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Homology
BLAST of mRNA_S-ischiensis_contig87.20278.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 1.950e-16 Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 1 DQEYYSPDIEQRGVTVTKMTGVGKSEVCKLFVRGDGFQLVTPERRVFRPQSRSFRFRDLTSVVVSGDRSLALSVNSSNKDIFLTAADRSTTEYIVDCLCRGRRDEKRRQ 327
+ E Y P++E RGV V K + GKSE+ +L+VRGD +LV PE+R+FR QS+ F +LT+VV G+RSL+LS+ + K + LT ADR+T EY+ + L R R++ R Q
Sbjct: 33 EPEPYPPNLE-RGVKVRKRSMAGKSEIRRLYVRGDTIELVNPEKRMFRSQSKVFPLSELTAVVAQGERSLSLSLGA--KGLHLTLADRATKEYLWEHL-RKMREQAREQ 137
BLAST of mRNA_S-ischiensis_contig87.20278.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.010e-16 Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 1 DQEYYSPDIEQRGVTVTKMTGVGKSEVCKLFVRGDGFQLVTPERRVFRPQSRSFRFRDLTSVVVSGDRSLALSVNSSNKDIFLTAADRSTTEYIVDCLCRGRRDEKRRQ 327
+ E Y P++E RGV V K + GKSE+ +L+VRGD +LV PE+R+FR QS+ F +LT+VV G+RSL+LS+ + K + LT ADR+T EY+ + L R R++ R Q
Sbjct: 33 EPEPYPPNLE-RGVKVRKRSMAGKSEIRRLYVRGDTIELVNPEKRMFRSQSKIFPLSELTAVVAQGERSLSLSLGA--KGLHLTLADRATKEYLWEHL-RKMREQAREQ 137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 89.0 |
| Seed ortholog evalue | 3.5e-15 |
| Seed eggNOG ortholog | 2880.D8LRB0 |
| KEGG ko | ko:K10407,ko:K19360 |
| KEGG Pathway | ko05132,map05132 |
| EggNOG free text desc. | determination of stomach left/right asymmetry |
| EggNOG OGs | COG0457@1,KOG1840@2759 |
| Ec32 ortholog description | NB-ARC and TPR repeat-containig protein |
| Ec32 ortholog | Ec-06_003200.3 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03019,ko03036,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 753 |
| Cds size | 750 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817350.2144344-CDS-S-ischiensis_contig87:465557..465998 | 1622817350.2144344-CDS-S-ischiensis_contig87:465557..465998 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 465558..465998 - |
| 1695741047.7479646-CDS-S-ischiensis_contig87:465557..465998 | 1695741047.7479646-CDS-S-ischiensis_contig87:465557..465998 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 465558..465998 - |
| 1622817350.229466-CDS-S-ischiensis_contig87:467415..467541 | 1622817350.229466-CDS-S-ischiensis_contig87:467415..467541 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 467416..467541 - |
| 1695741047.7624242-CDS-S-ischiensis_contig87:467415..467541 | 1695741047.7624242-CDS-S-ischiensis_contig87:467415..467541 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 467416..467541 - |
