mRNA_S-ischiensis_contig87.20284.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20284.1
Unique NamemRNA_S-ischiensis_contig87.20284.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 7.360e-57
Identity = 115/200 (57.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query:  439 CSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVN-AGTGRNEGGGVEVAGLRMAGPGAAKA-IQEGADEKRKTYACLVWTSRPTMPADMQALNVTD----LVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
            C    L GAGRED DVRMLG GRPF LEL DS  S+ ++AA+L  L  AVN AG  +N GGGV V+ L+++GPG   + +Q   + KRK Y C+VW SRP    ++      D    LVVQQ TP+RVLHRRTLL RP+++  M AEWIN H+  L L TSAG Y+KEFVHGD GRTVPS+GSLL C ADILQLDV  VE
Sbjct:  383 CVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 582          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.190e-56
Identity = 117/202 (57.92%), Postives = 138/202 (68.32%), Query Frame = 1
Query:  430 VCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQA-LNV----TDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
            + +C   KL GAGRED DVRMLG+GRPFVLE+ DSK +  QLA  L RL + VNA TG N  G VEV+  ++ G      IQEGA+ KRK Y C+VWTSR    A++ A L+      DL V+Q TPVRVLHRR  LTR KT+ A+ A  +   +  L LTTSAG YVKEFVHGD GRTVPSVG+LL C ADILQLDV GV+
Sbjct:  471 LARCREVKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGLNSEGAVEVSDFKLVGRDIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAGTYVKEFVHGDLGRTVPSVGALLGCRADILQLDVVGVD 672          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 2.220e-56
Identity = 117/200 (58.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query:  439 CSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVN-AGTGRNEGGGVEVAGLRMAGPGAAKA-IQEGADEKRKTYACLVWTSRPTMPADMQALNVTD----LVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
            C    L GAGRED DVRMLG GRPF LEL DS  S+ ++AA+L  L  AVN AG  +N GGGV V+ LR+AGPG   + +Q   + KRK Y C+VW SRP    ++      D    LVVQQ TP+RVLHRRTLL RP+++  M AEWIN H+  L L TSAG Y+KEFVHGD GRTVPS+GSLL C ADILQLDV  VE
Sbjct:  589 CVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 788          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A1V9Z0V9_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0V9_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.370e-51
Identity = 110/197 (55.84%), Postives = 127/197 (64.47%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSL--PQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            P  +    K   AGRED DVRMLG+GRPF+LEL D+K +   P+  A ++    A N          VEV  L  A      A+Q GAD KRKTY C+VWTS    PA +  LN + DL V QKTPVRVLHRRTLLTRPK +H    E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V SLL C+ADILQLDV
Sbjct:  281 PEFRAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLSPEAFATVQNRVNAANLDV-------VEVRELTGATKEGFAALQSGADSKRKTYCCVVWTSGVLTPARVATLNGIVDLKVAQKTPVRVLHRRTLLTRPKVIHDARVEVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTFPNVASLLGCDADILQLDV 470          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A8K1C5Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Y9_PYTOL)

