mRNA_S-ischiensis_contig8.19600.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19600.1
Unique NamemRNA_S-ischiensis_contig8.19600.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19600.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.560e-33
Identity = 76/177 (42.94%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:    1 AHVTVSPPTHRGQAALIPWDAA-RVRVGGRAGDPL*VRVYVDDSILVEVQWFEDRRRCMRATRCLVSDHLRLLWGGGSEGDGD-GGPEALSKKKLTDWRMEAVVLGLAVDTEAMRIGLPAEKCNALRALL-VQWPPRSTRARAHDILELAGKLWNAAYVVRTGRYFVWRLLRLTGLH 522
            +HV + PP  +G    IP  A  R   GG   D    RVYVDD +L +VQ     +  + A+  L SDH+RL       G G+ G P  LS KK TDW      LG  +DT A RI    E+ +A+R +L   WP    +AR   +L +AGKLWN  +V+R GRYFVW+LLRL+GLH
Sbjct:  221 SHVKIKPPWEKGTPTPIPSSAGVRPHRGGGPADDFLARVYVDDFLLTKVQHDPTDQSALIASALLASDHVRLF------GKGELGKPPILSPKKSTDWDTVIEALGYIIDTHAGRIATTPERVSAIRNILETDWPHDRKKARVQQVLSIAGKLWNLTHVIRAGRYFVWQLLRLSGLH 391
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BLAST of mRNA_S-ischiensis_contig8.19600.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.010e-27
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 1 
Query:    4 HVTVSPPTHRGQAALIPWDAA--RVRVGGRAGDPL*VRVYVDDSILVEVQWFEDRRRCMRATRCLVSDHLRLLWGGGSEGDGDGGPEALSKKKLTDWRMEAVVLGLAVDTEAMRIGLPAEKCNALR-ALLVQWPPRSTRARAHDILELAGKLWNAAYVVRTGRYFVWRLLRLTGLHR 525
            HV +  P   G    +P DA     + G R+ + + V VYVDD  L+  Q   D    +  +  L SD++RL  G G  G+       L+ KK ++W  +   LG  +D+  ++I L  +K  AL+ AL + WP     A A ++  +AGKLWN  YVVR G+YFVWRLLRLTGLHR
Sbjct: 1141 HVKIVEPWEEGDPTPVPDDATVHATKGGDRSSNFMSV-VYVDDHGLLRTQQSPDDLSALTVSASLASDYVRLF-GPGEPGE----TPILAPKKSSNWDTQLEYLGFVIDSHKLKISLTTKKAEALKTALEIDWPRHKREATAQEVFSIAGKLWNLTYVVRAGKYFVWRLLRLTGLHR 1311
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZM1_9PHAE3.560e-3342.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGT0_9PHAE2.010e-2738.98Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2417066..2417614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8756132-UTR-S-ischiensis_contig8:2417065..24172361622817267.8756132-UTR-S-ischiensis_contig8:2417065..2417236Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2417066..2417236 +
1695740981.7148216-UTR-S-ischiensis_contig8:2417065..24172361695740981.7148216-UTR-S-ischiensis_contig8:2417065..2417236Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2417066..2417236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8884797-CDS-S-ischiensis_contig8:2417236..24176141622817267.8884797-CDS-S-ischiensis_contig8:2417236..2417614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2417237..2417614 +