| 1622817350.2412565-CDS-S-ischiensis_contig87:469001..469145 | 1622817350.2412565-CDS-S-ischiensis_contig87:469001..469145 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 469002..469145 - |
| 1695741047.7758586-CDS-S-ischiensis_contig87:469001..469145 | 1695741047.7758586-CDS-S-ischiensis_contig87:469001..469145 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 469002..469145 - |
| 1622817350.2521183-CDS-S-ischiensis_contig87:471662..471701 | 1622817350.2521183-CDS-S-ischiensis_contig87:471662..471701 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 471663..471701 - |
| 1695741047.7868207-CDS-S-ischiensis_contig87:471662..471701 | 1695741047.7868207-CDS-S-ischiensis_contig87:471662..471701 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 471663..471701 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20278.1 >prot_S-ischiensis_contig87.20278.1 ID=prot_S-ischiensis_contig87.20278.1|Name=mRNA_S-ischiensis_contig87.20278.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=250bp
DQEYYSPDIEQRGVTVTKMTGVGKSEVCKLFVRGDGFQLVTPERRVFRPQ SRSFRFRDLTSVVVSGDRSLALSVNSSNKDIFLTAADRSTTEYIVDCLCR GRRDEKRRQLLQLDRHRHQRQDPHASYHDAQWQQVQRPAAHLRRTSSTDS LMALAATTPPSSATPVTAAAAASQGGGRPRHHLRRLRRIQSLNDVSVDEN RCRGSGDVSSGVGGGGGDDDDGGGGGGGRGHEGEGEGAGKQSGGGGGRDD back to topmRNA from alignment at S-ischiensis_contig87:465556..471701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig87.20278.1 ID=mRNA_S-ischiensis_contig87.20278.1|Name=mRNA_S-ischiensis_contig87.20278.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6146bp|location=Sequence derived from alignment at S-ischiensis_contig87:465556..471701- (Schizocladia ischiensis KU_0333) GATCAAGAATACTATTCACCGGACATTGAGCAGAGGGGGGTGAGTGCGTC
TCATGGAGTAGAGTAAGTCTATCTGGCCCCCATGCCCACCCGCCCGCCCG
AAAGGGGCGATAGACACTGGTTTTAGTGAGATGCACTCCGATGGCTGTCG
ACATGCGCCCGACGCTCACGTCAGTGCCACAAGAACAAAACGTATCGGCC
ACTTTCGACTTGGGCCCCGGTGGTCAATGCCGGTTTGCGTCACGCAGGGT
TGGCACGTAGAGGTTAATTAGGGCCGAATTAGCCTTCATTTTGGTCTAAC
TACCCCTAACTACCTCTAATTGAGGGCCTAAAAGGGCACCACTTAGGTGT
TCAGTGCCACCCTAGCGTCGAGTGCCCACATTGCAATGTGAGATCCTCTT
ACATAGTTTGCACAATGCTCTCGCGCTTTGCGCAGCTCGACGGCATATCA
CAGGCACGCACAGCGTGAGTACATTGCTTCTGTGCTTCCAATACAAGCTG
TTGCGTACAATAGTGTTTTGAGGTGGCTGGGAATGTGAGTCTTCTTCGCA
GCCCGCAGCAAGCCCGAGCGGGTTTTCCGTTTCGGTTTTTATCCCCGGTA
GCGCTCGCGGGACCGGGTTTTGCCTTGTTTTGGAGCATATTGTATTCTTC
GGCCGAGCCACTTTTTGCTAGGTTTTTTATGTACCTGGCAGGCGTTTTTG
ACGTTACCGGTATGGCTTGGGCAGGACGGCTCTAGCGGAGCTCCAAAAAG
GCATGCAATCCAAGGGGGGCAAGCCGGCCTCTCGGCCGGTTAAACTCGTT
