mRNA_S-ischiensis_contig88.20308.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20308.1
Unique NamemRNA_S-ischiensis_contig88.20308.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig88.20308.1 vs. uniprot
Match: D7G4S5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.290e-11
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 2 
Query:    8 MPLEDFIREVNRDDYDESVAKDMPRYPGAALAFHVYYKNIQVMSTLAVGAATAMWLKRG--RAERLVLGMMPRYA 226
            MPL D  +  +   YDESVAKDMP YPG AL  HV  KN+Q+ ST+   A+  +WL         LVL   PR+A
Sbjct:    1 MPLADLNKRADLSKYDESVAKDMPEYPGLALTSHVLLKNVQLWSTVGSVASLGVWLNSPDRSVSSLVLKQWPRFA 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S5_ECTSI4.290e-1146.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:278484..281223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1757
Ec32 orthologEc-20_000560.1
Exons3
Model size233
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20308.1prot_S-ischiensis_contig88.20308.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 278491..281223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.468489-UTR-S-ischiensis_contig88:278483..2784901622817357.468489-UTR-S-ischiensis_contig88:278483..278490Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 278484..278490 +
1695741053.5176148-UTR-S-ischiensis_contig88:278483..2784901695741053.5176148-UTR-S-ischiensis_contig88:278483..278490Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 278484..278490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.4813564-CDS-S-ischiensis_contig88:278490..2786131622817357.4813564-CDS-S-ischiensis_contig88:278490..278613Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 278491..278613 +
1695741053.5279093-CDS-S-ischiensis_contig88:278490..2786131695741053.5279093-CDS-S-ischiensis_contig88:278490..278613Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 278491..278613 +
1622817357.4934802-CDS-S-ischiensis_contig88:279963..2800191622817357.4934802-CDS-S-ischiensis_contig88:279963..280019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 279964..280019 +
1695741053.537358-CDS-S-ischiensis_contig88:279963..2800191695741053.537358-CDS-S-ischiensis_contig88:279963..280019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 279964..280019 +
1622817357.5047898-CDS-S-ischiensis_contig88:281177..2812231622817357.5047898-CDS-S-ischiensis_contig88:281177..281223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 281178..281223 +
1695741053.5462677-CDS-S-ischiensis_contig88:281177..2812231695741053.5462677-CDS-S-ischiensis_contig88:281177..281223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 281178..281223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20308.1

>prot_S-ischiensis_contig88.20308.1 ID=prot_S-ischiensis_contig88.20308.1|Name=mRNA_S-ischiensis_contig88.20308.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=75bp
MPLEDFIREVNRDDYDESVAKDMPRYPGAALAFHVYYKNIQVMSTLAVGA
ATAMWLKRGRAERLVLGMMPRYARR
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mRNA from alignment at S-ischiensis_contig88:278484..281223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20308.1 ID=mRNA_S-ischiensis_contig88.20308.1|Name=mRNA_S-ischiensis_contig88.20308.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2740bp|location=Sequence derived from alignment at S-ischiensis_contig88:278484..281223+ (Schizocladia ischiensis KU_0333)
GACGAGCATGCCTCTCGAGGACTTCATCCGCGAGGTCAACCGCGACGACT
ACGATGAGTCCGTGGCCAAAGACATGCCGCGGTACCCTGGGGCGGCTCTG
