mRNA_S-ischiensis_contig8.19566.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19566.1
Unique NamemRNA_S-ischiensis_contig8.19566.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.290e-76
Identity = 135/230 (58.70%), Postives = 175/230 (76.09%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE--LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
            MRLTAD+I+HARASINPC+ERELDLRGYKIPMIENLG TQDQFD +D SDNE++K+DNF R +RLSS+LL NNHVSKI  DLG  +PNL+ L+LT NK+  L+E+ GL +CTKL +LSL  N V  +  YRLY+IN +PSLK LD++KVT++ER+ A RL  S AG+AM +DV ++A +A+T      AA E  LT     +Y   I K+T++EE+E L K+I+AG+ P+
Sbjct:    1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 230          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 231 bits (589), Expect = 9.820e-70
Identity = 128/231 (55.41%), Postives = 169/231 (73.16%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE---LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
            MRLTAD+IL A A+INPC ERELDLRGYKIP+IEN+GATQD FDT+D SDNE++K++NF R  RL+++L NNNH+SKI   +  QVPNL+TL     +++ L+E+D L    KL LLSL ENPV R  +YRLYVI++ P+LK LD+RKV  QERQ+AARLF S AG+ M  DV++   E +T  A EK  RE   LT  Q  +  + I  +T+ EEV++L++++KAG+ PN
Sbjct:    1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQK---EIKTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPN 228          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 226 bits (576), Expect = 6.110e-67
Identity = 129/240 (53.75%), Postives = 173/240 (72.08%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP---NSADVAAAVA 864
            MRLTAD+IL ARAS+N   ERELDLRG+KIP+IEN+G TQDQFDT+D SDNE+QK+DNF R  RL+++LL+NN +++IG D+G ++PNL+ LVLT N + +LSE+D L  C +L +LSL ENPV R  +YRLYVI+K+PSLK LD+ KV  +ER +A RLF S AGRAM  D+   A +A+T      A   LTPAQ      +I ++ + EE++RL++ ++AG+ P      D AAA A
Sbjct:    1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDI---ALQAKTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAA 237          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A4D9D4U7_9STRA (SAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4U7_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.420e-61
Identity = 119/229 (51.97%), Postives = 169/229 (73.80%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGR----AMARDVERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGL 828
            MR+TAD+++HARA +NP  ERELDLRG KIP+IENLG TQDQFDT+DLSDNE++++DNF R RRL ++LL NN +++ G+ LG Q+  L  LVLT NKV  LSEID LAS TKL  LSL +NPV R  +YRLY+++K+P L +LD++KV   ER+ A +LF S AG+    A+A + +  A E+ T  A EK  R +T  +  + + +I+K+T+ EE+ER++++++AG+
Sbjct:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAES-TGKAREK--RVMTEEEKRLAQAMIDKATTPEELERVERQLRAGI 226          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.320e-60
Identity = 114/231 (49.35%), Postives = 161/231 (69.70%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDV----ERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
            MRLT+D++L+A A +NPC+ERELDLRG KIP IEN+G TQD +DTLD +DNE++K++NF  T+RLS +LL+NNHV  I  ++  ++P+L TLVLT NK+  LSE+D LA+C  L  LSL  NPV R  +YR YVI+K+P LK+LD+ K+  +ERQ+A RLF S AG+ M  DV    E    EA TA        E+  AQ+      I  +++ +E++R+++++KAG+ P
Sbjct:    1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMAQLNEVDRAQVRAA---IAAASTPQEIDRIERQLKAGILP 228          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.440e-58
