mRNA_S-ischiensis_contig89.20353.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20353.1
Unique NamemRNA_S-ischiensis_contig89.20353.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig89.20353.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.710e-10
Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 1 
Query:  220 VSSCDDL--AALDLSGR-VTALVTTESLTCESFTQLNVADTLVLESDYGVTFSNVHLNVMSGGKLVVKVDSVFTGIDDEDVDGGVLNVAEGGKAYFQAPVLMRDNEIRTVADLGDFSSDLNFGAAIYNLGHVKFE-----ELARFMTNDNVGGGESRPGEGGGIYNGRAG 705
            ++SC DL  AA  LSG  + A +    + C+ +T + V    +     G TF++    V +G  L   V  V TG   + V+GG+LNVA+GGKA F   V M D  + +V++       +  G  +YN G ++FE     +  + +++D        PG+GGG++NG  G
Sbjct:   27 IASCADLLTAADALSGGDIEANIMEADIACDEWTTVEVGQNKLKFVGSGATFTSARFVVAAGAVLRADVPLVLTGDQTQAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSE-----EAMVHGGCVYNEGLIRFEGTFSADGCKTVSSDTA---SVIPGDGGGLWNGPGG 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU56_ECTSI3.710e-1031.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:210697..213883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1366
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20353.1prot_S-ischiensis_contig89.20353.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 211157..213522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.0703413-UTR-S-ischiensis_contig89:210696..2111561622817361.0703413-UTR-S-ischiensis_contig89:210696..211156Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 210697..211156 -
1695741056.296468-UTR-S-ischiensis_contig89:210696..2111561695741056.296468-UTR-S-ischiensis_contig89:210696..211156Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 210697..211156 -
1622817361.1171167-UTR-S-ischiensis_contig89:213522..2135731622817361.1171167-UTR-S-ischiensis_contig89:213522..213573Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 213523..213573 -
1695741056.3563278-UTR-S-ischiensis_contig89:213522..2135731695741056.3563278-UTR-S-ischiensis_contig89:213522..213573Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 213523..213573 -
1622817361.1284666-UTR-S-ischiensis_contig89:213778..2138831622817361.1284666-UTR-S-ischiensis_contig89:213778..213883Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 213779..213883 -