HSP 1 Score: 191 bits (486), Expect = 5.990e-51
Identity = 105/197 (53.30%), Postives = 134/197 (68.02%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSR---PTMPADMQALNVTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            P  + SG K   AGRED DVRMLG+GRPF+LE+ D+K S     A+ E+L  AVN        G VE+  ++ +       +Q GAD KRKTY C+VW+ +   P + A + A++  DL +QQ+TP+RVLHRRTL+TRPK +HA   E +N HY+ LRLTTSAG YVKEFVHGD GRTVP+V ++L C ADILQLDV
Sbjct:  316 PFFKGSGYKFHTAGREDVDVRMLGNGRPFILEILDAKKS-KLTPAEYEQLQAAVNT----THQGAVEIREVKASTKEYFGKLQAGADSKRKTYCCVVWSEKELTPDLVAKLDAIH--DLTIQQQTPIRVLHRRTLMTRPKVIHATKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTVPNVSTILECEADILQLDV 505          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A3R7CT38_9STRA (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CT38_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.500e-50
Identity = 99/187 (52.94%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  451 KLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            K   AGRED DVRMLG+GRPF+LEL   +       A + R  + VN          VE+ G ++        +Q GAD KRKTY C+VW +    P  +  LN ++DL V QKTPVRVLHRRTLLTRPK +H+     +N HY+ LRLTTSAG YVKEFVHGD GRT+P+V +LL C+ADILQLDV
Sbjct:   51 KFHTAGREDVDVRMLGNGRPFILELIGGR-------APVARALRKVN----ETNADRVEIRGFQLTDKKRFSVLQAGADSKRKTYCCVVWVAEKLTPDRVATLNSISDLAVAQKTPVRVLHRRTLLTRPKVIHSANVTVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTLPNVSTLLGCDADILQLDV 226          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC)

HSP 1 Score: 190 bits (482), Expect = 1.550e-50
Identity = 110/197 (55.84%), Postives = 128/197 (64.97%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSK-PSLP-QLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            PV      K   AGRED DVRMLG+GRPF+LEL D+K  +LP  + A ++    A N          VE+  L  A      A+Q GAD KRKTY C+VWTS    P  +  LN + DL V QKTPVRVLHRRTLLTRPK +H  + E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V SLL C+ADILQLDV
Sbjct:  286 PVFGAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLPADMYATVQAQVNAANTDI-------VEIRELSSATKEGFAALQSGADSKRKTYCCVVWTSGVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVELLNDHYMLLRLTTSAGTYVKEFVHGDLGRTYPNVASLLGCDADILQLDV 475          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A2D4BIW0_PYTIN (tRNA pseudouridine(55) synthase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIW0_PYTIN)

HSP 1 Score: 186 bits (471), Expect = 1.730e-49
Identity = 110/194 (56.70%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALNVTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            P    S  K   AGRED DVRMLG+GRPF+LEL D+K      + +LE L  AVN    R   G VE+  +R +       +Q GAD KRKTY C++ T     P D     + DLV+QQKTPVRVLHRRTLLTRPK +HA   E +NAHY+ LRLTTSAG YVKEFVHGD GRTVP+V SLL  +ADILQLDV
