mRNA_S-ischiensis_contig87.20249.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20249.1
Unique NamemRNA_S-ischiensis_contig87.20249.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:254960..256037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1080
Cds size903
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.7006335-UTR-S-ischiensis_contig87:254959..2551341622817350.7006335-UTR-S-ischiensis_contig87:254959..255134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 254960..255134 +
1695741048.0340247-UTR-S-ischiensis_contig87:254959..2551341695741048.0340247-UTR-S-ischiensis_contig87:254959..255134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 254960..255134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.7155623-CDS-S-ischiensis_contig87:255134..2560371622817350.7155623-CDS-S-ischiensis_contig87:255134..256037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 255135..256037 +
1695741048.0471013-CDS-S-ischiensis_contig87:255134..2560371695741048.0471013-CDS-S-ischiensis_contig87:255134..256037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 255135..256037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20249.1prot_S-ischiensis_contig87.20249.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 255135..256037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20249.1

>prot_S-ischiensis_contig87.20249.1 ID=prot_S-ischiensis_contig87.20249.1|Name=mRNA_S-ischiensis_contig87.20249.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=301bp
MVLEYGRVYSCTIWYLVLEYFLVASLRARRDSAPVHSTLPHNTENIEQSA
PHAIRPLVIPPVRSSTPVSSCVRRCLAGATSPAQPARRRHRHRRLAPVPL
ARPPLLAAFAAPVLPAATAAAGQRRPVIHAHVRPRRNGPRTRAVPAPALL
RVRAWARGGPILGAPRAGAGAVTWPLGAGAPGRGPRGAAVVRVLAAAAAV
ARGLAAAALVVRVLAATAIVARVLAAALVVRVQAAAALVVRVQAATAIVA
RVLAAAATVARVQAAAALVTRVLAVTVVVGAGSRGPDLAVLAAARGPGPL
Q
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mRNA from alignment at S-ischiensis_contig87:254960..256037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20249.1 ID=mRNA_S-ischiensis_contig87.20249.1|Name=mRNA_S-ischiensis_contig87.20249.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1078bp|location=Sequence derived from alignment at S-ischiensis_contig87:254960..256037+ (Schizocladia ischiensis KU_0333)
AGGACTTCCAAGGTACAGTACATTCATTATCAAGCACTGACAAGCGCACC
ACTGACAGGGTCCGGGTCGTCTCTGCCCGCCTGGAGGGTGGTAGTGAGAC
TCCCTCTGCGGCCGCCTGACTCTCAGGCTCCTGGCAGACATCACCTGGAC
AGTACCTGCTCAAATATGTAACTACATGGTACTCGAGTACGGTAGAGTTT
ACAGCTGTACCATTTGGTACCTAGTACTCGAGTACTTCCTAGTAGCCAGC
CTGAGGGCCCGCCGCGATTCCGCACCAGTACACAGCACGCTACCCCACAA
CACGGAAAACATTGAGCAATCCGCACCGCACGCCATCCGACCACTTGTCA
TACCCCCTGTGCGCTCAAGCACTCCTGTAAGTAGTTGCGTTCGCCGGTGC
CTCGCCGGCGCAACCTCCCCCGCCCAACCTGCGCGCCGCCGCCACCGCCA
CCGCCGCTTAGCACCGGTGCCCCTTGCCCGACCTCCGCTTCTTGCTGCCT
TTGCCGCCCCGGTGCTTCCTGCCGCCACCGCCGCCGCCGGCCAGCGACGC
