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Homology
BLAST of mRNA_S-ischiensis_contig83.19948.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 102 bits (253), Expect = 8.690e-20 Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query: 3 GGRTLAVHFRSGDVF---ASAHTNKHYGQPPLSFYMEALARESWAEVTLVTDGRDKNAMNPTYSVLQEHAKRHLFDFPVQTVQHGDLVSDIRELICADAIVAPRTSSLNEFFLFHSRADTMVVPYECNEMTVR---------------LLLRHRPHVKVWGMATQRG---YSVFEHWRNDAEQRLEMMSWVG-DGLVLCS 536
G +L H RSGD+F H + +GQPPL +Y+ LA + W VT +T + A+NPT+ L+ A + V + L++D++E++CADA+ R SS++ HSRA T VP C R LLL + +V+G+ ++ YSV+++W + Q LEM ++ G GL C+
Sbjct: 113 GAGSLVAHIRSGDIFNPDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSR-SSMSFLTFAHSRATTFFVPTPCGNGGFRRMKDVPVKATFDNTTLLLLEKRESEVFGVDWRQNGSDYSVYKNWLDSPHQLLEMTTYKGIKGLQKCT 311
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2352 |
| Cds size | 459 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817326.526098-UTR-S-ischiensis_contig83:85875..87670 | 1622817326.526098-UTR-S-ischiensis_contig83:85875..87670 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig83 85876..87670 - |
| 1695741028.6467993-UTR-S-ischiensis_contig83:85875..87670 | 1695741028.6467993-UTR-S-ischiensis_contig83:85875..87670 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig83 85876..87670 - |
| 1622817326.5873337-UTR-S-ischiensis_contig83:89637..89735 | 1622817326.5873337-UTR-S-ischiensis_contig83:89637..89735 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig83 89638..89735 - |
| 1695741028.7056718-UTR-S-ischiensis_contig83:89637..89735 | 1695741028.7056718-UTR-S-ischiensis_contig83:89637..89735 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig83 89638..89735 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817326.5380719-CDS-S-ischiensis_contig83:87670..87835 | 1622817326.5380719-CDS-S-ischiensis_contig83:87670..87835 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 87671..87835 - |
| 1695741028.6569123-CDS-S-ischiensis_contig83:87670..87835 | 1695741028.6569123-CDS-S-ischiensis_contig83:87670..87835 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 87671..87835 - |
| 1622817326.5498483-CDS-S-ischiensis_contig83:88068..88218 | 1622817326.5498483-CDS-S-ischiensis_contig83:88068..88218 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 88069..88218 - |