Sbjct:  249 PFFDASRYKFHTAGREDVDVRMLGNGRPFILELLDAKKGTLS-SEELEALKDAVN----RQNDGVVEIREVRPSTKEYFANLQAGADSKRKTYCCVL-TPEAIAPIDA----IQDLVIQQKTPVRVLHRRTLLTRPKIIHAARCEVLNAHYMLLRLTTSAGTYVKEFVHGDRGRTVPNVASLLGADADILQLDV 432          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: H3HD02_PHYRM (tRNA pseudouridine(55) synthase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD02_PHYRM)

HSP 1 Score: 186 bits (472), Expect = 3.460e-49
Identity = 98/195 (50.26%), Postives = 132/195 (67.69%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            P  + +G K   AGRED DVRMLG+GRPF+LE+ D+K +     ++ + + KAVNA       G VE+  ++ +       +Q GAD K+KTY C+VW+     P  +  ++ + DL +QQ+TP+RVLHRRTL+TRPK +HA   E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V S+L C+ADI+QLDV
Sbjct:  289 PFFKGAGYKFHTAGREDVDVRMLGNGRPFILEILDAKKAYLN-QSEYDGIQKAVNAANN----GAVEIVQVKSSTKDYFAGLQAGADSKKKTYCCVVWSEGELTPESVAKIDAIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMMLRLTTSAGTYVKEFVHGDRGRTNPNVASILDCDADIIQLDV 478          
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A3F2RYC7_9STRA (tRNA pseudouridine(55) synthase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYC7_9STRA)

HSP 1 Score: 185 bits (470), Expect = 6.960e-49
Identity = 100/196 (51.02%), Postives = 132/196 (67.35%), Query Frame = 1
Query:  427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPS-LPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
            P  + S  K   AGRED DVRMLG+GRPF+LE+ D+K + L Q  A+ +++ KAVN        G VE+   + +       +Q GAD K+KTY C+VW+     P  +  ++ + DL +QQ+TP+RVLHRRTL+TRPK +HA   E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V S+L C+ADI+QLDV
Sbjct:  291 PFFRGSSYKFHTAGREDVDVRMLGNGRPFILEILDAKKAYLDQ--AEYDQIQKAVNVANK----GAVEIVDAKSSSKDYFTGLQAGADSKKKTYCCVVWSEGALTPESIAKIDTIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTNPNVASILGCDADIIQLDV 480          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA8_ECTSI7.360e-5757.50tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A836CNG6_9STRA2.190e-5657.92tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A6H5KZN5_9PHAE2.220e-5658.50tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A1V9Z0V9_9STRA1.370e-5155.84tRNA pseudouridine(55) synthase n=1 Tax=Achlya hyp... [more]
A0A8K1C5Y9_PYTOL5.990e-5153.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7CT38_9STRA1.500e-5052.94tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
A0A067D9A4_SAPPC1.550e-5055.84tRNA pseudouridine(55) synthase n=2 Tax=Saprolegni... [more]
A0A2D4BIW0_PYTIN1.730e-4956.70tRNA pseudouridine(55) synthase n=1 Tax=Pythium in... [more]
H3HD02_PHYRM3.460e-4950.26tRNA pseudouridine(55) synthase n=1 Tax=Phytophtho... [more]
A0A3F2RYC7_9STRA6.960e-4951.02tRNA pseudouridine(55) synthase n=3 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:499013..502589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue3.3e-47
Seed eggNOG ortholog2880.D8LRA8
KEGG koko:K07583
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG1258@1,KOG2364@2759
