mRNA_S-ischiensis_contig85.20136.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20136.1
Unique NamemRNA_S-ischiensis_contig85.20136.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.830e-23
Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD L+  P   LV  +   L   F +KDLG+A  +LG  I ++R +RTL L Q RY   ++E FDM  +N   TP  ++S   +  +    T E +S      Y+ LVGSL++LA  TRPDLAFP+  L+  +  P PAH  A K
Sbjct: 1671 LYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTP--FESSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAK 1816          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.580e-23
Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD L+  P   LV  +   L   F +KDLG+A  +LG  I ++R +RTL L Q RY   ++E FDM  +N   TP  ++S   +  +    T E +S      Y+ LVGSL++LA  TRPDLAFP+  L+  +  P PAH  A K
Sbjct: 1376 LYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTP--FESSKTLSKSQCATTPEDVSFMASKPYRSLVGSLMYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAK 1521          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438HB19_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB19_VITVI)

HSP 1 Score: 104 bits (259), Expect = 5.850e-23
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGKTF 474
            +YVDD LVA  ++  +EQV ++LKAEF++KDLG A  +LGM I +DR KR L+L Q  Y   +L  F+M      STP G +   S+ +   T    E     ++  Y  +VGS+++   C+RPDLA+ V M++  M  P  +H  A K F
Sbjct:   29 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTMSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKSHWQAVKWF 176          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438BW97_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BW97_VITVI)

HSP 1 Score: 101 bits (252), Expect = 4.910e-22
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD LVA  ++  +EQV ++LKAEF++KDLG A  +LGM I +DR KR L+L Q  Y   +L  F+M      STP G +   S+ +   T    E     ++  Y  +VGS+++   C+RPDLA+ V M++  M  P   H  A K
Sbjct:   29 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 174          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 101 bits (252), Expect = 5.320e-22
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD LVA  ++  +EQV ++LKAEF++KDLG A  +LGM I +DR KR L+L Q  Y   +L  F+M      STP G +   S+ +   T    E     ++  Y  +VGS+++   C+RPDLA+ V M++  M  P   H  A K
Sbjct:  931 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 1076          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438DYU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DYU4_VITVI)

HSP 1 Score: 101 bits (252), Expect = 5.350e-22
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD LVA  ++  +EQV ++LKAEF++KDLG A  +LGM I +DR KR L+L Q  Y   +L  F+M      STP G +   S+ +   T    E     ++  Y  +VGS+++   C+RPDLA+ V M++  M  P   H  A K
Sbjct:  745 LYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPET---HEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVK 890          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.980e-22
Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD L+ G D++LV+Q    L   F++ D+G+   +LG+ + +D E+ TL + Q+ Y   +LE F M+ AN  STPG     S  +       ++ L   D+  Y+ + GS+L+LA+CTR DL++  + L+ A   P   +M A K
Sbjct:   55 VYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQ-----PQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 197          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6G0X457_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X457_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.410e-22
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   13 HPDGIYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            H D +YVDD L+  P   LV  +   L   F++KDLGK   +LG  I ++R  RTL L Q RY   ++  FDM  ++   TP  ++  + +  +   +T + ++      Y+ LVGSL++LA  TRPDLAFP+  L+  ++ P PAH  A K
Sbjct:  460 HKDRLYVDDLLIIAPTTSLVSSMKLSLFDRFQMKDLGKTRDILGWQIERNRSARTLFLHQTRYCETVVTRFDMASSHPVHTP--FECTTKLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAK 609          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A438CPX9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CPX9_VITVI)

HSP 1 Score: 100 bits (250), Expect = 9.720e-22
Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTP-GDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGKTF 474
            +YVDD LVA  ++  +EQV ++LKA+F++KDLG A  +LGM I +DR KR L+L Q  Y   +L  F+M      STP G +   S+ +   T    E     ++  Y  +VGS+++   C+RPDLA+ V M++  M  P   H  A K F
Sbjct:  842 LYVDDMLVACKEKRHLEQVKEMLKAKFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNDVKTVSTPLGQHFRLSITQAPKT---HEEKRFMEKIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPRKPHWQAVKWF 989          
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.600e-21
Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   25 IYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMHITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANTGATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPAHMAAGK 468
            +YVDD L+ G D++LV+Q    L   F++ D+G+   +LG+ + +D E+ TL + Q+ Y   +LE F M+ AN  STPG     S  +       ++ L   D+  Y+ + GS+L+LA+CTR DL++  + L+ A   P   +M A K
Sbjct:  130 VYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQ-----PQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAK 272          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W780_9STRA1.830e-2340.54Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0X7I6_9STRA4.580e-2340.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A438HB19_VITVI5.850e-2339.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BW97_VITVI4.910e-2239.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FEW0_VITVI5.320e-2239.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DYU4_VITVI5.350e-2239.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KAK0_9PHAE6.980e-2235.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0X457_9STRA9.410e-2237.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438CPX9_VITVI9.720e-2239.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KGS8_9PHAE2.600e-2135.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:281054..281535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score91.7
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog65672.G4TZM0
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.0947442-CDS-S-ischiensis_contig85:281053..2815331622817342.0947442-CDS-S-ischiensis_contig85:281053..281533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 281054..281533 +
1695741041.525289-CDS-S-ischiensis_contig85:281053..2815331695741041.525289-CDS-S-ischiensis_contig85:281053..281533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 281054..281533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20136.1prot_S-ischiensis_contig85.20136.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 281054..281533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20136.1