Identity = 111/229 (48.47%), Postives = 154/229 (67.25%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRA-TEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
            +RLTAD++ +  A INPC +RELD+RG K+P IEN+G T+DQ+DTLD SDNE++K++NF R  RLS++LLNNNH+++I   LG Q+ +L            LSE+D L  CTKL  LSL  NPVAR  +YRLYVI+K+PS+K+LD+ KV  QER  AARLF S AG+ M +DV+  A T     D         T  Q+     +I  +T+ EEV+R+++++KAG+ P+
Sbjct:    2 VRLTADVLQNCFARINPCLDRELDIRGLKVPAIENIGVTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKVKPQERADAARLFKSAAGKLMQQDVDAEASTFTPGEDMPSNPMANFTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPS 230          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A3B3QBN1_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QBN1_9TELE)

HSP 1 Score: 197 bits (502), Expect = 5.340e-58
Identity = 111/230 (48.26%), Postives = 158/230 (68.70%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELT---PAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
            ++L+A+LI  A    NP  +RELDLRGYKIP++ENLGAT DQFDT+D S+NE++K+D F   RRL ++L+NNN + +IG DL   +PNL  L+LT N ++ L ++D LAS   L LLSL  NPV  + +YRLYVINK+P L++LD++KV ++ERQ+A ++F    G  +A+D+ +R T+  T  A  +A +  T   PA +E  +  I  +TSL EVERLK  ++AG  P
Sbjct:   13 VKLSAELIEQAAQYTNPIRDRELDLRGYKIPVLENLGATLDQFDTIDFSENEIRKLDGFPLLRRLKTLLMNNNRICRIGEDLEQSLPNLKELILTNNSIQELGDLDPLASIKSLTLLSLLRNPVTNKKHYRLYVINKIPQLRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAKR-TKTFTPGANLQAEKRKTGPSPADVEAIKNAIASATSLAEVERLKGLLQAGQIP 241          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI001ED8687B (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8687B)

HSP 1 Score: 196 bits (498), Expect = 7.420e-58
Identity = 109/229 (47.60%), Postives = 158/229 (69.00%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELTPAQLEVYE--QLINKSTSLEEVERLKKRIKAGLAP 834
            ++LT +LI  +   INP  +RELDLRGYKIP+IENLGAT DQFDT+D SDN+++K+D F   +RL  +LLNNN + +I   L   +PNL +L+LTGN ++ L++ID LA+  KL  LSL  NPV  +P+YRLYV  K+P+L+LLD+RK+ ++ER++A  LF S  G+ M R++ ++A        +    +   PAQ +V +  + I +++SLEEVERL + +KAGL P
Sbjct:    2 VKLTPELIQQSLQYINPVKDRELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCLLLNNNRIVRIAESLETTLPNLESLILTGNSIQELADIDPLATLKKLTTLSLLHNPVTTQPHYRLYVAFKLPNLRLLDFRKIKMKEREEANTLFKSKRGKEMQREMAKKAKTFVPGAGLSDTPKPSGPAQEDVRKIREAIARASSLEEVERLNRLLKAGLVP 230          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI000875976A (U2 small nuclear ribonucleoprotein A' n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000875976A)

HSP 1 Score: 195 bits (496), Expect = 7.640e-58
Identity = 108/229 (47.16%), Postives = 155/229 (67.69%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE--LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
            ++LTA+LI ++   INP  +RELDLRGY+IP IENLGAT DQFDT+D SDN+++K+D F   +RL  +LLNNN + +IG  L   +PNL +L+LTGN++  L +ID L S  KL  LSL  NPV  + +YRLYVI ++P LKLLD+RK+ ++ER +A  LF S  G+ M +++ +RA        +   A+   L+  ++      INK++SLEEVERL+K +++G  P
Sbjct:    2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTVDFSDNDIRKLDGFPYLKRLKCLLLNNNRIVRIGEHLEEYIPNLESLILTGNQIADLGDIDPLVSLEKLTTLSLMHNPVTAKQHYRLYVIYRLPQLKLLDFRKIKLKERDEARTLFKSKKGKEMQKEISKRAKTFVPGGGINNIAKNKGLSDEEVRKIRDAINKASSLEEVERLQKILQSGQIP 230          
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI00096B1E3E (probable U2 small nuclear ribonucleoprotein A' n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B1E3E)

