prot_S-ischiensis_contig82.19931.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig82.19931.1
Unique Nameprot_S-ischiensis_contig82.19931.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length100
Homology
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BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.470e-20
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:   18 VVRFELQGGAEDPETGVESTFEV----PQRGVTLAVLKHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGL 97
            +V + +QG  +DPETGV+S+F V    P R +TL  L+  FPF GTFHFRL+V D + LS + W+DLT D  D+LELA+NLGGL
Sbjct:    6 LVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGL 89
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BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.820e-17
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 0 
Query:   18 VVRFELQGGAEDPETGVESTFEVPQ-RGVTLAVLKHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGL 97
            ++ + LQG  + PETGVES+ E+ Q + +TLA LK  FP+ GTFHFRL+V D    +  VWLDLT++  D++ELA+NLGG+
Sbjct:    2 LLHYVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGI 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB26_ECTSI3.470e-2054.76ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YT59_9STRA1.820e-1751.85ELMO/CED-12 family-domain-containing protein n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001158DIX domainPFAMPF00778DIXcoord: 35..87
e-value: 3.7E-5
score: 23.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:461445..462437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19931.1mRNA_S-ischiensis_contig82.19931.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig82 461445..462438 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig82.19931.1 ID=prot_S-ischiensis_contig82.19931.1|Name=mRNA_S-ischiensis_contig82.19931.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
TRPRRLRDGATGTNAMPVVRFELQGGAEDPETGVESTFEVPQRGVTLAVL
KHHFPFYGTFHFRLRVEDESSLSHFVWLDLTRDDQDVLELAQNLGGLWSA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001158DIX