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Homology
BLAST of mRNA_S-ischiensis_contig87.20269.1 vs. uniprot
Match: D7FHE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE8_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.210e-9 Identity = 48/132 (36.36%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 70 LDPNQEREAYTSFLDFGLCGRCDRTYRIVDGARH----SMTEEERTGWARERERVREVLENCRRKKAVFRAERRWSAVALE-TEAIKAAETRVEELRRLLEHVVTSCPFCLWRPSESTA*GPLYP*TCFEGG 450
+D + E E FL FGLCGRCDR +RI G +H S E G ++ R + ++ K RA R LE TE ++A V RR L +V SCPFCLW + PL+ C GG
Sbjct: 11 VDGSLEYEERAKFLQFGLCGRCDRVFRISQGWKHVEQKSRHETVVDGESKLRH-LSTLVAKAEMNKTALRAARGAHKDILEATEKLRALRHEVSATRRALAPLVMSCPFCLWNSA------PLFSSPCTGGG 135
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-00_000310.1 |
| Exons | 5 |
| Model size | 864 |
| Cds size | 405 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817354.144442-UTR-S-ischiensis_contig87:419749..420199 | 1622817354.144442-UTR-S-ischiensis_contig87:419749..420199 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 419750..420199 - |
| 1695741050.9013648-UTR-S-ischiensis_contig87:419749..420199 | 1695741050.9013648-UTR-S-ischiensis_contig87:419749..420199 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 419750..420199 - |
| 1622817354.227436-UTR-S-ischiensis_contig87:424609..424618 | 1622817354.227436-UTR-S-ischiensis_contig87:424609..424618 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 424610..424618 - |
| 1695741050.9680166-UTR-S-ischiensis_contig87:424609..424618 | 1695741050.9680166-UTR-S-ischiensis_contig87:424609..424618 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 424610..424618 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817354.1563218-CDS-S-ischiensis_contig87:420199..420347 | 1622817354.1563218-CDS-S-ischiensis_contig87:420199..420347 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 420200..420347 - |
| 1695741050.9151418-CDS-S-ischiensis_contig87:420199..420347 | 1695741050.9151418-CDS-S-ischiensis_contig87:420199..420347 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 420200..420347 - |
| 1622817354.170997-CDS-S-ischiensis_contig87:421816..421899 | 1622817354.170997-CDS-S-ischiensis_contig87:421816..421899 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 421817..421899 - |
| 1695741050.927696-CDS-S-ischiensis_contig87:421816..421899 | 1695741050.927696-CDS-S-ischiensis_contig87:421816..421899 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 421817..421899 - |
| 1622817354.1848822-CDS-S-ischiensis_contig87:423181..423245 | 1622817354.1848822-CDS-S-ischiensis_contig87:423181..423245 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 423182..423245 - |