CCAGTCATCCACGCCCACGTGCGGCCTAGGAGAAACGGGCCCCGAACCCG
AGCCGTCCCCGCCCCAGCGCTCCTCCGGGTGCGGGCCTGGGCCCGGGGCG
GGCCCATCCTGGGGGCCCCCAGGGCCGGTGCAGGCGCGGTGACGTGGCCG
CTGGGGGCTGGGGCTCCTGGCCGCGGGCCCCGCGGCGCCGCTGTCGTGCG
AGTTCTGGCGGCCGCGGCCGCTGTCGCGCGAGGTCTGGCGGCCGCGGCCC
TCGTCGTGCGAGTTCTGGCGGCCACGGCCATTGTCGCCCGAGTTCTGGCG
GCCGCCCTCGTCGTGCGAGTTCAGGCGGCCGCGGCCCTCGTCGTGCGAGT
TCAGGCGGCCACGGCCATTGTCGCCCGAGTTCTGGCGGCCGCGGCCACTG
TCGCGCGAGTTCAGGCGGCCGCGGCCCTCGTGACGCGAGTTCTGGCGGTC
ACGGTCGTCGTCGGGGCCGGCAGTCGGGGGCCGGATCTCGCCGTCCTCGC
TGCCGCTCGAGGCCCGGGCCCTCTTCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:254960..256037+

>mRNA_S-ischiensis_contig87.20249.1 ID=mRNA_S-ischiensis_contig87.20249.1|Name=mRNA_S-ischiensis_contig87.20249.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1806bp|location=Sequence derived from alignment at S-ischiensis_contig87:254960..256037+ (Schizocladia ischiensis KU_0333)
ATGGTACTCGAGTACGGTAGAGTTTACAGCTGTACCATTTGGTACCTAGT
ACTCGAGTACTTCCTAGTAGCCAGCCTGAGGGCCCGCCGCGATTCCGCAC
CAGTACACAGCACGCTACCCCACAACACGGAAAACATTGAGCAATCCGCA
CCGCACGCCATCCGACCACTTGTCATACCCCCTGTGCGCTCAAGCACTCC
TGTAAGTAGTTGCGTTCGCCGGTGCCTCGCCGGCGCAACCTCCCCCGCCC
AACCTGCGCGCCGCCGCCACCGCCACCGCCGCTTAGCACCGGTGCCCCTT
GCCCGACCTCCGCTTCTTGCTGCCTTTGCCGCCCCGGTGCTTCCTGCCGC
CACCGCCGCCGCCGGCCAGCGACGCCCAGTCATCCACGCCCACGTGCGGC
CTAGGAGAAACGGGCCCCGAACCCGAGCCGTCCCCGCCCCAGCGCTCCTC
CGGGTGCGGGCCTGGGCCCGGGGCGGGCCCATCCTGGGGGCCCCCAGGGC
CGGTGCAGGCGCGGTGACGTGGCCGCTGGGGGCTGGGGCTCCTGGCCGCG
GGCCCCGCGGCGCCGCTGTCGTGCGAGTTCTGGCGGCCGCGGCCGCTGTC
GCGCGAGGTCTGGCGGCCGCGGCCCTCGTCGTGCGAGTTCTGGCGGCCAC
GGCCATTGTCGCCCGAGTTCTGGCGGCCGCCCTCGTCGTGCGAGTTCAGG
CGGCCGCGGCCCTCGTCGTGCGAGTTCAGGCGGCCACGGCCATTGTCGCC
CGAGTTCTGGCGGCCGCGGCCACTGTCGCGCGAGTTCAGGCGGCCGCGGC
CCTCGTGACGCGAGTTCTGGCGGTCACGGTCGTCGTCGGGGCCGGCAGTC
GGGGGCCGGATCTCGCCGTCCTCGCTGCCGCTCGAGGCCCGGGCCCTCTT
CAGATGGTACTCGAGTACGGTAGAGTTTACAGCTGTACCATTTGGTACCT
AGTACTCGAGTACTTCCTAGTAGCCAGCCTGAGGGCCCGCCGCGATTCCG
CACCAGTACACAGCACGCTACCCCACAACACGGAAAACATTGAGCAATCC
GCACCGCACGCCATCCGACCACTTGTCATACCCCCTGTGCGCTCAAGCAC
TCCTGTAAGTAGTTGCGTTCGCCGGTGCCTCGCCGGCGCAACCTCCCCCG
CCCAACCTGCGCGCCGCCGCCACCGCCACCGCCGCTTAGCACCGGTGCCC
CTTGCCCGACCTCCGCTTCTTGCTGCCTTTGCCGCCCCGGTGCTTCCTGC
CGCCACCGCCGCCGCCGGCCAGCGACGCCCAGTCATCCACGCCCACGTGC
GGCCTAGGAGAAACGGGCCCCGAACCCGAGCCGTCCCCGCCCCAGCGCTC
CTCCGGGTGCGGGCCTGGGCCCGGGGCGGGCCCATCCTGGGGGCCCCCAG
GGCCGGTGCAGGCGCGGTGACGTGGCCGCTGGGGGCTGGGGCTCCTGGCC
GCGGGCCCCGCGGCGCCGCTGTCGTGCGAGTTCTGGCGGCCGCGGCCGCT
GTCGCGCGAGGTCTGGCGGCCGCGGCCCTCGTCGTGCGAGTTCTGGCGGC
CACGGCCATTGTCGCCCGAGTTCTGGCGGCCGCCCTCGTCGTGCGAGTTC
AGGCGGCCGCGGCCCTCGTCGTGCGAGTTCAGGCGGCCACGGCCATTGTC
GCCCGAGTTCTGGCGGCCGCGGCCACTGTCGCGCGAGTTCAGGCGGCCGC
GGCCCTCGTGACGCGAGTTCTGGCGGTCACGGTCGTCGTCGGGGCCGGCA
GTCGGGGGCCGGATCTCGCCGTCCTCGCTGCCGCTCGAGGCCCGGGCCCT
CTTCAG
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