HSP 1 Score: 194 bits (494), Expect = 1.440e-57
Identity = 108/230 (46.96%), Postives = 157/230 (68.26%), Query Frame = 1
Query:  154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEART-ADAVEKAARELTPA-QLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
            ++LTA+LI ++   INP  +RELDLRGY+IP IENLGAT DQFDT+D S+N+++K+D F   +RL  +LLNNN + ++G  L   +PNL +L+LTGN +  L +ID L +   L  LSL  NPV  E NYRLYVI K+P L+LLD+RK+ ++ER++A  LF S  G+   +++  R+    T  D +EK  +   P+ ++    + INK++SLEEVERL+K ++AG  P+
Sbjct:    2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTIDFSENDIRKLDGFPYLKRLKCLLLNNNRIVRLGEHLEEYIPNLESLILTGNHIDELGDIDPLVTLENLTTLSLLHNPVTAEANYRLYVIFKLPQLRLLDFRKIRMKEREEAKALFRSKKGKESLKEISNRSLNKGTNEDTLEKRVQNGPPSHEVRKIREAINKASSLEEVERLQKLLQAGQLPD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC4_ECTSI1.290e-7658.70U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A7S3XKJ1_HETAK9.820e-7055.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZE59_9STRA6.110e-6753.75Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A4D9D4U7_9STRA3.420e-6151.97SAP domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2F7F7_9STRA4.320e-6049.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WMG2_9STRA2.440e-5848.47Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A3B3QBN1_9TELE5.340e-5848.26Small nuclear ribonucleoprotein polypeptide A' n=2... [more]
UPI001ED8687B7.420e-5847.60U2 small nuclear ribonucleoprotein A'-like n=1 Tax... [more]
UPI000875976A7.640e-5847.16U2 small nuclear ribonucleoprotein A' n=1 Tax=Anop... [more]
UPI00096B1E3E1.440e-5746.96probable U2 small nuclear ribonucleoprotein A' n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2234121..2237107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.7e-65
Seed eggNOG ortholog2880.D8LSC4
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU2 small nuclear ribonucleoprotein A
Ec32 orthologEc-21_003190.1
Exons4
Model size935
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19566.1prot_S-ischiensis_contig8.19566.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2234121..2236954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.450963-CDS-S-ischiensis_contig8:2234120..22344441622817289.450963-CDS-S-ischiensis_contig8:2234120..2234444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2234121..2234444 -
1695740999.1688383-CDS-S-ischiensis_contig8:2234120..22344441695740999.1688383-CDS-S-ischiensis_contig8:2234120..2234444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2234121..2234444 -
1622817289.4631846-CDS-S-ischiensis_contig8:2235810..22361551622817289.4631846-CDS-S-ischiensis_contig8:2235810..2236155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2235811..2236155 -
1695740999.1826372-CDS-S-ischiensis_contig8:2235810..22361551695740999.1826372-CDS-S-ischiensis_contig8:2235810..2236155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2235811..2236155 -
1622817289.473834-CDS-S-ischiensis_contig8:2236660..22367441622817289.473834-CDS-S-ischiensis_contig8:2236660..2236744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2236661..2236744 -
1695740999.1923835-CDS-S-ischiensis_contig8:2236660..22367441695740999.1923835-CDS-S-ischiensis_contig8:2236660..2236744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2236661..2236744 -