| 1695741050.9374757-CDS-S-ischiensis_contig87:423181..423245 | 1695741050.9374757-CDS-S-ischiensis_contig87:423181..423245 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 423182..423245 - |
| 1622817354.1998243-CDS-S-ischiensis_contig87:423913..423975 | 1622817354.1998243-CDS-S-ischiensis_contig87:423913..423975 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 423914..423975 - |
| 1695741050.9470997-CDS-S-ischiensis_contig87:423913..423975 | 1695741050.9470997-CDS-S-ischiensis_contig87:423913..423975 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 423914..423975 - |
| 1622817354.2136948-CDS-S-ischiensis_contig87:424561..424609 | 1622817354.2136948-CDS-S-ischiensis_contig87:424561..424609 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 424562..424609 - |
| 1695741050.9572694-CDS-S-ischiensis_contig87:424561..424609 | 1695741050.9572694-CDS-S-ischiensis_contig87:424561..424609 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 424562..424609 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20269.1 >prot_S-ischiensis_contig87.20269.1 ID=prot_S-ischiensis_contig87.20269.1|Name=mRNA_S-ischiensis_contig87.20269.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
MRQGGHLVRVSIPHSESLEALDPNQEREAYTSFLDFGLCGRCDRTYRIVD
GARHSMTEEERTGWARERERVREVLENCRRKKAVFRAERRWSAVALETEA
IKAAETRVEELRRLLEHVVTSCPFCLWRPSESTA* back to topmRNA from alignment at S-ischiensis_contig87:419750..424618- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig87.20269.1 ID=mRNA_S-ischiensis_contig87.20269.1|Name=mRNA_S-ischiensis_contig87.20269.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4869bp|location=Sequence derived from alignment at S-ischiensis_contig87:419750..424618- (Schizocladia ischiensis KU_0333)
GCGGGGGCGATGCGGCAGGGCGGGCACCTGGTGCGTGTGAGCATCCCGCA
CTCTGAGGTAGGCCGCACTGAATACGAGCTGCCACACTGAGGCCTGCATG
TTTTTGCAAGGAAAGCAACGAGCGAGTGGGAAAGAGTTGAACGGTGTCCC
TACTTAGATGACATCACATCACATCGCGTCACATCAATGTTCAGCGAGCC
TCAATTTCACGCGCAGGCGAGATTGCATCTCGTTGATAAATAGTCTTCGG
TTGCTACCGGACTGGCTCGTTCCGGGCCCCATCCCAACACCCAAGTAGGG
TGCGGACCTCACCAGAGGAGTTTAGTTAGCCCTTCTTCCCGCCGCAGGGG
GACTCTTTCTACGATGTGATGTCACTTCATGTGATGTGTACTCCAATGTA
CTGCAGTTTGACAGCCCATCACATGACATCGACGCCCCTCCCAAACGTAC
GGTATGTGATGGGATGTGTGGTGTGTACAAGAGGTATCTTGTAGTTTGAC
ATCGCATCACTCGACCACCTCTCCGAGAAATTTAGCATGCGATATCATGT
GATGTGATTTTTCCTTTGACGTCGTGTGTGCTCTAATGTACTGCACTTTG
ATGTATGACATCACATCAAAGTCTTCCCTGTGTTTATGTACAGTCCCTGG
AGGCGCTGGACCCGAACCAAGAACGGGAGGCCTACACATCCTTTCTGGAT
TTCGGGTGAGCCAGGTCTTCGGTGCCGGGGCCGGGGCAGGTAGCGTTCCG
CAAATCAATTCGCCCCTTTTCTAATAATAGTAACAAAAAAGCACGGCGAC