GCGTTTCACGTCTATTACAAAAACATCCAGGTGAGAGGGTCTTCCCCCTC
ACATATGTACACACGCAGTGAAGGCGAAAACGTATTGCAACCGTCGTTAT
GCCGAAACAGCAGTGAAACCGGTCTTGACGGCCTTTCATCTCTGGCTGAA
CATGGTTCAGGCGTGGAGTGGTCAGCCAACGAGGCCAATAATGGGCGTGT
CTTCATGTTGCCATGCCCCAAACGTGCACTGCCCATGTCACTGTGGCCTC
TCAGTTCCACGCGCGTGCGTGTGTGTGCGCGCACGTTTTCCTGGGGGCCG
ACACGGTTAACCCTTTTACCCCTGGTCAACTGGACTTACGCAGTAAAACC
CTATGATTATACGGACCCCAGGGGTAAAAGGGTCAACGCTCGGAAGACTG
CTGCATGCATGTTCAGCCCATGCTACGCTACAGTACTGCCGTTTGGTCTA
CCACAGGTCTCCACGGGCTAGCGTTTGTTCGGCGCCGTGAACGGATCGGC
TGGCCGGACAGGTAGCCACACGCCTGCCCAGCGCAGTTGCTGTACGTCAG
TTAAGAGAGGTCCTGACCATAGCCACTATCCCCGGTAGCAGAGGAACGAA
TGATGGGCTCTCCCACGGGGTCTGCCTATCTTGCGCCTGGTCGATTGTCG
CATGGCTAAGGGTAGGTTCGAGTGATCAGGTCCTCTGGCATCAGCTTGGC
TAGTTCACGTTGGTTGAGGTGTGACGAGAGCACCAAGTGAGAAGCGGGCG
CCCTCTGTGTGAGAGAGAGTGGGTCAAGAAGCAGCTCTCGAACACAAAGT
ACGTCTGGAACATGCCGACCGGAGGCGGCATTGGCCTCGGGTTTCCTCGT
AGGGGCCGAGGCGTTGGCCCAGCCTCTGGACGGTAACGGCAATGATCACC
CGATCATCACACTTACGATAAAGACAGGACGAAAGGGGGACCCCGCACCC
CACCGTCCTCCGGCCGAAGCTGACCTCTACTACCCCCCGTGCCCCCCCCC
CCTGCGGAAAACGCCTGCGCATGGCCATGGTTGCTGCACCGGTGACACGC
CTCACCGTTTCGGTTGTTTGGGAACGCCTGGCCTGGTCCACCGGGGAATG
GCGCTGGCAATGGACGCCTGATCATGGACATGGTTTGGGGAAACGCCTGG
TCCCGGTGGCGGTGCCGTGGACGCCTGTGCGCTGGCGATGGATGCCTGAT
CATGGTCATGGTTCTGGGAAACGCCTGGTCATGGTGGTGGCGGTGCGGTG
AACGCCTGTGTGCCTGGTCCCCCCCTGGGGGGGATTGGCGCTGGTGATGG
ACGCCTGATCATGGTCGTGGTTGGGAAACGCCTGGTCACCGTGGCGGTGC
GGTGGACGCCTGTGTGCAATGTACGAGTAGGTGATGAGCACGTTGGCTGT
CGGGGCAGCCACCGCCATGTGGCTGAAGCGGGGAAGGTGAGACCTTAAGT
TGGCCCTTTGATACGAGGGCAAACTCATTCCTAGCTGAACCCCTAGGTAT
AGTTTGAGCGCACAAGTACTTGACGAGACACAAGATCACTACAGTAATCG
TCAGAGAGATTTTGCCCCCACGGGACAACTTACGGGGGAATATTTCTGGC
CGAGAAGGTCCAGAATTGTCCCGAAATCTCTCCGAAAAGTTCCCCCAGGT
CCTGACGGAGATTTTCCGAGTTTTCCTGCGCGAATCCGACCAGTATTCGG
CGAGAAAACTTCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTGCGGC
GATTACGGTACTTCGAGTAGTAGATATATGGTTTGAGAGCACTAGGAGAT
ATAGTGCAAAAGCACCAAGTACCACTGTCATGTGGCTGAAGCGGGGAAGG
TGAGAGCTCAGCCCTGTGTGCCGAGGGCAAACTAGTTCTGTCTAAGGTAT
AGTTTGAGCGCACGCCCCCCCCCCCCAAGTTAACCCTTGAAGGACGCTGG
TACTTGAGACAAAAGAGCACTACAGTGGTCGGTATATTGCACATCTCCCG
ACAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCATAGTCTTCTTCCTA
CGGTATTCCTATCCCTCACCATCCTGACCCGTGTCCTCCTCCTTCTTCTT
TCACTCTTTCCTTCCTATCCTTGCCATCATCTTCTTCGTCTTGTTCTTCT
TGTTTGGTGGTGCTGCAATAGCTGTCGGGGAAATAGTTGGGGTTTGTGAC
ATTCTGATCCTGTGCTGACAATGGCAGACATAGCAGAAATGCCTAACGCG
CAATGAGGGGAGCTAGAGATATCTCCTAGGGTGAGAGTGCTACAAGGGGT
TGTACGTAGTCTTGTATAGGGGACCAGAGGCCGTGTGTGTCGTTTTAAAC
ATCATGGATACAGATGTTCTGACACTTACTTCCTTTTTTTTTCAACCAGA
CAAACAAGTGAGTGGGCAAGAAGAGGTGTCCCCACTTACGTGGGTTCAGG
GCCCCACCCCCGGAAGCCCTTCTTTTCACTCGCCTTCACTCGCAGGGCAT
ATAGAGCAGAAGAATAAATACAAACTCCCTTTGTTCTTGCCCAGGGCGGA
GCGTCTGGTTCTGGGGATGATGCCCCGGTACGCGCGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:278484..281223+

>mRNA_S-ischiensis_contig88.20308.1 ID=mRNA_S-ischiensis_contig88.20308.1|Name=mRNA_S-ischiensis_contig88.20308.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig88:278484..281223+ (Schizocladia ischiensis KU_0333)
ATGCCTCTCGAGGACTTCATCCGCGAGGTCAACCGCGACGACTACGATGA
GTCCGTGGCCAAAGACATGCCGCGGTACCCTGGGGCGGCTCTGGCGTTTC
ACGTCTATTACAAAAACATCCAGATGCCTCTCGAGGACTTCATCCGCGAG
GTCAACCGCGACGACTACGATGAGTCCGTGGCCAAAGACATGCCGCGGTA
CCCTGGGGCGGCTCTGGCGTTTCACGTCTATTACAAAAACATCCAGGTGA
TGAGCACGTTGGCTGTCGGGGCAGCCACCGCCATGTGGCTGAAGCGGGGA
AGGTGATGAGCACGTTGGCTGTCGGGGCAGCCACCGCCATGTGGCTGAAG
CGGGGAAGGGCGGAGCGTCTGGTTCTGGGGATGATGCCCCGGTACGCGCG
GCGGGGCGGAGCGTCTGGTTCTGGGGATGATGCCCCGGTACGCGCGGCGG
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