mRNA_S-ischiensis_contig87.20275.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20275.1
Unique NamemRNA_S-ischiensis_contig87.20275.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig87.20275.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.850e-32
Identity = 75/167 (44.91%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:    1 ENKEVSVSLPWGPQGPGAGEAASFLTAEIATRGLTCLLVLDDAWDRQTMDSLRTLGFHLLVTANDGGQLSPNAWHVSLGGGYTSGGYGGDGPAVGPAEAVAPLSNLGSEVVAVERMDEAEAKEFLQKLAGVTNADWNRLRDSEVVSALVSLCRGLPQALANMGSLLR 501
            ++ EV V LPWG +GP  GE A+FL A +ATRGLTCLLV+DD WDR+++D +R LGFH++VTAN  G L            +T  G G               + LGSEVVAV+RMD+ E K  LQ+ + +   DW  LRD+E V +++ LCR  P AL  +G+ L+
Sbjct:  652 QDDEVEVELPWGTRGPREGEVAAFLAAHLATRGLTCLLVVDDLWDRESLDQVRDLGFHVMVTANSKGLL------------WTQQGAG-------------LAATLGSEVVAVDRMDDDECKLLLQRCSMIETVDWAALRDTEPVKSIIKLCRYGPHALVMVGTTLQ 793
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BLAST of mRNA_S-ischiensis_contig87.20275.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.290e-27
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 1 
Query:   10 EVSVSLPWGPQGPGAGEAASFLTAEIATRGLTCLLVLDDAWDRQTMDSLRTLGFHLLVTANDGGQLSPNAWHVSLGGGYTSGGYGGDGPAVGPAEAVAPLSNLGSEVVAVERMDEAEAKEFLQKLAGVTNADWNRLRDSEV 432
            EV V LPWG +GP  GE A+FL A +ATRGLTCLLV+DD WDR+++D +R LGFH++VTAN  G L            +T  G G               + LGSEVVAV+RMDE E K  LQ+ + +  ADW  LRD+EV
Sbjct: 1127 EVEVELPWGTRGPREGEVAAFLAAHLATRGLTCLLVVDDLWDRESLDQVRDLGFHVMVTANSKGLL------------WTQQGAG-------------LAATLGSEVVAVDRMDEDECKLLLQRCSMIEMADWAALRDTEV 1242
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRB0_ECTSI2.850e-3244.91NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5LG27_9PHAE1.290e-2748.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:451365..454067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size866
Cds size864
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20275.1prot_S-ischiensis_contig87.20275.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 451365..454067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.38501-CDS-S-ischiensis_contig87:451364..4515321622817354.38501-CDS-S-ischiensis_contig87:451364..451532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 451365..451532 -
1695741051.0889142-CDS-S-ischiensis_contig87:451364..4515321695741051.0889142-CDS-S-ischiensis_contig87:451364..451532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 451365..451532 -
