mRNA_S-ischiensis_contig82.19931.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19931.1
Unique NamemRNA_S-ischiensis_contig82.19931.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.470e-20
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   52 VVRFELQGGAEDPETGVESTFEV----PQRGVTLAVLKHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGL 291
            +V + +QG  +DPETGV+S+F V    P R +TL  L+  FPF GTFHFRL+V D + LS + W+DLT D  D+LELA+NLGGL
Sbjct:    6 LVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGL 89
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BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.820e-17
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:   52 VVRFELQGGAEDPETGVESTFEVPQ-RGVTLAVLKHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGL 291
            ++ + LQG  + PETGVES+ E+ Q + +TLA LK  FP+ GTFHFRL+V D    +  VWLDLT++  D++ELA+NLGG+
Sbjct:    2 LLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGI 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB26_ECTSI3.470e-2054.76ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YT59_9STRA1.820e-1751.85ELMO/CED-12 family-domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:461445..462438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.4e-17
Seed eggNOG ortholog2880.D8LB26
EggNOG free text desc.ELMO domain-containing protein
EggNOG OGsKOG2998@1,KOG2998@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817322.4455125-CDS-S-ischiensis_contig82:461444..4616391622817322.4455125-CDS-S-ischiensis_contig82:461444..461639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 461445..461639 +
1695741025.9927073-CDS-S-ischiensis_contig82:461444..4616391695741025.9927073-CDS-S-ischiensis_contig82:461444..461639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 461445..461639 +
1622817322.4593678-CDS-S-ischiensis_contig82:462332..4624371622817322.4593678-CDS-S-ischiensis_contig82:462332..462437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 462333..462437 +
1695741026.0079882-CDS-S-ischiensis_contig82:462332..4624371695741026.0079882-CDS-S-ischiensis_contig82:462332..462437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 462333..462437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19931.1prot_S-ischiensis_contig82.19931.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 461445..462437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19931.1

>prot_S-ischiensis_contig82.19931.1 ID=prot_S-ischiensis_contig82.19931.1|Name=mRNA_S-ischiensis_contig82.19931.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
TRPRRLRDGATGTNAMPVVRFELQGGAEDPETGVESTFEVPQRGVTLAVL
KHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGLWSA
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mRNA from alignment at S-ischiensis_contig82:461445..462438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19931.1 ID=mRNA_S-ischiensis_contig82.19931.1|Name=mRNA_S-ischiensis_contig82.19931.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=994bp|location=Sequence derived from alignment at S-ischiensis_contig82:461445..462438+ (Schizocladia ischiensis KU_0333)
ACTCGACCTCGACGACTGCGCGACGGAGCGACGGGGACGAACGCAATGCC
CGTGGTGCGGTTCGAGCTGCAGGGGGGCGCCGAGGACCCTGAGACGGGGG
TGGAGTCGACGTTCGAAGTGCCGCAGCGTGGCGTGACGCTGGCGGTGCTG
AAGCACCACTTCCCCTTCTACGGGACCTTCCATTTCCGCCTTCGGGTAGG
CACGGCCGCCCCCCCCGCCGCAACTGTTGCCCCCAATCCACCCCTGCAAC
TGCAGTCACGGCATCGCCACGTGGTTTCGTCATTAGTTGGCGAAGGGTGA
AAGGCGCGCATGGCGCATCCCTTGCCCCCCCAGAGCCCCCTGTTGCTGTC
CCCGCGACACTGTCCCTCCGAACTGAGTTGGCAAGGGCGATATTGCAATT
TAGGTGTGCTGCTTCGTCAAGCATTCATTCGAAAAGGCCCTCAGTGCGCA
CTATAATGGCCCTGCTAAAGGGTACGTAAAAAAAAGGCCGAGCATTTTGC
AGCATGTTTGGCTTGCCGGCGACACTTACAAAGCCCCAACTAGCAAGGCT
GTCAGTTGCCCAAATAAGTTAGGAGGCGTTGCCCGCACACTTGTACTATG
TAGTATGTCAGGTTCAGGCGATACACCGCCCCGGGGGTGGTGCGGCTGCC
GAGGGTGATAATGTGCTATACGCTGCATCCCCGCACAAGACCTTTCGTGT
ATGTGGGAACACCTCTTCTTTCCCGCTACGAGAACACTCTATCTCTAACA
CGTGCGATTGTACCTCGTTACATATATGTACTCACGTGGAGCTTGAAGTA
GTCCCGAGACCATTGACCTCGTTACAATTTGTATGAATCAACACCTCTTC
TTTCTCACTCGCCTGTTGTCTTCTTGCAAAACACACAGGTGGAGGACGAG
TCCTCCCTGTCTCACTTCGTGTGGCTGGACCTTACGAGAGACGACCAGGA
CGTCTTGGAGCTGGCGCAGAACCTGGGAGGGCTGTGGTCGGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:461445..462438+

>mRNA_S-ischiensis_contig82.19931.1 ID=mRNA_S-ischiensis_contig82.19931.1|Name=mRNA_S-ischiensis_contig82.19931.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig82:461445..462438+ (Schizocladia ischiensis KU_0333)
ACTCGACCTCGACGACTGCGCGACGGAGCGACGGGGACGAACGCAATGCC
CGTGGTGCGGTTCGAGCTGCAGGGGGGCGCCGAGGACCCTGAGACGGGGG
TGGAGTCGACGTTCGAAGTGCCGCAGCGTGGCGTGACGCTGGCGGTGCTG
AAGCACCACTTCCCCTTCTACGGGACCTTCCATTTCCGCCTTCGGACTCG
ACCTCGACGACTGCGCGACGGAGCGACGGGGACGAACGCAATGCCCGTGG
TGCGGTTCGAGCTGCAGGGGGGCGCCGAGGACCCTGAGACGGGGGTGGAG
TCGACGTTCGAAGTGCCGCAGCGTGGCGTGACGCTGGCGGTGCTGAAGCA
CCACTTCCCCTTCTACGGGACCTTCCATTTCCGCCTTCGGGTGGAGGACG
AGTCCTCCCTGTCTCACTTCGTGTGGCTGGACCTTACGAGAGACGACCAG
GACGTCTTGGAGCTGGCGCAGAACCTGGGAGGGCTGTGGTCGGCCGTGGA
GGACGAGTCCTCCCTGTCTCACTTCGTGTGGCTGGACCTTACGAGAGACG
ACCAGGACGTCTTGGAGCTGGCGCAGAACCTGGGAGGGCTGTGGTCGGCC
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