| 1695741028.6692317-CDS-S-ischiensis_contig83:88068..88218 | 1695741028.6692317-CDS-S-ischiensis_contig83:88068..88218 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 88069..88218 - |
| 1622817326.5613737-CDS-S-ischiensis_contig83:88921..89032 | 1622817326.5613737-CDS-S-ischiensis_contig83:88921..89032 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 88922..89032 - |
| 1695741028.682731-CDS-S-ischiensis_contig83:88921..89032 | 1695741028.682731-CDS-S-ischiensis_contig83:88921..89032 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 88922..89032 - |
| 1622817326.572454-CDS-S-ischiensis_contig83:89604..89637 | 1622817326.572454-CDS-S-ischiensis_contig83:89604..89637 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 89605..89637 - |
| 1695741028.6946833-CDS-S-ischiensis_contig83:89604..89637 | 1695741028.6946833-CDS-S-ischiensis_contig83:89604..89637 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig83 89605..89637 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig83.19948.1 >prot_S-ischiensis_contig83.19948.1 ID=prot_S-ischiensis_contig83.19948.1|Name=mRNA_S-ischiensis_contig83.19948.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
MEALARESWAEVTLVTDGRDKNAMNPTYSVLQEHAKRHLFDFPVQTVQHG
DLVSDIRELICADAIVAPRTSSLNEFFLFHSRADTMVVPYECNEMTVRLL
LRHRPHVKVWGMATQRGYSVFEHWRNDAEQRLEMMSWVGDGLVLCSNQSA
PI* back to topmRNA from alignment at S-ischiensis_contig83:85876..89735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig83.19948.1 ID=mRNA_S-ischiensis_contig83.19948.1|Name=mRNA_S-ischiensis_contig83.19948.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3860bp|location=Sequence derived from alignment at S-ischiensis_contig83:85876..89735- (Schizocladia ischiensis KU_0333)
GGGGCGGGAGGACGCTTGCGGTGCATTTCCGGTCGGGGGATGTCTTTGCG
TCAGCCCACACCAACAAGCACTACGGGCAGCCGCCCCTCAGCTTCTACAT
GGAGGCCCTGGCCCGGGAAAGCTGGGCGGAGGTGCGTGCGTGCGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGAGGCCCTGGCCCTGGAATATTTGGCTGA
GGTGTGTGTGTGTGTGTGTGTTCATGTGCGTGTGTGCGGGTATGCGTGTT
TGTGTGTATGTGTGTGTGTACACGTGTGTGTATTCAAGCGTGTGAGTACA
TGTGGTGTACTCGATGACATTTTTTGTGCGTGTGTGTGTCTTTGTGCAGT
GCCGCGGTGCGGTGGGCATGCGCCAGGTGTTCGTTCCATCGTCACGGGGT
GACCGATTGACTTCCTGCAATATCCCTGTCGGCCCGTGCTTTTCATGCAA
GACTACGTACGACAGTAGTACTCGAAGCAGTTGTTTTAAAGATGACAGGA
CATGACATTTCTACAATGGCGAGCTAAGGAAGGGCCGATGTTGGGGTCTT
TAGTGACGTGGCCTGCACCTTGCCCTGTGTTGTTCCTGTTAATACTACAA