1622817354.3998163-CDS-S-ischiensis_contig87:452113..4522421622817354.3998163-CDS-S-ischiensis_contig87:452113..452242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 452114..452242 -
1695741051.1025896-CDS-S-ischiensis_contig87:452113..4522421695741051.1025896-CDS-S-ischiensis_contig87:452113..452242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 452114..452242 -
1622817354.4137375-CDS-S-ischiensis_contig87:452674..4529211622817354.4137375-CDS-S-ischiensis_contig87:452674..452921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 452675..452921 -
1695741051.1144452-CDS-S-ischiensis_contig87:452674..4529211695741051.1144452-CDS-S-ischiensis_contig87:452674..452921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 452675..452921 -
1622817354.4260323-CDS-S-ischiensis_contig87:453206..4534841622817354.4260323-CDS-S-ischiensis_contig87:453206..453484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 453207..453484 -
1695741051.1301296-CDS-S-ischiensis_contig87:453206..4534841695741051.1301296-CDS-S-ischiensis_contig87:453206..453484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 453207..453484 -
1622817354.4412265-CDS-S-ischiensis_contig87:454025..4540671622817354.4412265-CDS-S-ischiensis_contig87:454025..454067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 454026..454067 -
1695741051.1414504-CDS-S-ischiensis_contig87:454025..4540671695741051.1414504-CDS-S-ischiensis_contig87:454025..454067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 454026..454067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20275.1

>prot_S-ischiensis_contig87.20275.1 ID=prot_S-ischiensis_contig87.20275.1|Name=mRNA_S-ischiensis_contig87.20275.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=288bp
ENKEVSVSLPWGPQGPGAGEAASFLTAEIATRGLTCLLVLDDAWDRQTMD
SLRTLGFHLLVTANDGGQLSPNAWHVSLGGGYTSGGYGGDGPAVGPAEAV
APLSNLGSEVVAVERMDEAEAKEFLQKLAGVTNADWNRLRDSEVVSALVS
LCRGLPQALANMGSLLRAGKGARDGGSASGGGVDDDGSQALYSALYDWAE
AHDRLCDALEDGHTHNLARWPPVHQQQGSMSKAATAPATVTPTAVTPTVP
PHNPQGGHPPRPPPPPTPPPPQPARLPNPPSLPPSPVP
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mRNA from alignment at S-ischiensis_contig87:451365..454067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20275.1 ID=mRNA_S-ischiensis_contig87.20275.1|Name=mRNA_S-ischiensis_contig87.20275.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2703bp|location=Sequence derived from alignment at S-ischiensis_contig87:451365..454067- (Schizocladia ischiensis KU_0333)
