mRNA_S-ischiensis_contig85.20136.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.830e-23 Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD L+ P LV + L F +KDLG+A +LG I ++R +RTL L Q RY ++E FDM +N TP ++S + + T E +S Y+ LVGSL++LA TRPDLAFP+ L+ + P PAH A K
Sbjct: 1671 LYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTP--FESSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAK 1816
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.580e-23 Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD L+ P LV + L F +KDLG+A +LG I ++R +RTL L Q RY ++E FDM +N TP ++S + + T E +S Y+ LVGSL++LA TRPDLAFP+ L+ + P PAH A K
Sbjct: 1376 LYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTP--FESSKTLSKSQCATTPEDVSFMASKPYRSLVGSLMYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAK 1521
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438HB19_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB19_VITVI) HSP 1 Score: 104 bits (259), Expect = 5.850e-23 Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGKTF 474
+YVDD LVA ++ +EQV ++LKAEF++KDLG A +LGM I +DR KR L+L Q Y +L F+M STP G + S+ + T E ++ Y +VGS+++ C+RPDLA+ V M++ M P +H A K F
Sbjct: 29 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTMSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKSHWQAVKWF 176
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438BW97_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BW97_VITVI) HSP 1 Score: 101 bits (252), Expect = 4.910e-22 Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD LVA ++ +EQV ++LKAEF++KDLG A +LGM I +DR KR L+L Q Y +L F+M STP G + S+ + T E ++ Y +VGS+++ C+RPDLA+ V M++ M P H A K
Sbjct: 29 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 174
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI) HSP 1 Score: 101 bits (252), Expect = 5.320e-22 Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD LVA ++ +EQV ++LKAEF++KDLG A +LGM I +DR KR L+L Q Y +L F+M STP G + S+ + T E ++ Y +VGS+++ C+RPDLA+ V M++ M P H A K
Sbjct: 931 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 1076
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438DYU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DYU4_VITVI) HSP 1 Score: 101 bits (252), Expect = 5.350e-22 Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD LVA ++ +EQV ++LKAEF++KDLG A +LGM I +DR KR L+L Q Y +L F+M STP G + S+ + T E ++ Y +VGS+++ C+RPDLA+ V M++ M P H A K
Sbjct: 745 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 890
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.980e-22 Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD L+ G D++LV+Q L F++ D+G+ +LG+ + +D E+ TL + Q+ Y +LE F M+ AN STPG S + ++ L D+ Y+ + GS+L+LA+CTR DL++ + L+ A P +M A K
Sbjct: 55 VYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQ-----PQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 197
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0X457_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X457_9STRA) HSP 1 Score: 100 bits (250), Expect = 9.410e-22 Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 13 HPDGIYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
H D +YVDD L+ P LV + L F++KDLGK +LG I ++R RTL L Q RY ++ FDM ++ TP ++ + + + +T + ++ Y+ LVGSL++LA TRPDLAFP+ L+ ++ P PAH A K
Sbjct: 460 HKDRLYVDDLLIIAPTTSLVSSMKLSLFDRFQMKDLGKTRDILGWQIERNRSARTLFLHQTRYCETVVTRFDMASSHPVHTP--FECTTKLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAK 609
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438CPX9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CPX9_VITVI) HSP 1 Score: 100 bits (250), Expect = 9.720e-22 Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGKTF 474
+YVDD LVA ++ +EQV ++LKA+F++KDLG A +LGM I +DR KR L+L Q Y +L F+M STP G + S+ + T E ++ Y +VGS+++ C+RPDLA+ V M++ M P H A K F
Sbjct: 842 LYVDDMLVACKEKRHLEQVKEMLKAKFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNDVKTVSTPLGQHFRLSITQAPKT---HEEKRFMEKIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPRKPHWQAVKWF 989
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.600e-21 Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
Query: 25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
+YVDD L+ G D++LV+Q L F++ D+G+ +LG+ + +D E+ TL + Q+ Y +LE F M+ AN STPG S + ++ L D+ Y+ + GS+L+LA+CTR DL++ + L+ A P +M A K
Sbjct: 130 VYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQ-----PQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 272 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig85.20136.1 >prot_S-ischiensis_contig85.20136.1 ID=prot_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp QDSGHPDGIYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHback to top mRNA from alignment at S-ischiensis_contig85:281054..281535+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig85.20136.1 ID=mRNA_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=482bp|location=Sequence derived from alignment at S-ischiensis_contig85:281054..281535+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig85:281054..281535+ >mRNA_S-ischiensis_contig85.20136.1 ID=mRNA_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig85:281054..281535+ (Schizocladia ischiensis KU_0333)back to top |