TGTGATGCTTTCGACAGCTTTTGTGTTCGCCCGGACGCTGCCGAAACGAA
CTTGCTATAGCTGACGTGGCCGCCGTCTTTTGCTTTTTCCCCTGCCACGT
AAGGTGACCTTGGTGACGGACGGCAGGGACAAGAACGCCATGAACCCCAC
GTACAGCGTCCTTCAGGAGCACGCCAAGCGGCACCTGTTCGACTTCCCGG
TACAAACCGTTCAGGTGCCGTGTGCTGAGATGGCATCGCAAGCAATATGC
TAAGGGCTTTCATGTGTGCTTCAACGTACCGTATGATTGTACTTGTACAA
GCGTTTGGTGCCACTGTACTGTACCTACTTTGAAGGACTACAGTAGTACG
AGTACATACTTCCGGAGTAGTGCTTAGCGTATTATTGAAGTATTGTCTTC
TGCAAAGTGCCTGGAAATATCGCGAGTACTTGGAAGTACTTGGATGTCCT
GCGTGTAGTGCACTAGTACAGCAGAGTGCAGTAGTAGTGCTTCGGAGGTA
TGTTGTGCATCTGTGGTGCATGTCACTCGCCGTGTGAGAACAACGACAGC
CACTGGCCCGGCAACCCGAGGCCAGTGCTTGAACTGGCACCGAGCGACAC
GGCCCCACGACATGCACACACAGACACACACACATAGCCTGCGTACCTAT
GTGGTACGCGTTTGATCGGCGGCAAAATTCTCGCCATATATGGCGAGAAT
ATTGGCGCTGGCGTTAGGTACCACTCTGGTAAGCCAAGTGAGTTGTAGTA
GAGTACTTTGAAGTATGTCCCGGTGCAAGTACTAAAGGTGCTCCACGCGC
GCCAAACTTACGCTCTGCCCAACGCACTCCCCCACGATCGACCCACGCTT
GGCTTGCGCTATTCCGGCCGCCTCCTGCCCCGGGCGGGGGTCCCACCTCT
TTCTTGTGCGCATGCAGCATGGCGATCTGGTTTCTGACATACGGGAGCTG
ATCTGCGCGGACGCCATCGTGGCACCCCGGACCTCCTCCCTCAACGAGTT
CTTCCTCTTCCATAGCCGAGCTGACACCATGGTCGTGCCGTACGAGTGCA
ATGAGATGACCGTCAGGGTGAGCGAGCGAGCGAACGAGTGGGTGCATGTG
TGTGTGTGTGCATGCATGCGCTCGTGGGTGCGTACGGTCGACAGTACAGT
AGTACACGTATCCTGAGTATAGTACTTCCTCGCTCACCTCCTAACTGAAC
AGTACAGTAAGTTGTGCACCTTCATGCTCTATTGTACTGCAGTTAGTTAA
CGGTTGAGTGCCCCCCCCCCCCCCTCCCGATACGCGCTGAATCACGACAG
TTGCTGCTCAGGCACAGGCCGCATGTGAAGGTGTGGGGGATGGCCACCCA
GCGGGGGTACTCGGTGTTTGAGCACTGGCGAAACGACGCGGAGCAGAGGC
TGGAGATGATGAGCTGGGTCGGGGACGGCCTGGTGCTGTGTAGCAATCAA
TCGGCGCCGATTTGATGTGATGTGATGTACTTCGAAGTACTGTGCTGTCC
ACGCAATCGGCGGCGGCGGTGTGATGTGATGTGATGTACTGTGCGAACCA
CGTCACGTCGCAGCACAGCAGGTTGACATTACAGCGTGGTGCTGTGTAAA
TACGCAGTCGGCGGCGATGTGACGTGTTGTGATGTTATGTGATGTACTGT
GCGAAGCACATCATGTCGCCGAACAGTAGGTTGACATCACAGCACGCCAC
GCCACAAAAAAAGCGCCGCCGCAATTTGCAACGCCTCCGCTCAGTGGCAC
TGGCCCAGCCACGGCGATGGCTGTGAGCGGCGCTGCGAGGCCTTTGTATC
GTTTGTTTTGCTGAAGTGTTTAGCATGCGGTGGGGTGTGTATTGGAAGCA
CGCGCACTGTATCGTGCAGTATCGCGGCTCTTGGGGAATAGAGCGCTAGT
CGTCGGTGGGTTCTTGCGGTAGTGTCACGTTCACGCTTGTGTCCTGCGAG
GTGCTTTTTTCTGAGAGGGTGCCCTGTTTACTGGTGATCGCTTACTGTCC
TTCATGATAGAGCGGTGCACTGTACTGCCAGTCTCTTCTTTTTTTGTAGC
CCCATGTTGCGCGTCCTGTCCGAGTTCTTCAGCTATGGGGCTCTGCAGAA
CAGTGCAGTGCTATGTAGGCGCAACAACTACTGTAGGTGCATCGAAGATA
CAGTACGGTACTGCAGTATGGTACTGTACTCTGGGCCGTACTGTATTCGA
GTATTCACCACTGTTTCGAGGTACTGTACATAGATGTACTGCATGTGTAC
