prot_S-ischiensis_contig89.20353.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig89.20353.1
Unique Nameprot_S-ischiensis_contig89.20353.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length250
Homology
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BLAST of mRNA_S-ischiensis_contig89.20353.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.790e-11
Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 0 
Query:   22 VSSCDDL--AALDLSGR-VTALVTTESLTCESFTQLNVADTLVLESDYGVTFSNVHLNVMSGGKLVVKVDSVFTGIDDEDVDGGVLNVAEGGKAYFQAPVLMRDNEIRTVADLGDFSSDLNFGAAIYNLGHVKFE-----ELARFMTNDNVGGGESRPGEGGGIYNGRAG 183
            ++SC DL  AA  LSG  + A +    + C+ +T + V    +     G TF++    V +G  L   V  V TG   + V+GG+LNVA+GGKA F   V M D  + +V++       +  G  +YN G ++FE     +  + +++D        PG+GGG++NG  G
Sbjct:   27 IASCADLLTAADALSGGDIEANIMEADIACDEWTTVEVGQNKLKFVGSGATFTSARFVVAAGAVLRADVPLVLTGDQTQAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSE-----EAMVHGGCVYNEGLIRFEGTFSADGCKTVSSDTA---SVIPGDGGGLWNGPGG 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU56_ECTSI4.790e-1131.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..227
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..204
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.788
NoneNo IPR availableTMHMMTMhelixcoord: 205..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:211157..213522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20353.1mRNA_S-ischiensis_contig89.20353.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig89 210697..213883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig89.20353.1 ID=prot_S-ischiensis_contig89.20353.1|Name=mRNA_S-ischiensis_contig89.20353.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=250bp
MKFGIASVVGLLLPAGLRAASVSSCDDLAALDLSGRVTALVTTESLTCES
FTQLNVADTLVLESDYGVTFSNVHLNVMSGGKLVVKVDSVFTGIDDEDVD
GGVLNVAEGGKAYFQAPVLMRDNEIRTVADLGDFSSDLNFGAAIYNLGHV
KFEELARFMTNDNVGGGESRPGEGGGIYNGRAGPRCASTPISSWSRTRPT
CVRAYTAFFFCSLFLYLLFLFLISFGFHVFSPGSRRHSCVCVYTYVFLS*
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