GCCGATTCACGCCTCTGCAATGTATCCTACTGCAGAATACTCGACTATAC
TTCGAAATGTATAGAGCTATATATATATGTTTAGCGGCGGGGGGGGGGAC
TGGCACCCCTCCGCCCATGGCGGATGTGCGCCCCCCCCCCTCCCACCCTG
GCTCTGCCGGGGCAGGGAGGGGGGCTGCTCCGTATCGGTCGAGGCACGGG
GTCAATGGTCTCGGGACTGCGGCAAGCACTGTTAGGTGTGAGTACTGCAG
TAGTATGTTTGTGTGAGGGTCCATGGCCGAAGAAACCTATGAGTATGCAT
GGGGTAGCACTGGTAGGTGTGAGTACTACAGCAGTACGTTTGTGTGAGGG
TATATGGCCGAAGAAGCCTATGAGTATGCACGGCGTGCGGAGGAGACCAT
CACGCGAATCATGAGTACCTGCTGTGTGCACAGTTTTGCTAACTATGACG
TAGATGGGTATATCGAACATCAGTATCCTTATCTACTTGGGTACGTTGAG
AACTCACTCTGCTAGTATAGCGCGAGGGTCCATGGCCGAAGAAGCGCCAT
GAGTATGCACAGCGTGCGGAGGAGTTAAGACCATTCACGCAGATCACTAC
AGTAGTTCGTACTCAAGGAGATTGGTGGTCAATCACCAGGTAGTTATGGA
GATTGGTTTTCAGTCGCCAAGTAGTTAAGGAGATTGGTTTTCAGTCACCA
AGTAGTCAAGGATATTGACTATGCACAGCGTGTGGAGGAGTTAAGACCAT
GCACGTGAATCGCGAGTACAAGCGTATAGTTCCAAGTGTTAAATGAGGCT
CCGATTCCCTCGCAAGCAGACCTATCGAACTGCGCCCGGGCGCACATTTG
ACCCAGATATCGTCACTGCCGCACATGCGCGGTTCCCGCTTACTACTATG
GAATTAACAGGAACAATACAGGGCGAGGTGCAGGCCACGTTACAAAAGGC
CTCAAACGTGGCCCTTCCTTAGCTTGCCAGGCAAGTAGTACGTGGAGAAG
GGGACGGGGGGGCGCAGGAGGAGGAGGAGAAAGAAAGAAGGGGCAGTGCT
ACAGTAGGTAGTTCTGGAGATCCACAATTTGCCCGTCAGTGTTTGGCGGC
GACATTGTGATATGTGGGCGCTGTGTGGGTGGTGCAGTTGTGCTCGTACT
TCGAGTACTACGTAGTATGTATTTGGCGTGCCCTGGGTGGGTGGCTGCTT
TGAAAGAGCTGCTGCACGCGGTACATGCTCTCGGGGCTATGGCAAGCGCC
ACACGAGCACTGTACTGCAGCGCGTAGTGCCTACTGGTAGTTGGAAGCAT
GCAGTGCGTTCCAGATGCTTGGAACCAAGTGTGCAGCCCGTGATGCATCC
GGGGGACACGCGGTTCTGCCAAGCGTTTACTGGAGTATACAAGCTTTAGA
GTACCCAAGGGAAAGAATGATCAAGCTAAAGAGTACCCAAGCTACAGAGT
AAACAAGGTCAAGCGCCCGCTTTCTCCCGGGGCAGGTTTCGACATCATTC
ACGTTGGGGGCGATAGCACAGGCCAAGTTCAATGATGGTGCCACCTGCCA
GAGAGCTCCCTCTCCTCCTGCCCCCCCCACCAACGCCTTCCTCCTCCTGT
CTCTCCCCGCCGCTGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCCTTCCCCCTCCTCCTCCTCCACCACCACCACCACCCCTTCCCCCCACC
CCCCCTCCCCCCCTCCTCCCCCTCTGGCCCCCCTCCCGGCCCCGCCCCCG
GCGCAGGTGACGGTGACGAAGATGACGGGTGTGGGCAAGTCAGAGGTGTG
CAAGCTGTTTGTCCGCGGAGACGGCTTCCAGCTGGTGACCCCCGAGCGGA
GGGTCTTCCGGCCCCAGTCCAGATCCTTCCGCTTCCGCGACCTCACGTCG
GTGAGCTTCACATTTTGGGTGATGATGATGATGGTGATGATTGTGATGAA
ACGATGACGATTATGGAACGACAACGATTGCGGCGGCGGCGGCGGCGGCG
GCAGCAGCGGCTGTTGATGATGATTATGATGAAACGAGGACGATTATGGA
ACGACAACGATTGCGGCGGCGGCGGCAGTGGCGGCTGTTGTTGATGGTTA
TGATGAAACGAAGACAATTAGGGAACGATAACGATGGCGGCGGCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGGCGCGTTCGGT
TGGGGTGGGCCGTAAGGGTGTGGGCTAAAAGGGTGGTTTAGGGTTTTTGT
TTTGGGGTTGGGCTATAAGGCAAGAATGGTCCATTTTTTTTTGCCGCTTT
TTTGTTCACACGGCTCCTCCCGCCTCAAGGGCCATTCCCCTGTCCAATGT
