mRNA_S-ischiensis_contig87.20284.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI) HSP 1 Score: 209 bits (532), Expect = 7.360e-57 Identity = 115/200 (57.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 439 CSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVN-AGTGRNEGGGVEVAGLRMAGPGAAKA-IQEGADEKRKTYACLVWTSRPTMPADMQALNVTD----LVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
C L GAGRED DVRMLG GRPF LEL DS S+ ++AA+L L AVN AG +N GGGV V+ L+++GPG + +Q + KRK Y C+VW SRP ++ D LVVQQ TP+RVLHRRTLL RP+++ M AEWIN H+ L L TSAG Y+KEFVHGD GRTVPS+GSLL C ADILQLDV VE
Sbjct: 383 CVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 582
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA) HSP 1 Score: 210 bits (534), Expect = 2.190e-56 Identity = 117/202 (57.92%), Postives = 138/202 (68.32%), Query Frame = 1
Query: 430 VCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQA-LNV----TDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
+ +C KL GAGRED DVRMLG+GRPFVLE+ DSK + QLA L RL + VNA TG N G VEV+ ++ G IQEGA+ KRK Y C+VWTSR A++ A L+ DL V+Q TPVRVLHRR LTR KT+ A+ A + + L LTTSAG YVKEFVHGD GRTVPSVG+LL C ADILQLDV GV+
Sbjct: 471 LARCREVKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGLNSEGAVEVSDFKLVGRDIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAGTYVKEFVHGDLGRTVPSVGALLGCRADILQLDVVGVD 672
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE) HSP 1 Score: 211 bits (538), Expect = 2.220e-56 Identity = 117/200 (58.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 439 CSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVN-AGTGRNEGGGVEVAGLRMAGPGAAKA-IQEGADEKRKTYACLVWTSRPTMPADMQALNVTD----LVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDVAGVE 1020
C L GAGRED DVRMLG GRPF LEL DS S+ ++AA+L L AVN AG +N GGGV V+ LR+AGPG + +Q + KRK Y C+VW SRP ++ D LVVQQ TP+RVLHRRTLL RP+++ M AEWIN H+ L L TSAG Y+KEFVHGD GRTVPS+GSLL C ADILQLDV VE
Sbjct: 589 CVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEGKRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 788
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A1V9Z0V9_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0V9_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.370e-51 Identity = 110/197 (55.84%), Postives = 127/197 (64.47%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSL--PQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
P + K AGRED DVRMLG+GRPF+LEL D+K + P+ A ++ A N VEV L A A+Q GAD KRKTY C+VWTS PA + LN + DL V QKTPVRVLHRRTLLTRPK +H E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V SLL C+ADILQLDV
Sbjct: 281 PEFRAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLSPEAFATVQNRVNAANLDV-------VEVRELTGATKEGFAALQSGADSKRKTYCCVVWTSGVLTPARVATLNGIVDLKVAQKTPVRVLHRRTLLTRPKVIHDARVEVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTFPNVASLLGCDADILQLDV 470
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A8K1C5Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Y9_PYTOL) HSP 1 Score: 191 bits (486), Expect = 5.990e-51 Identity = 105/197 (53.30%), Postives = 134/197 (68.02%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSR---PTMPADMQALNVTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
P + SG K AGRED DVRMLG+GRPF+LE+ D+K S A+ E+L AVN G VE+ ++ + +Q GAD KRKTY C+VW+ + P + A + A++ DL +QQ+TP+RVLHRRTL+TRPK +HA E +N HY+ LRLTTSAG YVKEFVHGD GRTVP+V ++L C ADILQLDV
Sbjct: 316 PFFKGSGYKFHTAGREDVDVRMLGNGRPFILEILDAKKS-KLTPAEYEQLQAAVNT----THQGAVEIREVKASTKEYFGKLQAGADSKRKTYCCVVWSEKELTPDLVAKLDAIH--DLTIQQQTPIRVLHRRTLMTRPKVIHATKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTVPNVSTILECEADILQLDV 505
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A3R7CT38_9STRA (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CT38_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.500e-50 Identity = 99/187 (52.94%), Postives = 121/187 (64.71%), Query Frame = 1
Query: 451 KLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
K AGRED DVRMLG+GRPF+LEL + A + R + VN VE+ G ++ +Q GAD KRKTY C+VW + P + LN ++DL V QKTPVRVLHRRTLLTRPK +H+ +N HY+ LRLTTSAG YVKEFVHGD GRT+P+V +LL C+ADILQLDV