1695741056.3653088-UTR-S-ischiensis_contig89:213778..2138831695741056.3653088-UTR-S-ischiensis_contig89:213778..213883Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 213779..213883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.0827246-CDS-S-ischiensis_contig89:211156..2114651622817361.0827246-CDS-S-ischiensis_contig89:211156..211465Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 211157..211465 -
1695741056.30542-CDS-S-ischiensis_contig89:211156..2114651695741056.30542-CDS-S-ischiensis_contig89:211156..211465Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 211157..211465 -
1622817361.094502-CDS-S-ischiensis_contig89:212206..2123561622817361.094502-CDS-S-ischiensis_contig89:212206..212356Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 212207..212356 -
1695741056.3188403-CDS-S-ischiensis_contig89:212206..2123561695741056.3188403-CDS-S-ischiensis_contig89:212206..212356Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 212207..212356 -
1622817361.106115-CDS-S-ischiensis_contig89:213231..2135221622817361.106115-CDS-S-ischiensis_contig89:213231..213522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 213232..213522 -
1695741056.340066-CDS-S-ischiensis_contig89:213231..2135221695741056.340066-CDS-S-ischiensis_contig89:213231..213522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 213232..213522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20353.1

>prot_S-ischiensis_contig89.20353.1 ID=prot_S-ischiensis_contig89.20353.1|Name=mRNA_S-ischiensis_contig89.20353.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=250bp
MKFGIASVVGLLLPAGLRAASVSSCDDLAALDLSGRVTALVTTESLTCES
FTQLNVADTLVLESDYGVTFSNVHLNVMSGGKLVVKVDSVFTGIDDEDVD
GGVLNVAEGGKAYFQAPVLMRDNEIRTVADLGDFSSDLNFGAAIYNLGHV
KFEELARFMTNDNVGGGESRPGEGGGIYNGRAGPRCASTPISSWSRTRPT
CVRAYTAFFFCSLFLYLLFLFLISFGFHVFSPGSRRHSCVCVYTYVFLS*
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mRNA from alignment at S-ischiensis_contig89:210697..213883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20353.1 ID=mRNA_S-ischiensis_contig89.20353.1|Name=mRNA_S-ischiensis_contig89.20353.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3187bp|location=Sequence derived from alignment at S-ischiensis_contig89:210697..213883- (Schizocladia ischiensis KU_0333)
CCTCGAGGGCTGAACGACAGCCGCACTGCGCAGTCTGTGCCAGCAGGAAG
AGGGCCAACGGGTGCGTAGGCAGAGCGCGCACGGCAACAGCCCCGCTTCC
ATCAGGTGATCCCTCCTGCGCTCGAGTTTGGCCCGTTCGTGTTGGACACG
GCCTGTGATTGCGGCACAATGGCCGGGAGCCGTTCGGGCCCAGTACCACA
CCTGCAGGACCAACAAATAGCCTCCTCTTGGGCCCACGTTTGCCACCGCC
CCGCCGTCTCGATCCTCCCGCCCTGCTGGCCCGTGCCCTCTGCAATATTC