TCATCGAAATCCGCCGATTGCCTAGACCGCAGTTCATGCATGTTCACTCC
TCCCATCTGAAGGGCCGTTCCCCTGCCCAAATGTTCACAGAGATCCCGTT
CATTACGCGGAGCAGCTCGTGAATGTCACCCGTTCATTGTAAGTATTTTT
CAACTACAGAACATACTGTAGTACCGTCTGTGGCACTGCGAAGTATGTAC
TCGAGTACTTGCTTACTCCCTTGGATGGCTGTCAAGCACTAAGGCGTCGT
GCACCACGACACCGCCCATCAGCGCTTCATGCGCCTTCCCCGCAGGGTGC
GGTTTCAAGGAGATTAAATTATCTTTACGGCTGCATGCACACCTTGGACG
GGGTGTGCCTTCTTAAAGCTTGAAACGCGCCTACAAAACGCCTCCGCATA
TCTACCAAAACTCGCCGTAGCTGCTCCGAAGTACTCGAGTCTATCCCAAA
CGAACAGTACCATGCAATGCACTGTAGCACAGGGTGCTCCCCTCCTCTGA
GCCTGCAATCGACCTACTGTAATGTCGAGTCGCACTGCCACAAAACTTGA
CAATGGCGTCCAATGTTCCTAAAAAACCCGTCCACTACGAGGGACAGCTC
GTGGATGTTCAACTTTTATAGTAATTTTATCACAATTATTGCTATCGTTT
CTCGACACGCCCAACCGTGTGGGTCGATTTATTGCATATATTCGTGTACA
GTAGAAATGAACAAACATCTACGCTGTTGGAAATAATTCAACTACAGCGC
AGCAATTCTATACGAAGTATACTACTTCATACGTACAGTAGCATGTGCAA
CAATCAACGGATCCCAAACTGCTGGAGCATCATCCGACTAAACTACATAC
AGCACATGCTCAGTACCTGCTCCGTCTCGATCGAGGCGCGTGGTCAATGG
TCTCGGGACTACGGAAAGCCCAACGTGAGTACATATATATATACATACTC
AGTGCCCTCTGTAGCGCCTTGAAGTACTCGCTTTCTCTCTTTGATGCCCC
GAAAACGCAGGTGGTGGTGAGCGGCGACCGCAGCCTGGCCCTGTCTGTGA
ACTCTTCCAACAAGGACATCTTCCTCACCGCGGCGGACCGCTCCACCACA
GAGTACATCGTGGACTGCCTCTGTAGGGGGCGGCGGGCAAGTGGATGAGT
TTCGAATAGTTGTAGCGTCCGATGCGCGACATATCGGAACGTCGGGCCCG
GAGACCGGCGCTCGAAACGCACGCATCGAAACATCACAGTACTGCGCGCT
CAGTGCTCCTCGCGAACGTCTTATATATATATAATATTTGGAAGTAACGA
GGGGCGCTACAGGCTTGCTGTAATAGTTGGGGAGGGTTGAGTTTCGAGAA
CCCAAGTAGTTGGTGGACTGAGTTTCAAGATACCCAAGTAGCTATGAGAC
TCAGTCAATATTGTAGTACGAGTGAGTACTCTGCTCTACTCTATGATCTC
ACAATGGTATGCATGCGAGGCCAATGGCCGAAAGGCTGCCCTGCGCCCTG
GGGGGGATGATTCGTGGTCTTGCACGGCGTGTACCAGGATGTGATGTGAT
GTGTACTCTAATGTGCAGTAGTTTGACATCACACCACATCACATCGCATC
GGTGGTCCACCCTGGAGTGTGCTGGGCCGACGGACGGACGGTGGTATGCG
AGGACATGACACGGGGTAGTAGGCAACTAATAGCAATCCTGTCCGCCGGA
CGTGAGTACGAGTCCTTGCTGTAGAATCTCACCTGTGTGAGCAACGCGCT
CGTTGAGATTGATGCTATGTATTGGGATGGGATGTGGCATCAAACTACAG
TACATCAGAGTAAGCATCACATCATATCACATCGTATCACATACCGTATT
TTTTGGAGAATGCCCCCCCCCCCCCGCGCAACAATCGTCTGGAGAATGCT
CTTCGAAGTAACTAGTTTAGTCCCAAGTTGCCACTTTCCCCCCGGGTTTT
CTGTGCAAATCCAACCAGTGTCAACCAGTGTTGGGCGACACACGCCCTCC
CCATTGAAAAAGACTACGAAATAAGGAGAACAAACACACGTACTTCACAG
TCTTGATAGTTGGCATTTGTCCTTTTTTTGCCTTTTTCCCATGCCGATCC
GGCCATCATTCGGCAAGAAAAGCCCTCCCCAGAATGGACGCGGGCCGGCA
AGATCTTCCAACTCTCCGACAAATACGGCAACGTGTGTGTGCGCGGGAAA
GTGCTCACCCATGTACACACTGCCTAGTACTCGCATTGTGCATGCCCCAT
GGAGGTACAGTAGGTAGCCCGGAGCCATTTGTATGTTGTGTGTGTCTGTG
TCTGTCTGTCTGTGTATGCGCGCACGTGTGCGTGCGTGAGTGTGCACGCG
TTGCGGCCGCACTCGTCATTCGTACGGCGCCTCTCGCCTTGCCCTCGCCA
CGAGCATCCACCCAAGCGACGGCGTTCTCGGGGCACGGCAGTACCACCAA