GAGAACAAGGAAGTGTCGGTTTCACTGCCCTGGGGCCCACAGGTAATGAT
TTCACATAAATTGTAACGAGGTACAATCGGACGTGTGTGCGATTGACTGT
TGGGCCCCACAGGTGCGCTATCGGTGCGTGGGACGTTTTCTTTAGCTATT
GTCGAACTTTTTCCTTTTTTCATGAGTTATTGTTTAATGAACTTTTTAGT
TTTCTTTAGCTATTGTTTGATTTACTACTTTTTCTTTTCTAGCCACGCCC
AACTGCGTGGGCTGATTTTGTTTTGTGGGCTACATCCTTCGAAGTAGTTG
AGTACCTGTCTAAGTTACGTACGGTCCGAAACCAACGGTTGCATGCACCA
GGGTTGGCACTTAGAGGTTAATTCGGGCCTAATTAGCCTTAATTTTAGGT
CAAATTGCCTGTAATTGCCTCTAATTAAGGACCTAAAAGGGCACCACTTT
GGGGTTACGTGCCAGCCCTGGTGCCAAAAACACTGCTTGGTTAAGAGGTT
ATTAGGGGTAGTGAGACCTGCCGTAAAATGAAGGCTGATTAGGCCCTAAG
TAGCGTCTAAATGCCAACCCTGCCCGGGCGCAGGGGCCGGGCGCCGGGGA
GGCGGCGTCCTTCCTGACGGCGGAAATTGCCACCCGGGGGCTGACCTGCC
TTCTGGTGCTAGACGACGCTTGGGACCGCCAGACGATGGACTCGCTCCGC
ACACTGGGCTTCCACCTCCTGGTGACGGCCAACGATGGCGGCCAGCTCTC
GCCCAACGCCTGGCATGTCAGCCTCGGCGGCGGTTACACCAGTGGCGGTT
ACGGCGGCGACGGGCCCGCCGTGGGCCCAGCCGAGGCCGTGGCCCCGCTT
TCTAACCTGGGGTGAGTGAGTGTGTGCCTGCGTGCGTGCCTGCGTGCCTG
CGTACGTGTCCATGTGTTCTCTATGTGTGCATGTGTGTGTGGGGTGCGCG
AGTGTGTGTGGGTGCGTGAGTGCATGGGCCCGTGAGCGCATCTGTGTGCA
TGCGTGCGTGCGTGCGTGCCAGTGTCTTTGCACACGCACGCATCACCGTC
GTAAGTCGCTGTTCCAGTACTCGAGTACTGCATTGACTTACTCGAGTACT
CCTGAAGTGTTGGACCCATCCCCCCTCCGGAAAACGCGGGGAGCAGGTCG
GAGGTGGTCGCGGTCGAGAGGATGGACGAGGCCGAGGCCAAGGAGTTCCT
GCAGAAGCTGGCAGGCGTGACCAACGCCGACTGGAACCGCCTCCGGGACT
CCGAGGTGGTCTCTGCCCTTGTATCCCTGTGCCGGGGCCTCCCCCAGGCC
CTGGCAAACATGGGCTCCCTTCTTCGCGCCGGGAAGGGCGCGCGAGACGG
CGGCTCCGCCTCGGGAGGTGGGGTTGACGACGATGGCTCCCAGGTAGGCT
TTGGGTTTGCTTGGAACTTGGAAGTACTTTGCATGCATGTGCACTTGCGT
AGAGTGTATGTGTGAGTGTGTGAGTGTGTGTGTGTGTGCGTGCCTGTGTG
TGGGCGCTTGTGCGTCGTGTGCCCCTTTCGTTGCCCGGCCATGAGCTGCT
TGGAAGGATTGCGCACGTGCGCGTGCGTGCGTGAGTGCGTGCATGAGTGT
GTGAGTGTGTGCGTGTGCGTGCGTGTGTGCACCCGCTTGTGTATCGTGTG
GCCCCTTGGCGCCTGGAGGTGAGCTGCTCGGAAGTGTTGCGCACTCGTAT
ACACGTGCATGAGCGTCAGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTG
TGTGCCGGTGCGCGTATGCGTGCATCGTGTGACCCCGTCATGCCCGGCCC
GGCCGTTCCTCCGTCGCCCGGGCAGGCTCTGTACAGTGCCTTGTATGACT
GGGCTGAAGCCCACGACCGGCTTTGTGACGCCCTGGAGGACGGCCACACC
CACAACCTGGCCCGCTGGCCGCCCGTGCACCAGCAGCAGGGCTCCATGAG
CAAGGTACAGTAGGTCACACTGCCAGCATGATAATGATGTGATGTGATGT
GATGTGATGCGTGCTTTCAAAGGCTGTACGAGTACTTACTGTACTGTACA
GTAGTTCGGCATCGCACGGCATCGGGCGACTGTCGTGCGATATGATGTGA
TGTGATGTGATGCGATTCGATGATGTGATGTGATATGACGTGTGAAAGCG
CTTCAAAGTGCTCAAACAAGCTGTCGTTTGACATCACGCCACATCACACT
GCAGTGCTTCGAAGTATGGTTTAACACCCCCCCCCCTGCCACACACACCC
CCGGAGCTACTAACCCTCCCTGCAGGCCGAAACCGCCGTGCCCGCCCAAC
CCGCACACGGACAGCTTCACGTCACAGACACGTGGACCTCCACCGTCGCC
TCCGCCTCCGCCTCTGCCTCCGCCTCCGCCTCCGCCTCCTCCTCCTCCTC