EC5.4.99.25
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size1598
Cds size552
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.6432257-UTR-S-ischiensis_contig87:499012..4995011622817354.6432257-UTR-S-ischiensis_contig87:499012..499501Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 499013..499501 +
1695741051.2543323-UTR-S-ischiensis_contig87:499012..4995011695741051.2543323-UTR-S-ischiensis_contig87:499012..499501Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 499013..499501 +
1622817354.715856-UTR-S-ischiensis_contig87:502032..5025891622817354.715856-UTR-S-ischiensis_contig87:502032..502589Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 502033..502589 +
1695741051.314728-UTR-S-ischiensis_contig87:502032..5025891695741051.314728-UTR-S-ischiensis_contig87:502032..502589Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 502033..502589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.65395-CDS-S-ischiensis_contig87:499501..4995641622817354.65395-CDS-S-ischiensis_contig87:499501..499564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 499502..499564 +
1695741051.2707567-CDS-S-ischiensis_contig87:499501..4995641695741051.2707567-CDS-S-ischiensis_contig87:499501..499564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 499502..499564 +
1622817354.666895-CDS-S-ischiensis_contig87:499737..4998121622817354.666895-CDS-S-ischiensis_contig87:499737..499812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 499738..499812 +
1695741051.2810092-CDS-S-ischiensis_contig87:499737..4998121695741051.2810092-CDS-S-ischiensis_contig87:499737..499812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 499738..499812 +
1622817354.6788144-CDS-S-ischiensis_contig87:500170..5002961622817354.6788144-CDS-S-ischiensis_contig87:500170..500296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 500171..500296 +
1695741051.2894802-CDS-S-ischiensis_contig87:500170..5002961695741051.2894802-CDS-S-ischiensis_contig87:500170..500296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 500171..500296 +
1622817354.6911294-CDS-S-ischiensis_contig87:500646..5008001622817354.6911294-CDS-S-ischiensis_contig87:500646..500800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 500647..500800 +
1695741051.297881-CDS-S-ischiensis_contig87:500646..5008001695741051.297881-CDS-S-ischiensis_contig87:500646..500800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 500647..500800 +
1622817354.7022195-CDS-S-ischiensis_contig87:501898..5020321622817354.7022195-CDS-S-ischiensis_contig87:501898..502032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 501899..502032 +
1695741051.3059936-CDS-S-ischiensis_contig87:501898..5020321695741051.3059936-CDS-S-ischiensis_contig87:501898..502032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 501899..502032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20284.1prot_S-ischiensis_contig87.20284.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 499502..502032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20284.1