GAGTACTCGGAGTATTGTACTTGTACGGGCACGGACAACGCGCGGTTTCG
CCGAGCCGCCGGCCGAAGATAGCGCAAACTTAAGACTCTGTATGAGTGGC
TGTTCCCAAGATAGCACAAAGGGCAAGACGCTGCATGAGTAGTTGTCCCG
AAGATAGAACAAAGTCAAGACTTTACCTGTTCCAGAGATGGCACAAAGTC
AAGACTCTTGTACTCGTACGTCCTTGGAAGTACTTCGATGTATGATTTTT
TATGTTTGAGTAGCAGATGCCCTGAGACCCTGCGAGCCCTTCCCTTGGGG
CTGCCCGCAGCACAACGGCCGCCGACACCTACATAGTTTCGAGTATGAGT
AGTGGTACTTGTGGAAGTATATCGGAGTATAGGCTAAGCACTGCAGTACA
GTACTCGCATTCTGGGGAGGCAGGCACACAGCCTGGCCGGTGCAACCCCG
GCAGTGCTCCGCCCCGTCTACATTGTACATTGTAAAGCCGATAGGTAGGT
TGGAGAGCCCAAGTGCTATCTGGATCCCCTATAGGGGCCGGCAGCGGCAG
CTATACAATTGTATGTTTTCCTCCCCCGCCGGCCAGTGGGACGCGAGCAA
ATATCACCATGTGTCAAGAGGTGCACGGATGAGCGCCTGCGAGTGCGTGC
TTCTACTGTAGTCTAGTACTTGAGCAGTAGCTGCTTCGCACCACATGTGT
GCTTACTCGAGTACCGTACGACACTCACTACTGCGCCGTAGCACATACTG
TACTGTAGTACTTCCTTGGAAGTAGATCCTTTTTGCGTGTTTGCTGCACA
TGAGTCGGTTGGCGGCACGTTGTACGTGCCTTGTCATTCCCACTCTCCTC
TTGATTGATTTGTTGGAGTACTCGAGTGCAGTACTTCGAAGTGCCGGGCC
TGGAGGCGTGTGTACCTTAAGGTCTGCTGGATTGCTTGCTAGCGGATGTA
CCCATTTTGTACCGTGCGTATCAACAATTTGCCAGTAATGACGACCATTT
GACAAGTGTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig83:85876..89735- >mRNA_S-ischiensis_contig83.19948.1 ID=mRNA_S-ischiensis_contig83.19948.1|Name=mRNA_S-ischiensis_contig83.19948.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig83:85876..89735- (Schizocladia ischiensis KU_0333)
ATGGAGGCCCTGGCCCGGGAAAGCTGGGCGGAGATGGAGGCCCTGGCCCG
GGAAAGCTGGGCGGAGGTGACCTTGGTGACGGACGGCAGGGACAAGAACG
CCATGAACCCCACGTACAGCGTCCTTCAGGAGCACGCCAAGCGGCACCTG
TTCGACTTCCCGGTACAAACCGTTCAGGTGACCTTGGTGACGGACGGCAG
GGACAAGAACGCCATGAACCCCACGTACAGCGTCCTTCAGGAGCACGCCA
AGCGGCACCTGTTCGACTTCCCGGTACAAACCGTTCAGCATGGCGATCTG
GTTTCTGACATACGGGAGCTGATCTGCGCGGACGCCATCGTGGCACCCCG
GACCTCCTCCCTCAACGAGTTCTTCCTCTTCCATAGCCGAGCTGACACCA
TGGTCGTGCCGTACGAGTGCAATGAGATGACCGTCAGGCATGGCGATCTG
GTTTCTGACATACGGGAGCTGATCTGCGCGGACGCCATCGTGGCACCCCG
GACCTCCTCCCTCAACGAGTTCTTCCTCTTCCATAGCCGAGCTGACACCA
TGGTCGTGCCGTACGAGTGCAATGAGATGACCGTCAGGTTGCTGCTCAGG
CACAGGCCGCATGTGAAGGTGTGGGGGATGGCCACCCAGCGGGGGTACTC
GGTGTTTGAGCACTGGCGAAACGACGCGGAGCAGAGGCTGGAGATGATGA
GCTGGGTCGGGGACGGCCTGGTGCTGTGTAGCAATCAATCGGCGCCGATT
TGATTGCTGCTCAGGCACAGGCCGCATGTGAAGGTGTGGGGGATGGCCAC
CCAGCGGGGGTACTCGGTGTTTGAGCACTGGCGAAACGACGCGGAGCAGA
GGCTGGAGATGATGAGCTGGGTCGGGGACGGCCTGGTGCTGTGTAGCAAT
CAATCGGCGCCGATTTGA back to top
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