GAAGTGATGACCCGTCTACCGGTTGTGGGTAGATCTGCGAATCGCCGTTT
CTCATTCCAGGCCATTGCATCCATGCATCAGACGGCCTAATGTACTATTC
TAGGTAGTCACTGCGAGCCCGGCCGCTCGAGACAGTGGGTTCGGGGTTAT
ACTCTGCCAATGAGACAGTGCCGCGTGCCTCATCGGCACCGGCTCTTCAC
GCAGAAACGTATTAGACCCAGTTGCCGATGTGGCTCTGATGTGGATTTGC
AAGAGCCAGGGTCGAAGACATGAGCTTCACTACTACAGTAGACAGTTACC
CCCTCTTACTGCACCGCCATCCGCTTCAACGTCCTCAACATTAAATGTTT
GGCCAAGCTCGCGGCAACCAATGGGCAGCATGGTGGTCCACATCGCCCTC
CGACTACGGCGTGACGCCAAGCGATGTTGGTGCCATATGATGTGATGTGA
TGGGATGTGATGCGATCTGTACTCTATTCCTCGGTGCTGAGCGTAGCTTG
ATGACACATCACATCACATCACATCGCATCGCATCGCATCACGTCGCACC
ACACGTCGCGTGTGGCTTGGCAGGCTCTGCGGGCGGTGTGATAGGACCTA
CCGGATCGTGGACGGGGCCCGGCACAGCATGACAGAGGTGAGCTTCCAAT
GCCGTGGGGATAGCAAGAAGGGGTGAGCTCTTCTCGCACTTGTGCTTCCA
GGGGAGTAGGTGGAACCCTGGTACTGCATATTGGCTTACTCTCACTGTGT
GGCCGAGTGACAAAACTCGGGGTATATGGTCGCACGTGGCATTCCGCTGG
CACAGATTCCCTGTGTGATGAGTTGGATGCGGTATCATGGCGTTGCTCAA
ACCCTTGCTGCAGCGTTCGGGTAAGTTGTATGTTGCTCTCCCTGTTGTTG
CAGCAGTGGGGAAACCTTTCCAGCGCCTCCTCCTCCTCCTCTACCACCAC
CACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCCCCCCCCTCCTGGGGTCCCTTGTCAGAGGGTTACGTCCATCGC
GGCTGCGCTGGGAAACCTATCGTTGATCAATTGCTGCCCTTGTCCCGCTG
GTGTGCCCGATGGACTGCGGCTCCTTTGCATCTCATGACACATGCTTATT
CGCCGCCACTCCCAGTACTCGCAGTGACCGCACAAGGGACCCCCCCCCCC
CCGCCACGCCTTGTTTGTTCGTTTTTGTGCCATGCGAATGGAACAAGAGC
GTCCGGTGAGGTCTCAGTGTTGATTCGATGCGATGCGATGCGATGCTATG
TGGTATCACACGACAGCGAATGAGAGTACCCGTCGCAGTATATCACACCA
CACTGCATCACATCGCAGAAAGATCTTGTGGTGTTCATCGCCGTATATCA
CACTACAACGCATCGCTTCCATGTTGTGCCCTGCGGGCGGAAGAACAGCT
CCCGGCGAGGTCCCATTTTTGGGACGTGGCCCGGAACGTGCTCGCGAGTT
TCAACCCCAAACTACAGTACTTGGTTCGCTGGAAATCCTGCCTCCCAGCT
ACAGTACATTATGCGCTGTGCCTGGTGCCTGAAAACACATACCCCAAACT
ACTGCACGCAGTTCTGGCGAGGTTCCGATTTCGGGAAGGGGGCCGGGGCG
CGCTTGCTGCAATTTTGTTTTCACTCTGGACTGATCTGATCGATGTGAAT
ATGCACTGAATGTCCGTTGAAACTGCGTTGGCTGCAGGGGGAGAGGGCGG
GGGCGGTCGATCGTGTATCCGTTGAACCGATGGAATCGATCAATGTCCTT
CCGTTTGCCTTGCCTGCAGGAGGAGAGGACGGGGTGGGCCAGGGAGAGGG
AACGGGTCCGCGAGGTCCTGGAGAACTGCCGGCGCAAGAAGGCCGTATTC
AGGTCCGCCATGATGAACTTGTTAGTACTGCAGTAGAGCAAGCGTGTGCT
GTAGGATTCCTGAGGGGATGATGGTGCAGTGATCTCTCGAACTAAACCCT
AAACTATTGTTCAATGTGGGTACTATACTAGTGGCCACCCGACGTGGTGA
GTGTACTTACGTCGGACAGGGGACACCTCATCCTGTGCATGCCACCGACT
GTCGGCCCCAGTGTACTACTGGCTGGACTGTGATGTGATGATATGGTGTG
ATTCGATGTCAGCCTACAGTAGATTAGAGGACCGCACACATCACATCACA
TCACATAACAGTATACTGCTGTACTTGCTGGACCGCCGGCCAGCCCCCGC
AGGGTAGCCTTTCGGCCATTTGCCTCACCTGACATGGCGTGTAATCAAAT
ACTGCAGTAGATGCCGCAACAGAAGAGTTGCCGTGGCAGTCGTCCTCCGA
GGGTTAGGTGTCGCTTGGAATGCGTGCCTGGAACACGCGCTCAGGCTGCT
CGAGCTAGGAGAAGATACGCAATCGCCGAAGCACCACTCGAGCACACCGA
ACTACTGTACAGTGCTACTGTACATAGTATGCAAAGTGTATCTACTACAT
AGTACGTAGTATAGCCGTAGTAAATGCACCAGCGCCGACACCCTGCAGAT
