528bp|location=Sequence derived from alignment at S-ischiensis_contig9:185476..186267+ (Schizocladia ischiensis KU_0333)
AGGGCGAGCACAGCGGCGAGGAATCTCCTCAAGGCTCTGGCGACGCGGGC
CATGACGGAGGCGGAGTATGTGTGCACGGGGATGCTGACGGAGCACCAGG
CGGGCGGGCAGCAGGAGGGCGAGCACAGCGGCGAGGAATCTCCTCAAGGC
TCTGGCGACGCGGGCCATGACGGAGGCGGAGTATGTGTGCACGGGGATGC
TGACGGAGCACCAGGCGGGCGGGCAGCAGGGTCAAGGCGAGAGCCGCTTC
GCCCACACGGGCCTGGGCTTGGGGCACTACACGCACTTCACCAGCCCCAT
CCGCCGATACGCCGACATCATAGTGCACCGCCTGCTGCTGGCCTCCCTTG
AAGCACACCAGCGCGGTGGCGGCGGCGGCGTCAAGGCGAGAGCCGCTTCG
CCCACACGGGCCTGGGCTTGGGGCACTACACGCACTTCACCAGCCCCATC
CGCCGATACGCCGACATCATAGTGCACCGCCTGCTGCTGGCCTCCCTTGA
AGCACACCAGCGCGGTGGCGGCGGCGGC
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