>prot_S-ischiensis_contig85.20136.1 ID=prot_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
QDSGHPDGIYVDDFLVAGPDEELVEQVIDLLKAEFKIKDLGKAVYLLGMH
ITQDREKRTLQLGQKRYALDILECFDMERANASSTPGDYKSFSVIRDANT
GATEEGLSAADQHTYKELVGSLLFLARCTRPDLAFPVMMLALAMQTPVPA
HMAAGKTFEE
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mRNA from alignment at S-ischiensis_contig85:281054..281535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20136.1 ID=mRNA_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=482bp|location=Sequence derived from alignment at S-ischiensis_contig85:281054..281535+ (Schizocladia ischiensis KU_0333)
CAAGACTCTGGTCATCCTGACGGTATATATGTTGACGACTTTCTGGTTGC TGGACCGGACGAGGAGCTGGTGGAGCAGGTGATCGACCTGCTTAAGGCGG AGTTCAAGATCAAGGATCTGGGCAAGGCGGTCTACCTCCTGGGGATGCAC ATCACGCAAGACCGGGAGAAGCGCACACTGCAGCTTGGGCAAAAGCGCTA CGCCTTGGACATCCTGGAGTGCTTTGACATGGAACGAGCAAACGCCTCCA GCACTCCGGGAGACTACAAGAGCTTCTCCGTCATCCGCGATGCCAACACG GGAGCCACGGAAGAGGGCCTGTCAGCAGCTGACCAGCATACATACAAGGA GCTGGTGGGGAGTCTTCTCTTCTTGGCCCGCTGCACTCGTCCGGACCTGG CGTTCCCTGTCATGATGTTGGCGCTGGCAATGCAGACTCCAGTCCCGGCC CACATGGCAGCAGGCAAGACTTTTGAAGAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:281054..281535+

>mRNA_S-ischiensis_contig85.20136.1 ID=mRNA_S-ischiensis_contig85.20136.1|Name=mRNA_S-ischiensis_contig85.20136.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig85:281054..281535+ (Schizocladia ischiensis KU_0333)
CAAGACTCTGGTCATCCTGACGGTATATATGTTGACGACTTTCTGGTTGC
TGGACCGGACGAGGAGCTGGTGGAGCAGGTGATCGACCTGCTTAAGGCGG
AGTTCAAGATCAAGGATCTGGGCAAGGCGGTCTACCTCCTGGGGATGCAC
ATCACGCAAGACCGGGAGAAGCGCACACTGCAGCTTGGGCAAAAGCGCTA
CGCCTTGGACATCCTGGAGTGCTTTGACATGGAACGAGCAAACGCCTCCA
GCACTCCGGGAGACTACAAGAGCTTCTCCGTCATCCGCGATGCCAACACG
GGAGCCACGGAAGAGGGCCTGTCAGCAGCTGACCAGCATACATACAAGGA
GCTGGTGGGGAGTCTTCTCTTCTTGGCCCGCTGCACTCGTCCGGACCTGG
CGTTCCCTGTCATGATGTTGGCGCTGGCAATGCAGACTCCAGTCCCGGCC
CACATGGCAGCAGGCAAGACTTTTGAAGAGCAAGACTCTGGTCATCCTGA
CGGTATATATGTTGACGACTTTCTGGTTGCTGGACCGGACGAGGAGCTGG
TGGAGCAGGTGATCGACCTGCTTAAGGCGGAGTTCAAGATCAAGGATCTG
GGCAAGGCGGTCTACCTCCTGGGGATGCACATCACGCAAGACCGGGAGAA
GCGCACACTGCAGCTTGGGCAAAAGCGCTACGCCTTGGACATCCTGGAGT
GCTTTGACATGGAACGAGCAAACGCCTCCAGCACTCCGGGAGACTACAAG
AGCTTCTCCGTCATCCGCGATGCCAACACGGGAGCCACGGAAGAGGGCCT
GTCAGCAGCTGACCAGCATACATACAAGGAGCTGGTGGGGAGTCTTCTCT
TCTTGGCCCGCTGCACTCGTCCGGACCTGGCGTTCCCTGTCATGATGTTG
GCGCTGGCAATGCAGACTCCAGTCCCGGCCCACATGGCAGCAGGCAAGAC
TTTTGAAGAG
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