AGTATGCACGTCGGCCAAAACCAAAAAGCCAAACCCATTAGCCGCCGCCG
CCGCCGTCGCCCTGACGCCATCGATCGCCGGCCTTCGACAAAAAACTCCG
CAGGATGAGAAGCGGCGGCAGCTTCTCCAGCTAGATCGGCACCGCCACCA
GCGCCAGGACCCGCACGCCTCCTACCATGACGCTCAATGGCAGCAGGTTC
AACGGCCCGCGGCCCACCTCCGCCGCACCTCCAGCACAGACAGCCTCATG
GCACTTGCGGCAACCACGCCCCCCTCGTCTGCCACCCCTGTCACTGCCGC
CGCCGCTGCGAGCCAAGGCGGTGGCCGCCCCCGGCACCACCTGCGCCGGC
TCCGGCGAATCCAGAGCCTGAATGACGTCTCAGTGGATGAGAACAGGTGC
AGGGGCAGCGGCGATGTCAGCAGCGGGGTTGGCGGCGGCGGCGGCGACGA
CGACGACGGAGGAGGAGGAGGAGGAGGACGAGGACATGAGGGGGAAGGGG
AGGGAGCTGGCAAACAGAGTGGAGGAGGGGGGGGAAGGGACGATGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig87:465556..471701- >mRNA_S-ischiensis_contig87.20278.1 ID=mRNA_S-ischiensis_contig87.20278.1|Name=mRNA_S-ischiensis_contig87.20278.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig87:465556..471701- (Schizocladia ischiensis KU_0333) GATCAAGAATACTATTCACCGGACATTGAGCAGAGGGGGGATCAAGAATA CTATTCACCGGACATTGAGCAGAGGGGGGTGACGGTGACGAAGATGACGG GTGTGGGCAAGTCAGAGGTGTGCAAGCTGTTTGTCCGCGGAGACGGCTTC CAGCTGGTGACCCCCGAGCGGAGGGTCTTCCGGCCCCAGTCCAGATCCTT CCGCTTCCGCGACCTCACGTCGGTGACGGTGACGAAGATGACGGGTGTGG GCAAGTCAGAGGTGTGCAAGCTGTTTGTCCGCGGAGACGGCTTCCAGCTG GTGACCCCCGAGCGGAGGGTCTTCCGGCCCCAGTCCAGATCCTTCCGCTT CCGCGACCTCACGTCGGTGGTGGTGAGCGGCGACCGCAGCCTGGCCCTGT CTGTGAACTCTTCCAACAAGGACATCTTCCTCACCGCGGCGGACCGCTCC ACCACAGAGTACATCGTGGACTGCCTCTGTAGGGGGCGGCGGGTGGTGGT GAGCGGCGACCGCAGCCTGGCCCTGTCTGTGAACTCTTCCAACAAGGACA TCTTCCTCACCGCGGCGGACCGCTCCACCACAGAGTACATCGTGGACTGC CTCTGTAGGGGGCGGCGGGATGAGAAGCGGCGGCAGCTTCTCCAGCTAGA TCGGCACCGCCACCAGCGCCAGGACCCGCACGCCTCCTACCATGACGCTC AATGGCAGCAGGTTCAACGGCCCGCGGCCCACCTCCGCCGCACCTCCAGC ACAGACAGCCTCATGGCACTTGCGGCAACCACGCCCCCCTCGTCTGCCAC CCCTGTCACTGCCGCCGCCGCTGCGAGCCAAGGCGGTGGCCGCCCCCGGC ACCACCTGCGCCGGCTCCGGCGAATCCAGAGCCTGAATGACGTCTCAGTG GATGAGAACAGGTGCAGGGGCAGCGGCGATGTCAGCAGCGGGGTTGGCGG CGGCGGCGGCGACGACGACGACGGAGGAGGAGGAGGAGGAGGACGAGGAC ATGAGGGGGAAGGGGAGGGAGCTGGCAAACAGAGTGGAGGAGGGGGGGGA AGGGACGATGATGAGAAGCGGCGGCAGCTTCTCCAGCTAGATCGGCACCG CCACCAGCGCCAGGACCCGCACGCCTCCTACCATGACGCTCAATGGCAGC AGGTTCAACGGCCCGCGGCCCACCTCCGCCGCACCTCCAGCACAGACAGC CTCATGGCACTTGCGGCAACCACGCCCCCCTCGTCTGCCACCCCTGTCAC TGCCGCCGCCGCTGCGAGCCAAGGCGGTGGCCGCCCCCGGCACCACCTGC GCCGGCTCCGGCGAATCCAGAGCCTGAATGACGTCTCAGTGGATGAGAAC AGGTGCAGGGGCAGCGGCGATGTCAGCAGCGGGGTTGGCGGCGGCGGCGG CGACGACGACGACGGAGGAGGAGGAGGAGGAGGACGAGGACATGAGGGGG AAGGGGAGGGAGCTGGCAAACAGAGTGGAGGAGGGGGGGGAAGGGACGAT back to top
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