CTCCTCCTCCCCCCCCCCCCCCCTTCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTC
CTCCTCCTCCTCCCCCTCCTCCGCCTCCCCCGAAGGCCGCAACCGCTCCA
GCGACAGTTACACCAACAGCAGTCACACCGACGGTACCTCCACACAACCC
CCAAGGGGGCCACCCTCCGAGGCCGCCCCCCCCGCCGACGCCGCCGCCAC
CGCAGCCTGCACGCCTCCCCAACCCGCCCTCTCTCCCCCCGTCGCCCGTC
CCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:451365..454067-

>mRNA_S-ischiensis_contig87.20275.1 ID=mRNA_S-ischiensis_contig87.20275.1|Name=mRNA_S-ischiensis_contig87.20275.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1728bp|location=Sequence derived from alignment at S-ischiensis_contig87:451365..454067- (Schizocladia ischiensis KU_0333)
GAGAACAAGGAAGTGTCGGTTTCACTGCCCTGGGGCCCACAGGAGAACAA
GGAAGTGTCGGTTTCACTGCCCTGGGGCCCACAGGGGCCGGGCGCCGGGG
AGGCGGCGTCCTTCCTGACGGCGGAAATTGCCACCCGGGGGCTGACCTGC
CTTCTGGTGCTAGACGACGCTTGGGACCGCCAGACGATGGACTCGCTCCG
CACACTGGGCTTCCACCTCCTGGTGACGGCCAACGATGGCGGCCAGCTCT
CGCCCAACGCCTGGCATGTCAGCCTCGGCGGCGGTTACACCAGTGGCGGT
TACGGCGGCGACGGGCCCGCCGTGGGCCCAGCCGAGGCCGTGGCCCCGCT
TTCTAACCTGGGGGGCCGGGCGCCGGGGAGGCGGCGTCCTTCCTGACGGC
GGAAATTGCCACCCGGGGGCTGACCTGCCTTCTGGTGCTAGACGACGCTT
GGGACCGCCAGACGATGGACTCGCTCCGCACACTGGGCTTCCACCTCCTG
GTGACGGCCAACGATGGCGGCCAGCTCTCGCCCAACGCCTGGCATGTCAG
CCTCGGCGGCGGTTACACCAGTGGCGGTTACGGCGGCGACGGGCCCGCCG
TGGGCCCAGCCGAGGCCGTGGCCCCGCTTTCTAACCTGGGGTCGGAGGTG
GTCGCGGTCGAGAGGATGGACGAGGCCGAGGCCAAGGAGTTCCTGCAGAA
GCTGGCAGGCGTGACCAACGCCGACTGGAACCGCCTCCGGGACTCCGAGG
TGGTCTCTGCCCTTGTATCCCTGTGCCGGGGCCTCCCCCAGGCCCTGGCA
AACATGGGCTCCCTTCTTCGCGCCGGGAAGGGCGCGCGAGACGGCGGCTC
CGCCTCGGGAGGTGGGGTTGACGACGATGGCTCCCAGGTCGGAGGTGGTC
GCGGTCGAGAGGATGGACGAGGCCGAGGCCAAGGAGTTCCTGCAGAAGCT
GGCAGGCGTGACCAACGCCGACTGGAACCGCCTCCGGGACTCCGAGGTGG
TCTCTGCCCTTGTATCCCTGTGCCGGGGCCTCCCCCAGGCCCTGGCAAAC
ATGGGCTCCCTTCTTCGCGCCGGGAAGGGCGCGCGAGACGGCGGCTCCGC
CTCGGGAGGTGGGGTTGACGACGATGGCTCCCAGGCTCTGTACAGTGCCT
TGTATGACTGGGCTGAAGCCCACGACCGGCTTTGTGACGCCCTGGAGGAC
GGCCACACCCACAACCTGGCCCGCTGGCCGCCCGTGCACCAGCAGCAGGG
CTCCATGAGCAAGGCTCTGTACAGTGCCTTGTATGACTGGGCTGAAGCCC
ACGACCGGCTTTGTGACGCCCTGGAGGACGGCCACACCCACAACCTGGCC
CGCTGGCCGCCCGTGCACCAGCAGCAGGGCTCCATGAGCAAGGCCGCAAC
CGCTCCAGCGACAGTTACACCAACAGCAGTCACACCGACGGTACCTCCAC
ACAACCCCCAAGGGGGCCACCCTCCGAGGCCGCCCCCCCCGCCGACGCCG
CCGCCACCGCAGCCTGCACGCCTCCCCAACCCGCCCTCTCTCCCCCCGTC
GCCCGTCCCGGCCGCAACCGCTCCAGCGACAGTTACACCAACAGCAGTCA
CACCGACGGTACCTCCACACAACCCCCAAGGGGGCCACCCTCCGAGGCCG
CCCCCCCCGCCGACGCCGCCGCCACCGCAGCCTGCACGCCTCCCCAACCC
GCCCTCTCTCCCCCCGTCGCCCGTCCCG
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