GCACTCCCAGGCTACGCGCGGCATATTCGTCGCCAAAGCGACTCCAGAAG
ACAGCGCGAGTATGAAGTTCGGCATCGCAAGCGTGGTGGGCCTGCTCCTG
CCCGCCGGGCTCCGCGCGGCCTCGGTTTCCTCCTGCGATGATCTGGCTGC
GCTGGACCTCTCGGGCCGTGTGACTGCCTTGGTGACCACGGAGAGCTTGA
CCTGCGAGAGTTTCACGCAATTGAACGTGGCCGACACGCTCGTCCTCGAG
AGCGACTACGGGGTCACCTTCTCCAACGTGCACTTAAACGTCATGTCCGG
GGGCAAGCTTGTCGTGAAGGTTGACTCCGTGTTCACGGGCATCGACGACG
AGGTGGGTTGGCGAGGCGCGGAGTGCTTGGCATGTTGCGTGTGGCTACCT
GGTCTTTGCCTGCACCCGTGTGGCAGGAGGAATGCTGTTCGGCCGTGGAT
GCGCTTTTCGCAACCCAAGGCCTGGCTGCTGTCGGCCATGGACTCGTACG
GCCGCTCTGGCACGCGATAGTTTTCTACCCTCCACCCCCACAGAGCTTCT
CTTGGCTGTGTGATTGTTGGTTGGTTCCATCTGCCCCTGCCGCCACCACG
TGGGGAGGACGTAGACCGTGGCGCAACCCTTTCTTACCGCCTCAGGAAGG
CAGCTGAATGTACCGATGATATCGCAATTGCCTTGAGGGTTGAGGGAGGC
ACAAAGGTGGGGCCAGTTCTGAAGTTGTCCCAACCTCGCTTAAAATAGGT
TGCACGATGCGGCATTGTAATACCCCATGATTTATCAACAGTCAGGCCAT
TTCAGTGGATTGATTGATTCAAAAGCGTTTGCGAGGTACAGTAGTTACAA
ACAATCTCACCTGTGTGAATGAATTGACGCGAGTGTGCTCTCTGGGATTG
AGTGGGTAAGCAAGTATGTACTGCTGAAGTGCACCAGCAGCAGTTGATGC
CGATTGATTTGATCATGTGAATGTACTTGGACGGATCAGCGATTTTTTAG
TGGAAGAAGCCCTCGGTTCCCGGGCACAAACGCACTACATAGTCTTGTAA
GCGAGGCAAGAAAGAAAGAAAATAAACTCACGTGTGCGGGGTGAAATTGA
CTCCAATTGGGTGTGCCCGTGGCGATGTTTGATTTCCGGGCCCCGTCCCC
CAACTGCACTCGTCTTGTGTAGTACATGGGTACTCGCATCAGTCCCACAC
TGAGCTTCCCTCTGCGCACTCGAGCAGGACGTCGACGGCGGGGTCCTGAA
CGTGGCCGAGGGCGGCAAGGCATACTTCCAGGCCCCCGTCTTGATGAGGG
ACAATGAGATCCGGACCGTGGCCGACCTCGGCGACTTCTCCAGCGACCTG
AACTTTGGAGCCGCCATCTACAACTTGGTGAGATTGCTACTGTTATTTTT
TGTTGTTCTTGTTAATATGCTATTATTGCTACTACTATTTTTATTGTATC
GTTAATATTAATAGTCAATGGTATCGGGACTACGGCAAGCACCACGTGAG
TGCATATATTGTTACTATTACTGTTATGATCATTATTCGGCCTGCCTCTG
CCCGCCTGCCCGTTTTCGCTCAATTCATTTTTGTGCCCGCCCCAGCCGTG
GCTCCCTTCTAAGTACGGGGGTGGCAAGGGCGGCTCTTGCGTGGAGGCCG
TGACCGCCGCCCACAAGTGCACCCGCCACCCGCAAGGAAAGGAGCATCTC
TTCTCTCTGCCCTGTCTCCCTTTTATCCCCCCCCCCTCCCTCCCTCCCCC
TCTCTCGCCCACCATGCCCACCCCCCCCTTCTCCCCCCCCCTCCCTCCCT
GCCCTCCCCACTTCCCGCCCCCTCCTCCTCCCCGGACCCTCCTGCCCCAT
TCCCTCGCCCCCCCCCCCCTTCGGCTCACCCTCCCCGCACCCCCCGCCCG
CCTTCCCCCTTCGATCCTTCCCGCCATCCCTCCCCTGTTCTCGGGGCATT
CGAATGGTTGGGGCTGTGGCGTGCATGCAATAGTCGACGTGATGTGTGCG
GCACTCTGCTGCACTCACTGCACTGTAGTTTGACATCAGTTCACACCAAA
TTACACCACATCGCATCACGTCTGGCGAACCCACACCTCCCTCCCCACAC
ACCTCCCCCCATGCCCAGGGCCACGTCAAGTTTGAGGAACTCGCGAGGTT
CATGACCAACGACAACGTCGGCGGGGGCGAGTCCAGGCCTGGAGAGGGCG
GCGGCATCTACAACGGGCGCGCGGGGCCACGATGTGCTTCGACGCCGATC
TCGTCATGGTCGAGAACACGGCCGACGTGCGTTCGTGCATACACTGCCTT
CTTCTTTTGTTCCTTATTTCTTTACCTTCTTTTTTTGTTCCTTATTTCTT