CCCGCAGTACAATGCGTGCTGGGCACTACTTTACATGTGTGTGCACTACT
TCGGAAGTGCTACTGTATGTTTGTGCTGTTCACATGTCCCTCTACAAGGC
TGCGGCGAAGATCCCGCTTCTGCAAACTCGACCCACAGTGTCGGTACTCT
CACAGTCTGTACAGCACACTGCACTGCGAGCCGTGGTGCAGTGGCGGTCG
TATGCGGCAAAAGGCGTGGTAGACGGTCCGCGTGAAGAAACTGCTTTGAA
GTACTACAGTGCGTAATACCAGGAAGAACACAGGGCGAGGTGCAGGCTAC
ACCACTAAAGATATTAACAGTGGCCCTTCCTTAGCTCGCCAGGGAAGGGT
TGCGTGGGGAAAGGGAGGGGGATGACTAATAGTAGTATTCGAGTAGGTAC
TGCAACTAGCACACACAGTGTGGTGGTAGCAGTAGCAGTGGCCGTAGCAG
GAGTACAGTAGAGTCGCTGTTTAAGTGCTTGCTGTGCAACAGCAGCACGT
GCTCGAGGAAATGAAGCACTGCAGCAGCAGTAGAAACATGGTGTTTCGTT
CAGCGTTCTCCGTTGCTCACAGCACATAGCCCTCCCAAGTGAGTGGGATG
TGCGGCAGCAATACATAGCCGCAATACAAGTAGCAGCAAATGCCCCGGAA
TTGCACTTGGAAGGAACCTTCCGCGATAACCCTGTCGAATACAACAGCTG
CTCTTGCTCAATAAAAAAAGGCCCGGAAACTGAGTGATGCCGGCCATGAC
ACGTCGTGACATTACGGTTTCCCCGTCTGCCGCGTACTGGGTGCCGTCCT
CCCCAACCAACCGGCGCTCAGGGCGGAGCGCCGCTGGTCGGCCGTGGCCC
TGGAGACAGAGGCCATCAAGGCAGCGGAGACCCGTGTGGAGGAGTTGCGG
CGCCTGCTGGAGCACGTGGTAACCAGCTGTCCCTTCTGCCTGTGGAGACC
GTCGGAGTCGACAGCCTGAGGGCCCTTGTACCCGTGAACTTGTTTCGAGG
GAGGAGAATGGCTCACGTCCTATGACAAGAGCGGGCGGGCGCAAAATTGA
GGACGAGTACTCGGGTACGTGCACATCTCAAGGGGTGCTCTACACTTCAA
GGACGGCTGTGCACTGAACTACTATATCGCGGTCACGACATGCACGTACA
GTACATTAGTAGAGTACTTGAGACTGCCCATCAAGGACTGCAGTACCGTT
GTTCTCGAAAAGGTATCCTTAGTGCTGTACGAGTACTGGGAAGCAATGCC
GTGGGTATTGCCAGGGTTACGGCACAGAGGTGGCACTGCTGTGCTTTAGT
ACAGCTGCAACGGGGTACGCATCACTCATGCTCGAACAAGTCTCTCGAAT
AATTAACCCCACATGGCCGTAACGATCCAAACGATGCAACAACATTTCTG
GGAAGTTCCTCGACAAACA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig87:419750..424618- >mRNA_S-ischiensis_contig87.20269.1 ID=mRNA_S-ischiensis_contig87.20269.1|Name=mRNA_S-ischiensis_contig87.20269.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig87:419750..424618- (Schizocladia ischiensis KU_0333)
ATGCGGCAGGGCGGGCACCTGGTGCGTGTGAGCATCCCGCACTCTGAGAT
GCGGCAGGGCGGGCACCTGGTGCGTGTGAGCATCCCGCACTCTGAGTCCC
TGGAGGCGCTGGACCCGAACCAAGAACGGGAGGCCTACACATCCTTTCTG
GATTTCGGTCCCTGGAGGCGCTGGACCCGAACCAAGAACGGGAGGCCTAC
ACATCCTTTCTGGATTTCGGGCTCTGCGGGCGGTGTGATAGGACCTACCG
GATCGTGGACGGGGCCCGGCACAGCATGACAGAGGCTCTGCGGGCGGTGT
GATAGGACCTACCGGATCGTGGACGGGGCCCGGCACAGCATGACAGAGGA
GGAGAGGACGGGGTGGGCCAGGGAGAGGGAACGGGTCCGCGAGGTCCTGG
AGAACTGCCGGCGCAAGAAGGCCGTATTCAGGAGGAGAGGACGGGGTGGG
CCAGGGAGAGGGAACGGGTCCGCGAGGTCCTGGAGAACTGCCGGCGCAAG
AAGGCCGTATTCAGGGCGGAGCGCCGCTGGTCGGCCGTGGCCCTGGAGAC
AGAGGCCATCAAGGCAGCGGAGACCCGTGTGGAGGAGTTGCGGCGCCTGC
TGGAGCACGTGGTAACCAGCTGTCCCTTCTGCCTGTGGAGACCGTCGGAG
TCGACAGCCTGAGGCGGAGCGCCGCTGGTCGGCCGTGGCCCTGGAGACAG
AGGCCATCAAGGCAGCGGAGACCCGTGTGGAGGAGTTGCGGCGCCTGCTG
GAGCACGTGGTAACCAGCTGTCCCTTCTGCCTGTGGAGACCGTCGGAGTC
GACAGCCTGA back to top
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