1622817289.4840107-CDS-S-ischiensis_contig8:2236927..22369541622817289.4840107-CDS-S-ischiensis_contig8:2236927..2236954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2236928..2236954 -
1695740999.203398-CDS-S-ischiensis_contig8:2236927..22369541695740999.203398-CDS-S-ischiensis_contig8:2236927..2236954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2236928..2236954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.4962194-UTR-S-ischiensis_contig8:2236954..22371071622817289.4962194-UTR-S-ischiensis_contig8:2236954..2237107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2236955..2237107 -
1695740999.2123024-UTR-S-ischiensis_contig8:2236954..22371071695740999.2123024-UTR-S-ischiensis_contig8:2236954..2237107Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2236955..2237107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19566.1

>prot_S-ischiensis_contig8.19566.1 ID=prot_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=260bp
MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSD
NEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVK
MLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVT
IQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELTPAQLEV
YEQLINKSTSLEEVERLKKRIKAGLAPNSADVAAAVAEGNGNANSAALNG
NGATVAAAAG
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mRNA from alignment at S-ischiensis_contig8:2234121..2237107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19566.1 ID=mRNA_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2987bp|location=Sequence derived from alignment at S-ischiensis_contig8:2234121..2237107- (Schizocladia ischiensis KU_0333)
GAGGAGGAAGCGCGGAGCGGCCACGCCGAGCCCGACGCTCGCTCAAGGAG AGGGCAGGGGTGTGCGCGGTACGGATTGCTTTGTAGCATCATCCCCTGAC AGGGGATCGGGGGCCCGCGTCACGGCAAACGGGCTTGGGGCCTACGCGTC ACCATGAGGCTCACGGCGGACCTGATCTTGGTGAGACGAGGCGCCGCCGG GACCGCGCCACTGCCCACTCGCGCGCGTGATTCTTTCTTCTTCTCCTCCA CGCATAAACTATGTATTTGCACGTTGCCGTCCCCCGTGCAGATCGCAGTG GACTCTTCTCACCCCCCCACGACTGCCCTTTGTTGCCCTGCAATCGCTGA ATGCCCGCGCCAGCACGCCCGCGCCAGCATCAACCCTTGCAATGAGCGTG AGCTGGATCTTCGTGGGTACAAGATACCCATGATCGAAAACCTGGGGGTG AGACGCCTTGTGCTTTGATTTGCCGAGTCGCGCTGTCATGCCGGGCCTCA TCAAGCGTTTTGTGGGAAGAGTCCGGCTAGCCCTGCCTTGTCTCCTTTGT GTGCGTTTGGTGGGCCCCACGTCATTGACATCTTTGGCAATGGTCGCTTA CCGCTCCTGAGTCCCGCTCAGCTCAGAGTGGCTTGAGCTGCCTAAACCCC GTCCATTCGTTGTGGCACGGCTGGTATGACTACTACTTGTGGCCATGGCA CGTGGCGGAGTATTGATCCCCCACCTTAGAGCGGCAAGCCTGTGTTGAGA ATGCGTGCGTGTCCCAGCGCCAGCGCTGTGGCTGCTTCTCCGCCCGGGCC GCCATCCTGCAATCCACGATCCCCCCCCCCGGCGTGCATGCGTGCGTGCA TGCGTCCACACGGGCACACGGGCACGCATGCGCCACCGGCCTCCTGTTTC TTGCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGCGC AGGCCACGCAAGACCAGTTCGACACGCTGGACCTCTCGGACAACGAGGTG CAAAAGGTGGACAACTTTGGGCGTACCCGGCGCCTGTCCTCGGTCCTGCT CAACAACAACCACGTGTCCAAGATCGGGGCGGACCTGGGCGGGCAGGTCC CCAACCTCACCACCCTGGTGCTGACCGGCAACAAGGTGAAGATGCTCAGC GAGATCGACGGCCTGGCGTCCTGCACGAAGCTGGAGCTGCTGAGCCTCTG CGAGAACCCCGTGGCCCGGGAGCCCAACTACCGCCTCTACGTGATCAACA AGATGCCCTCCCTCAAGCTCCTGGACTACAGAAAGGTCACGATTCAGGTG AGAAAGCGGGAAGCGGCACGTGCTGTATACTGCGGCGGTGGCGCCTGCTC TGCCGCACGTGGGCGGGTCCGCATGCGGTCTGCTTGTTTATTGGCGGCGG CGGCGGCGGCGGAATTTCTGGATGGAGCGCCCTACATACCGCACTGCAGG AGCGGCGTTTGGCGAATTGATTTTAAGGCCCCGGCGGCTTTCCCCCCCGA TCGCACCTCGACACATCGCGGACAGCGAGAGCGATGGGCTTTGTACCGTG GAGTTGTTTTTTGGAAGTTTTCTCATCTCCCCTCACCTGTGGATACACCA CGGACAGCGCACAGCTGGCAGTGAATTGGGAGGTTGGTGCGGCAGCTTTT