>prot_S-ischiensis_contig87.20284.1 ID=prot_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
MLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGL
RMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALNVTDLVVQQK
TPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGD
FGRTVPSVGSLLRCNADILQLDVAGVEGSSVGT*
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mRNA from alignment at S-ischiensis_contig87:499013..502589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20284.1 ID=mRNA_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3577bp|location=Sequence derived from alignment at S-ischiensis_contig87:499013..502589+ (Schizocladia ischiensis KU_0333)
TATAAATTGTACTCGTACGAGGTACGATCGCATGTGTGGGAGATTGAGTG TTCTCGTATTACTCGAGTAGTGGTTCAGGAAGAGGTTGGGGTGTCATGTG TGAACATGTGTTTGCCTGCGTGTGTGCGCACGTGTGCGCGCGCCTGCGTG CGTGCGCGTGTGTGTACGTGCGTGCGTGTGCATGCATGTGTGCATATTGT GCGCCCCCAGCTAACGCTGCAGTGATACGTCACTCTCTTCGATTTGATTG CTACGACCGCGTGATGAATGTGCCAAACCGGTGATAGTGACGTCTCAATC GCTGCTTACTCTATACAGCCACTTGACATGTGCCAAGCTCACAACTATCC GTCCCTTCATCGCTGCAGCCGCCCGATGAGTGCCACACTACCAACAATTT CTTGTTGATTGCAACGACAACCACCTCCTGTGTGCCAGTGCTCTGGCTCG AAACTGGTGGGCGCCGGGAGGGAAGACGCCGATGTGCGCATGCTGGGGGA CGGGCGGCCCTTCGTGCTGGAGCTGGCCGATTCTAAGCCATCCTTGCCCC AGGTGCGATAGGTCTAAGGGCCGTTGATAGCGGCGCCAAAATCGGCACTT TTTTGGCCGACAAAATGCCGAAAAGTGGCGGTTGACTTTTGAAAAAGCTT GGCCGCTGATTGAGGCCGCGAACGGCCCCTTCCCTACCCATCCGTTCGCG CCCCTGCCTGTGCGGTGCATGGCAGCTCGCGGCCCAGCTTGAACGCCTGA CCAAAGCCGTGAATGCTGGCACGGGGCGCAACGAAGGCGGAGGCGTTGAG GTGGGTGTGAGACAAATATATTGTGACAATGATTGTCGCACCTGTGGCGT ATTTTGAGTGTTCAATGGTGTTTGAGGGGGTAAAACGGTACTTACATGTT CCCCGTTCCCCACACACACCTCCGGTGGCGAGCTAAGGAAGGGCCACTAC AGTTTTTGAGGTCTTTAGTGACGTGGCCTGCACCTCGCCCTGTGTTGTTC CTGATAGTACTGTGGTTTGACATCACAACACATCGCATCACATCAAGGTT TCAAATCTCCGACGATTGGTTACGGGACCGGTACAAGTAGTGAGGTAATC AATGCACAGCCCTCATGCATGGAATGTTTTGGCGCCTGGCCCTCCCGCGC CTGTCCAGGTGGCAGGGCTGCGCATGGCCGGGCCCGGGGCCGCCAAGGCC ATTCAGGAGGGCGCGGACGAGAAGAGGAAGACGTACGCCTGCTTGGTGTG GACCTCCCGCCCGACCATGCCGGCAGACATGCAGGTGCGTGTGCTTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGTGCGTGTGTGCGGGT TGGTGTGCGTGTGTGTGTGTATGCGTGCGCGCTCGTACTCACTGTCTGTC CGTGCATGGTGCGCGTCCGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC GCGTGCGTGAGTGCTTTGTGCGTGTGTCTGTGTGTGCATGTGTGTGTTCA TGTGTGCGTGCGTGCATGCGTGTGCACGTGTGTGTTTGCGCGTGCGTGCG TGCGTGCGTGCGGGGGAAGGGAAGCGGGATTGAGTCGAAACGAAGGAAGC CCTTTCTGCTCTCCCTCGCCGGCACACAACCCAGGCCCTGAACGTTACGG ACCTGGTGGTGCAGCAGAAGACGCCCGTGCGTGTGCTCCACCGGCGCACG CTCCTCACCCGCCCCAAGACCCTGCATGCCATGACCGCCGAGTGGATCAA CGCGCACTACCTCACGCTGCGCCTCACCACCTCCGCAGGTGAAGCGTGCG TCCAATGTGGTGTGGTGTGATGTGAAGCGACGCGATGTGATGCTTGTGTC CCAACTTGGCCGGATGCAAGTACAGTACTCGTACAAGATTGTCACTTCTG TACTACTGTACTACAGTACTACCTACAAACTGCAGTATCTTAGGCGGGCG TACATTACAGCACAGTGCTTGGAGACACGTTTTCGGTACGTGAATAGCAA GTCTCATTGCTGCGACATGTACTGTACTTGGAAGTACCCCCCGCGCGCAC GACCGCTTCTTCCTGTTTGGTCACCCCTCTTGGATGCGTGTCAATGGCCA