mRNA_S-ischiensis_contig84.20104.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20104.1
Unique NamemRNA_S-ischiensis_contig84.20104.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20104.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.950e-38
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:   40 AAGSHTVAVQLSGYRWLPQVCADRLGTRATPLRALLGRRDQRLVCLDPRLAAALALVTEVHHLNGGRQVTLRSVFRLQNCTDH 288
            A GSHTVAVQ+SGYRW+P+VCAD LGTRA PLRALLGR D R VC DP LAAAL+LV +VHHLNGGRQVTLRSVFRLQNCTDH
Sbjct: 4359 AGGSHTVAVQVSGYRWMPEVCADNLGTRAIPLRALLGRVDARRVCPDPGLAAALSLVADVHHLNGGRQVTLRSVFRLQNCTDH 4441
[Close]
BLAST of mRNA_S-ischiensis_contig84.20104.1 vs. uniprot
Match: A0A6H5L016_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L016_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.160e-33
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:   25 PTAAAAAGSHTVAVQLSGYRWLPQVCADRLGTRATPLRALLGRRDQRLVCLDPRLAAALALVTEVHHLNGGRQVTLRSVFRLQ 273
            P    A GSHTVAVQ+SGYRW+P+VCAD LGTRA PLRALLGR D R VC DP +AAAL+LV +VHHLNGGRQVTLRSVFRLQ
Sbjct: 1078 PKGQRAGGSHTVAVQVSGYRWMPEVCADNLGTRAIPLRALLGRVDARRVCPDPGVAAALSLVADVHHLNGGRQVTLRSVFRLQ 1160
[Close]
BLAST of mRNA_S-ischiensis_contig84.20104.1 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-9
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   49 SHTVAVQLSGYRWLPQVCADRLGTRATPLRALLGRRDQRLVCLDPRLAAALALVTEVHHLNGGRQVTLRSVFRLQNCTDHNL 294
            S  + VQ   YRWL  V AD LG +   L  L G      +  D ++  A  LV+EV  +NG RQ+TLRSVFR++NCT H +
Sbjct: 2667 SWIICVQPKDYRWLSCVSADALGLQFQSLWPLHGLPHAERLLEDWKIRNAFKLVSEVRVVNGCRQLTLRSVFRVKNCTKHKI 2748
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI5.950e-3883.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L016_9PHAE4.160e-3377.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TRD9_9STRA1.370e-943.90Vacuolar protein sorting-associated protein 13 fam... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:667650..668239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.0417445-CDS-S-ischiensis_contig84:667649..6677451622817339.0417445-CDS-S-ischiensis_contig84:667649..667745Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 667650..667745 +
1695741039.367848-CDS-S-ischiensis_contig84:667649..6677451695741039.367848-CDS-S-ischiensis_contig84:667649..667745Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 667650..667745 +
1622817339.0550137-CDS-S-ischiensis_contig84:668036..6682371622817339.0550137-CDS-S-ischiensis_contig84:668036..668237Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 668037..668237 +
1695741039.3810713-CDS-S-ischiensis_contig84:668036..6682371695741039.3810713-CDS-S-ischiensis_contig84:668036..668237Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 668037..668237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20104.1prot_S-ischiensis_contig84.20104.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 667650..668237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20104.1

>prot_S-ischiensis_contig84.20104.1 ID=prot_S-ischiensis_contig84.20104.1|Name=mRNA_S-ischiensis_contig84.20104.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp
RRRQLEVQPTAAAAAGSHTVAVQLSGYRWLPQVCADRLGTRATPLRALLG
RRDQRLVCLDPRLAAALALVTEVHHLNGGRQVTLRSVFRLQNCTDHNLA
back to top

mRNA from alignment at S-ischiensis_contig84:667650..668239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20104.1 ID=mRNA_S-ischiensis_contig84.20104.1|Name=mRNA_S-ischiensis_contig84.20104.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=590bp|location=Sequence derived from alignment at S-ischiensis_contig84:667650..668239+ (Schizocladia ischiensis KU_0333)
AGGCGGAGGCAGCTGGAGGTGCAGCCGACGGCGGCCGCGGCGGCGGGGTC
GCACACGGTGGCGGTGCAGCTGTCGGGGTACCGGTGGCTGCCGCAGGTGG
GCAGTGATGGAAAATTAAGCAAATCAGCCTATTTATCGACAGTACTAATC
CAAGTACTTCGTATGCATCTATCGACAGTCGACAGTCGATAGTTTGACCC
ACGCTAAATCCAAGTATTAACAGGAACAACACGGGGCGAGGTGCGGGCCA
CGTCACGAGAGACCTCAGCAGTGGCCCTTCCGTATAGCTCGCCAAAGGAA
AGAGTTAGTAATGTCGCCCACAAAATCAGTCGAGCCCGATGACTACTTAT
CTACCGATTGATATATCCCATCGCTGCTCCCCTGCAGGTGTGCGCGGACC
GGCTGGGCACACGGGCCACCCCCTTGCGCGCCCTTCTGGGGCGGCGGGAC
CAGCGCCTGGTCTGCCTGGACCCACGCCTCGCCGCCGCTCTTGCCCTGGT
CACCGAGGTGCACCACCTCAACGGCGGCCGCCAGGTCACCCTCCGCTCCG
TCTTCCGCCTGCAGAACTGCACCGACCACAACCTGGCGCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig84:667650..668239+

>mRNA_S-ischiensis_contig84.20104.1 ID=mRNA_S-ischiensis_contig84.20104.1|Name=mRNA_S-ischiensis_contig84.20104.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig84:667650..668239+ (Schizocladia ischiensis KU_0333)
AGGCGGAGGCAGCTGGAGGTGCAGCCGACGGCGGCCGCGGCGGCGGGGTC
GCACACGGTGGCGGTGCAGCTGTCGGGGTACCGGTGGCTGCCGCAGAGGC
GGAGGCAGCTGGAGGTGCAGCCGACGGCGGCCGCGGCGGCGGGGTCGCAC
ACGGTGGCGGTGCAGCTGTCGGGGTACCGGTGGCTGCCGCAGGTGTGCGC
GGACCGGCTGGGCACACGGGCCACCCCCTTGCGCGCCCTTCTGGGGCGGC
GGGACCAGCGCCTGGTCTGCCTGGACCCACGCCTCGCCGCCGCTCTTGCC
CTGGTCACCGAGGTGCACCACCTCAACGGCGGCCGCCAGGTCACCCTCCG
CTCCGTCTTCCGCCTGCAGAACTGCACCGACCACAACCTGGCGGTGTGCG
CGGACCGGCTGGGCACACGGGCCACCCCCTTGCGCGCCCTTCTGGGGCGG
CGGGACCAGCGCCTGGTCTGCCTGGACCCACGCCTCGCCGCCGCTCTTGC
CCTGGTCACCGAGGTGCACCACCTCAACGGCGGCCGCCAGGTCACCCTCC
GCTCCGTCTTCCGCCTGCAGAACTGCACCGACCACAACCTGGCG
back to top