GGGCCCCATTATTTTTTTCATGCCATGTGTTCTACGAATTGTCGAGACGT CCCCTATTGAATTGTGAGAGCTCGGGAGTTGTTTCCCGCGGGATGCCACC CATGGTCCTTGAATTGATGAGTGGTCCTCCTCTCATTGCGCACTTCGTGT CACATCTTGCATATCTTGAGGTGCAGTATTGAGTACGGTACTAGAGCCCG TGTGTGTTTGACGGGTCGTCTTAAATTTGCGCACTGAGAATGGTCGCATG CACTCCGTTGTGCTGGCCGCAACAACACCCAGGGGTCATCCACCGCGCAC CCTGTTTCATGCATGGAGTAGTATTATACATGCTCACGCAGTGCTTGCAG TAGTACCGAGACCATCGTACTTCCGGAAGTACTTCGAAATATATATATAT ATATGTACTGTAGTCACGAACGAGGCGCGAAGTCAATGGTCTCGGGACTA CGGCAAGCACAACGTGAGTACATATATATATATATATATATATATATACA CACACCTCAAGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCCATGAC CACGCGCCTCGATATGTATACAAGTACGGTAATTAATAAAAGCGCAGCAC AGTAGGAGAATGAAGGGATCCTTGTTTGATCGGGCCGCGCGAGGAACAGG GCCCATTTGCTGCGGCCGCCGCCCGGGAGGTGGGGGGCAAGTTTCGGTTT AATTTGTGTTCAGGTTTGTTCTTTGTGTTGGGTTTATGCTTGCGTGCCTT TTGAAATGGCGGGGCCGAATCAATTTCCCGGGGGTTGAACCGTGTGAAAC ACGGCTGATGCATTGTGTGTAGAGAATGCTCGCCCTCCCTCCATAGCCCT TGGTTTTGATGAACACATGCTTGTGTGGGTGGATGTCCGCCTCTGGTGGG TGTGGGCATGTGCTCCAACTTGGCGTGCACCCCGCTGTCGTGCGCCGGGG CGAACACATACACACACACACCAACCCAAACCAAAAAAATACTTTAAAAA CAATAATCTGCAGGAGCGACAAAAGGCGGCCAGGCTCTTCGCGTCGGACG CTGGCAGGGCCATGGCGAGGGACGTGGAGCGCCGGGCGACGGAGGCACGG ACGGCGGACGCTGTGGAGAAGGCCGCGCGGGAACTCACCCCAGCGCAGCT GGAGGTGTACGAGCAGCTGATAAACAAGTCCACATCTTTAGAGGAGGTGG AGAGGCTCAAAAAGCGTATTAAGGCCGGCTTGGCCCCGAATTCGGCGGAC GTTGCCGCTGCAGTGGCCGAGGGGAATGGCAATGCCAATAGCGCGGCCTT GAATGGGAATGGGGCGACTGTGGCGGCGGCGGCGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2234121..2237107-

>mRNA_S-ischiensis_contig8.19566.1 ID=mRNA_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1560bp|location=Sequence derived from alignment at S-ischiensis_contig8:2234121..2237107- (Schizocladia ischiensis KU_0333)
ATGAGGCTCACGGCGGACCTGATCTTGATGAGGCTCACGGCGGACCTGAT
CTTGCACGCCCGCGCCAGCATCAACCCTTGCAATGAGCGTGAGCTGGATC
TTCGTGGGTACAAGATACCCATGATCGAAAACCTGGGGCACGCCCGCGCC
AGCATCAACCCTTGCAATGAGCGTGAGCTGGATCTTCGTGGGTACAAGAT
ACCCATGATCGAAAACCTGGGGGCCACGCAAGACCAGTTCGACACGCTGG
ACCTCTCGGACAACGAGGTGCAAAAGGTGGACAACTTTGGGCGTACCCGG
CGCCTGTCCTCGGTCCTGCTCAACAACAACCACGTGTCCAAGATCGGGGC
GGACCTGGGCGGGCAGGTCCCCAACCTCACCACCCTGGTGCTGACCGGCA
ACAAGGTGAAGATGCTCAGCGAGATCGACGGCCTGGCGTCCTGCACGAAG
CTGGAGCTGCTGAGCCTCTGCGAGAACCCCGTGGCCCGGGAGCCCAACTA
CCGCCTCTACGTGATCAACAAGATGCCCTCCCTCAAGCTCCTGGACTACA
GAAAGGTCACGATTCAGGCCACGCAAGACCAGTTCGACACGCTGGACCTC
TCGGACAACGAGGTGCAAAAGGTGGACAACTTTGGGCGTACCCGGCGCCT
GTCCTCGGTCCTGCTCAACAACAACCACGTGTCCAAGATCGGGGCGGACC
TGGGCGGGCAGGTCCCCAACCTCACCACCCTGGTGCTGACCGGCAACAAG
GTGAAGATGCTCAGCGAGATCGACGGCCTGGCGTCCTGCACGAAGCTGGA
GCTGCTGAGCCTCTGCGAGAACCCCGTGGCCCGGGAGCCCAACTACCGCC
TCTACGTGATCAACAAGATGCCCTCCCTCAAGCTCCTGGACTACAGAAAG
GTCACGATTCAGGAGCGACAAAAGGCGGCCAGGCTCTTCGCGTCGGACGC
TGGCAGGGCCATGGCGAGGGACGTGGAGCGCCGGGCGACGGAGGCACGGA
CGGCGGACGCTGTGGAGAAGGCCGCGCGGGAACTCACCCCAGCGCAGCTG
GAGGTGTACGAGCAGCTGATAAACAAGTCCACATCTTTAGAGGAGGTGGA
GAGGCTCAAAAAGCGTATTAAGGCCGGCTTGGCCCCGAATTCGGCGGACG
TTGCCGCTGCAGTGGCCGAGGGGAATGGCAATGCCAATAGCGCGGCCTTG
AATGGGAATGGGGCGACTGTGGCGGCGGCGGCGGGAGAGCGACAAAAGGC
GGCCAGGCTCTTCGCGTCGGACGCTGGCAGGGCCATGGCGAGGGACGTGG
AGCGCCGGGCGACGGAGGCACGGACGGCGGACGCTGTGGAGAAGGCCGCG
CGGGAACTCACCCCAGCGCAGCTGGAGGTGTACGAGCAGCTGATAAACAA
GTCCACATCTTTAGAGGAGGTGGAGAGGCTCAAAAAGCGTATTAAGGCCG
GCTTGGCCCCGAATTCGGCGGACGTTGCCGCTGCAGTGGCCGAGGGGAAT
GGCAATGCCAATAGCGCGGCCTTGAATGGGAATGGGGCGACTGTGGCGGC
GGCGGCGGGA
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