Sbjct: 51 KFHTAGREDVDVRMLGNGRPFILELIGGR-------APVARALRKVN----ETNADRVEIRGFQLTDKKRFSVLQAGADSKRKTYCCVVWVAEKLTPDRVATLNSISDLAVAQKTPVRVLHRRTLLTRPKVIHSANVTVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTLPNVSTLLGCDADILQLDV 226
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC) HSP 1 Score: 190 bits (482), Expect = 1.550e-50 Identity = 110/197 (55.84%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSK-PSLP-QLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
PV K AGRED DVRMLG+GRPF+LEL D+K +LP + A ++ A N VE+ L A A+Q GAD KRKTY C+VWTS P + LN + DL V QKTPVRVLHRRTLLTRPK +H + E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V SLL C+ADILQLDV
Sbjct: 286 PVFGAKSYKFHTAGREDVDVRMLGNGRPFILELLDAKVATLPADMYATVQAQVNAANTDI-------VEIRELSSATKEGFAALQSGADSKRKTYCCVVWTSGVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVELLNDHYMLLRLTTSAGTYVKEFVHGDLGRTYPNVASLLGCDADILQLDV 475
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A2D4BIW0_PYTIN (tRNA pseudouridine(55) synthase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIW0_PYTIN) HSP 1 Score: 186 bits (471), Expect = 1.730e-49 Identity = 110/194 (56.70%), Postives = 128/194 (65.98%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALNVTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
P S K AGRED DVRMLG+GRPF+LEL D+K + +LE L AVN R G VE+ +R + +Q GAD KRKTY C++ T P D + DLV+QQKTPVRVLHRRTLLTRPK +HA E +NAHY+ LRLTTSAG YVKEFVHGD GRTVP+V SLL +ADILQLDV
Sbjct: 249 PFFDASRYKFHTAGREDVDVRMLGNGRPFILELLDAKKGTLS-SEELEALKDAVN----RQNDGVVEIREVRPSTKEYFANLQAGADSKRKTYCCVL-TPEAIAPIDA----IQDLVIQQKTPVRVLHRRTLLTRPKIIHAARCEVLNAHYMLLRLTTSAGTYVKEFVHGDRGRTVPNVASLLGADADILQLDV 432
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: H3HD02_PHYRM (tRNA pseudouridine(55) synthase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD02_PHYRM) HSP 1 Score: 186 bits (472), Expect = 3.460e-49 Identity = 98/195 (50.26%), Postives = 132/195 (67.69%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
P + +G K AGRED DVRMLG+GRPF+LE+ D+K + ++ + + KAVNA G VE+ ++ + +Q GAD K+KTY C+VW+ P + ++ + DL +QQ+TP+RVLHRRTL+TRPK +HA E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V S+L C+ADI+QLDV
Sbjct: 289 PFFKGAGYKFHTAGREDVDVRMLGNGRPFILEILDAKKAYLN-QSEYDGIQKAVNAANN----GAVEIVQVKSSTKDYFAGLQAGADSKKKTYCCVVWSEGELTPESVAKIDAIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMMLRLTTSAGTYVKEFVHGDRGRTNPNVASILDCDADIIQLDV 478
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Match: A0A3F2RYC7_9STRA (tRNA pseudouridine(55) synthase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYC7_9STRA) HSP 1 Score: 185 bits (470), Expect = 6.960e-49 Identity = 100/196 (51.02%), Postives = 132/196 (67.35%), Query Frame = 1
Query: 427 PVCQCSGSKLVGAGREDADVRMLGDGRPFVLELADSKPS-LPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLRMAGPGAAKAIQEGADEKRKTYACLVWTSRPTMPADMQALN-VTDLVVQQKTPVRVLHRRTLLTRPKTLHAMTAEWINAHYLTLRLTTSAGFYVKEFVHGDFGRTVPSVGSLLRCNADILQLDV 1008
P + S K AGRED DVRMLG+GRPF+LE+ D+K + L Q A+ +++ KAVN G VE+ + + +Q GAD K+KTY C+VW+ P + ++ + DL +QQ+TP+RVLHRRTL+TRPK +HA E +N HY+ LRLTTSAG YVKEFVHGD GRT P+V S+L C+ADI+QLDV
Sbjct: 291 PFFRGSSYKFHTAGREDVDVRMLGNGRPFILEILDAKKAYLDQ--AEYDQIQKAVNVANK----GAVEIVDAKSSSKDYFTGLQAGADSKKKTYCCVVWSEGALTPESIAKIDTIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTNPNVASILGCDADIIQLDV 480 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20284.1 >prot_S-ischiensis_contig87.20284.1 ID=prot_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp MLGDGRPFVLELADSKPSLPQLAAQLERLTKAVNAGTGRNEGGGVEVAGLback to top mRNA from alignment at S-ischiensis_contig87:499013..502589+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig87.20284.1 ID=mRNA_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3577bp|location=Sequence derived from alignment at S-ischiensis_contig87:499013..502589+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig87:499013..502589+ >mRNA_S-ischiensis_contig87.20284.1 ID=mRNA_S-ischiensis_contig87.20284.1|Name=mRNA_S-ischiensis_contig87.20284.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig87:499013..502589+ (Schizocladia ischiensis KU_0333)back to top |