TTGGTTTTCACGTATTTTCACCAGGCTCGCGTCGTCATTCTTGTGTGTGT
GTGTATACCTATGTGTTCTTGTCGTGACGGGGAAACACGGCCGATGTGCG
TGGAAGACATGCGCTTGTGTTGACCACTCACACCTAAGGCTGTGTGAGTG
TGTGCGTGCTCGTGCGTATGTACCTAGTGAGTGTACGCCTGCATGCGTGC
GCATGTGCTTGCTACCCTGCTTGTCCACTCATTGCATCAGCGCGCTCCTT
TGTGTATTGGCGTGCATGCGCGCGCTCTCCAAGGGGTACAACTCCTACGT
GTACACAGCGCCATATTTGTTGGAGAGCTAAAGATGTTGCCCCCCCCCCG
GGGACAATCTTGGGGAGAGTAATTCTCCGCCCGGGGGTACTCGTACAACA
ATGGCCCCAAATGAATCATCCCGGAATCCCTCCAAGGATTCCTCCAGGTC
CAGGGAGATTTTATTTTCTACGATTTTTCCGACGCGAAAGCGTCCAGTAT
TCGGCTAGAAACGCCTCCCCGGAAAGTGGCACGGGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:210697..213883-

>mRNA_S-ischiensis_contig89.20353.1 ID=mRNA_S-ischiensis_contig89.20353.1|Name=mRNA_S-ischiensis_contig89.20353.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig89:210697..213883- (Schizocladia ischiensis KU_0333)
ATGAAGTTCGGCATCGCAAGCGTGGTGGGCCTGCTCCTGCCCGCCGGGCT
CCGCGCGGCCTCGGTTTCCTCCTGCGATGATCTGGCTGCGCTGGACCTCT
CGGGCCGTGTGACTGCCTTGGTGACCACGGAGAGCTTGACCTGCGAGAGT
TTCACGCAATTGAACGTGGCCGACACGCTCGTCCTCGAGAGCGACTACGG
GGTCACCTTCTCCAACGTGCACTTAAACGTCATGTCCGGGGGCAAGCTTG
TCGTGAAGGTTGACTCCGTGTTCACGGGCATCGACGACGAGATGAAGTTC
GGCATCGCAAGCGTGGTGGGCCTGCTCCTGCCCGCCGGGCTCCGCGCGGC
CTCGGTTTCCTCCTGCGATGATCTGGCTGCGCTGGACCTCTCGGGCCGTG
TGACTGCCTTGGTGACCACGGAGAGCTTGACCTGCGAGAGTTTCACGCAA
TTGAACGTGGCCGACACGCTCGTCCTCGAGAGCGACTACGGGGTCACCTT
CTCCAACGTGCACTTAAACGTCATGTCCGGGGGCAAGCTTGTCGTGAAGG
TTGACTCCGTGTTCACGGGCATCGACGACGAGGACGTCGACGGCGGGGTC
CTGAACGTGGCCGAGGGCGGCAAGGCATACTTCCAGGCCCCCGTCTTGAT
GAGGGACAATGAGATCCGGACCGTGGCCGACCTCGGCGACTTCTCCAGCG
ACCTGAACTTTGGAGCCGCCATCTACAACTTGGACGTCGACGGCGGGGTC
CTGAACGTGGCCGAGGGCGGCAAGGCATACTTCCAGGCCCCCGTCTTGAT
GAGGGACAATGAGATCCGGACCGTGGCCGACCTCGGCGACTTCTCCAGCG
ACCTGAACTTTGGAGCCGCCATCTACAACTTGGGCCACGTCAAGTTTGAG
GAACTCGCGAGGTTCATGACCAACGACAACGTCGGCGGGGGCGAGTCCAG
GCCTGGAGAGGGCGGCGGCATCTACAACGGGCGCGCGGGGCCACGATGTG
CTTCGACGCCGATCTCGTCATGGTCGAGAACACGGCCGACGTGCGTTCGT
GCATACACTGCCTTCTTCTTTTGTTCCTTATTTCTTTACCTTCTTTTTTT
GTTCCTTATTTCTTTTGGTTTTCACGTATTTTCACCAGGCTCGCGTCGTC
ATTCTTGTGTGTGTGTGTATACCTATGTGTTCTTGTCGTGAGGCCACGTC
AAGTTTGAGGAACTCGCGAGGTTCATGACCAACGACAACGTCGGCGGGGG
CGAGTCCAGGCCTGGAGAGGGCGGCGGCATCTACAACGGGCGCGCGGGGC
CACGATGTGCTTCGACGCCGATCTCGTCATGGTCGAGAACACGGCCGACG
TGCGTTCGTGCATACACTGCCTTCTTCTTTTGTTCCTTATTTCTTTACCT
TCTTTTTTTGTTCCTTATTTCTTTTGGTTTTCACGTATTTTCACCAGGCT
CGCGTCGTCATTCTTGTGTGTGTGTGTATACCTATGTGTTCTTGTCGTGA
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