1695740981.7296605-CDS-S-ischiensis_contig8:2417236..24176141695740981.7296605-CDS-S-ischiensis_contig8:2417236..2417614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2417237..2417614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19600.1prot_S-ischiensis_contig8.19600.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2417237..2417614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19600.1

>prot_S-ischiensis_contig8.19600.1 ID=prot_S-ischiensis_contig8.19600.1|Name=mRNA_S-ischiensis_contig8.19600.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MRATRCLVSDHLRLLWGGGSEGDGDGGPEALSKKKLTDWRMEAVVLGLAV
DTEAMRIGLPAEKCNALRALLVQWPPRSTRARAHDILELAGKLWNAAYVV
RTGRYFVWRLLRLTGLHRCPSLPPGA
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mRNA from alignment at S-ischiensis_contig8:2417066..2417614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19600.1 ID=mRNA_S-ischiensis_contig8.19600.1|Name=mRNA_S-ischiensis_contig8.19600.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=549bp|location=Sequence derived from alignment at S-ischiensis_contig8:2417066..2417614+ (Schizocladia ischiensis KU_0333)
GCCCACGTAACCGTGAGCCCGCCCACCCACCGCGGCCAGGCGGCACTAAT
CCCCTGGGACGCGGCTCGTGTTCGCGTAGGGGGACGGGCTGGTGACCCTT
TGTAGGTGCGGGTGTACGTAGACGATAGTATACTGGTGGAGGTGCAGTGG
TTTGAGGACAGACGGCGGTGCATGCGGGCGACGCGCTGCTTAGTGTCCGA
CCACTTGCGCTTACTGTGGGGCGGTGGCAGCGAGGGCGACGGCGATGGGG
GTCCCGAAGCGCTATCTAAGAAGAAGTTAACCGACTGGCGGATGGAGGCC
GTAGTGCTGGGCCTTGCAGTAGACACCGAAGCCATGCGCATCGGGCTACC
GGCGGAGAAGTGTAACGCTCTTCGCGCGCTACTAGTGCAGTGGCCTCCGC
GCTCCACCCGCGCGCGGGCGCATGATATCCTGGAGCTAGCGGGTAAGTTG
TGGAATGCGGCATACGTGGTCCGCACGGGTAGGTACTTTGTGTGGCGCCT
CCTGCGACTAACAGGGCTGCACAGGTGCCCCTCGTTGCCGCCGGGGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2417066..2417614+

>mRNA_S-ischiensis_contig8.19600.1 ID=mRNA_S-ischiensis_contig8.19600.1|Name=mRNA_S-ischiensis_contig8.19600.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig8:2417066..2417614+ (Schizocladia ischiensis KU_0333)
ATGCGGGCGACGCGCTGCTTAGTGTCCGACCACTTGCGCTTACTGTGGGG
CGGTGGCAGCGAGGGCGACGGCGATGGGGGTCCCGAAGCGCTATCTAAGA
AGAAGTTAACCGACTGGCGGATGGAGGCCGTAGTGCTGGGCCTTGCAGTA
GACACCGAAGCCATGCGCATCGGGCTACCGGCGGAGAAGTGTAACGCTCT
TCGCGCGCTACTAGTGCAGTGGCCTCCGCGCTCCACCCGCGCGCGGGCGC
ATGATATCCTGGAGCTAGCGGGTAAGTTGTGGAATGCGGCATACGTGGTC
CGCACGGGTAGGTACTTTGTGTGGCGCCTCCTGCGACTAACAGGGCTGCA
CAGGTGCCCCTCGTTGCCGCCGGGGGCTATGCGGGCGACGCGCTGCTTAG
TGTCCGACCACTTGCGCTTACTGTGGGGCGGTGGCAGCGAGGGCGACGGC
GATGGGGGTCCCGAAGCGCTATCTAAGAAGAAGTTAACCGACTGGCGGAT
GGAGGCCGTAGTGCTGGGCCTTGCAGTAGACACCGAAGCCATGCGCATCG
GGCTACCGGCGGAGAAGTGTAACGCTCTTCGCGCGCTACTAGTGCAGTGG
CCTCCGCGCTCCACCCGCGCGCGGGCGCATGATATCCTGGAGCTAGCGGG
TAAGTTGTGGAATGCGGCATACGTGGTCCGCACGGGTAGGTACTTTGTGT
GGCGCCTCCTGCGACTAACAGGGCTGCACAGGTGCCCCTCGTTGCCGCCG
GGGGCT
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