TATAGTTGTTGCAGGCAACTCGCAAGAATCTGATTGCAAGTTGTAGTTGG TGGAAGGTTATTGCATGCAAAATGTATAAAACGGGCGGCGAGTTACCTAC ATGGAACTTCCGGAGGCAATAGCTCAACGACGGCCAATAGCTCTAATTTC ATTGGCCAGTCGGGCCCCGAGTTTGGTACACCTTCTTCCCGAGGGCAAAG ACGAAAGCCGGGCTTGGCGCACAAGGTCGGGGGGTGGCAAGGCCAATCCG GAGGGGGAAGCGGGCACCAACGCGCCCTGCCCCCCGCCGTTCAAGCTAGA GTACGAACAGCGAGGAAAACTTATGGAGAGAACCTTCGACCTTGACACGC AAATCGCGGTAGCCAAGCATGCCCTCGAGAAGGTCGAGGGGGCGCGGGGC AAGGACGGAACCCGCGGTGCCGGCCCCACAGCGGGGCCGTGGCCCGGCCT GCTCAGTCGCCAGAACGTGCAAGCAGCGGTTCACAGACCTGAAGTCGGAG GCTGCCGTCGACAAAGACCAGAGAAAAAGTCCCACAACAAAGGGCGGGCT GCTGCCAGAGCAAAAATGGGAGGGTGCAAAATCCACTGAAGCAAAATGGG AAGGGGGGGCAACAACTCAACGACGTGCAAGAACTCTAAATTTAATGAAG CACATTGCTGATTAAAACCAATTTTGCGGCAAGAACTTAAAGTACGCAAT AACCTTCCGCCGATCGCGGTATTCCAAATTATTCTCATGGGCACCCCCGC TCCTCTCTCCCCGGGCCGGCTCTGTTTGGCGTGCAGGCTTCTACGTGAAG GAGTTTGTGCACGGGGACTTTGGGCGAACGGTCCCCAGCGTGGGCTCGCT CCTGCGGTGCAATGCCGACATCCTCCAGCTGGATGTTGCGGGCGTGGAGG GCTCCTCTGTGGGCACCTAAGTCAGCGTTCTGAAGCATTCACAGGGAAAT AAAAGCACAGGGCGAGGTGCAGGCCATGTCACTCAGGACCTCGACAGTGG CCCTGCCTTAGCTCCCCACGGAAGGCGTGTGTGGGGAAGCGGCGGGGAAG GAGGATAAGCAGAAGGTTGAAACTCAGCACTTCTTGCAGGCATGTGCGGG TAGCTGTTGCAGAGTACCAGTACGTGTGCTTGTGGCATTGTGTGCGACTC ACCTTGTGTCGAGTACCGAGTTTGAACTCAGCACTTGTTCGACGCACACA AGAACTTTCAAAACTCAGCACCTATGACAGAGTACTTTTGAAACTCAGCA TAGAACGCCTCATTGTGTTGTGTGCTCACCGCGCACTACATACACACTGT ACAAGTACTGTAGAGCACCTTGTATCTCAGCACGTGGAGCCACAGTGATT GTCACAACATACGGCATGTGTGCCTCAGGCTGTAGCTGTGACAGTTCCGT TGGCTCCGGGTCCTGGAGTAGCCAGTTCAATCACAGGAAGCGTACCACAT GCCGGTACAACCCCTCCTCCACCTCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:499013..502589+

>mRNA_S-ischiensis_contig87.20284.1 ID=mRNA_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig87:499013..502589+ (Schizocladia ischiensis KU_0333)
ATGCTGGGGGACGGGCGGCCCTTCGTGCTGGAGCTGGCCGATTCTAAGCC
ATCCTTGCCCCAGATGCTGGGGGACGGGCGGCCCTTCGTGCTGGAGCTGG
CCGATTCTAAGCCATCCTTGCCCCAGCTCGCGGCCCAGCTTGAACGCCTG
ACCAAAGCCGTGAATGCTGGCACGGGGCGCAACGAAGGCGGAGGCGTTGA
GCTCGCGGCCCAGCTTGAACGCCTGACCAAAGCCGTGAATGCTGGCACGG
GGCGCAACGAAGGCGGAGGCGTTGAGGTGGCAGGGCTGCGCATGGCCGGG
CCCGGGGCCGCCAAGGCCATTCAGGAGGGCGCGGACGAGAAGAGGAAGAC
GTACGCCTGCTTGGTGTGGACCTCCCGCCCGACCATGCCGGCAGACATGC
AGGTGGCAGGGCTGCGCATGGCCGGGCCCGGGGCCGCCAAGGCCATTCAG
GAGGGCGCGGACGAGAAGAGGAAGACGTACGCCTGCTTGGTGTGGACCTC
CCGCCCGACCATGCCGGCAGACATGCAGGCCCTGAACGTTACGGACCTGG
TGGTGCAGCAGAAGACGCCCGTGCGTGTGCTCCACCGGCGCACGCTCCTC
ACCCGCCCCAAGACCCTGCATGCCATGACCGCCGAGTGGATCAACGCGCA
CTACCTCACGCTGCGCCTCACCACCTCCGCAGGCCCTGAACGTTACGGAC
CTGGTGGTGCAGCAGAAGACGCCCGTGCGTGTGCTCCACCGGCGCACGCT
CCTCACCCGCCCCAAGACCCTGCATGCCATGACCGCCGAGTGGATCAACG
CGCACTACCTCACGCTGCGCCTCACCACCTCCGCAGGCTTCTACGTGAAG
GAGTTTGTGCACGGGGACTTTGGGCGAACGGTCCCCAGCGTGGGCTCGCT
CCTGCGGTGCAATGCCGACATCCTCCAGCTGGATGTTGCGGGCGTGGAGG
GCTCCTCTGTGGGCACCTAAGCTTCTACGTGAAGGAGTTTGTGCACGGGG
ACTTTGGGCGAACGGTCCCCAGCGTGGGCTCGCTCCTGCGGTGCAATGCC
GACATCCTCCAGCTGGATGTTGCGGGCGTGGAGGGCTCCTCTGTGGGCAC
CTAA
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