mRNA_S-ischiensis_contig8.19566.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 250 bits (639), Expect = 1.290e-76 Identity = 135/230 (58.70%), Postives = 175/230 (76.09%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE--LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
MRLTAD+I+HARASINPC+ERELDLRGYKIPMIENLG TQDQFD +D SDNE++K+DNF R +RLSS+LL NNHVSKI DLG +PNL+ L+LT NK+ L+E+ GL +CTKL +LSL N V + YRLY+IN +PSLK LD++KVT++ER+ A RL S AG+AM +DV ++A +A+T AA E LT +Y I K+T++EE+E L K+I+AG+ P+
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 230
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 231 bits (589), Expect = 9.820e-70 Identity = 128/231 (55.41%), Postives = 169/231 (73.16%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE---LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
MRLTAD+IL A A+INPC ERELDLRGYKIP+IEN+GATQD FDT+D SDNE++K++NF R RL+++L NNNH+SKI + QVPNL+TL +++ L+E+D L KL LLSL ENPV R +YRLYVI++ P+LK LD+RKV QERQ+AARLF S AG+ M DV++ E +T A EK RE LT Q + + I +T+ EEV++L++++KAG+ PN
Sbjct: 1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQK---EIKTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPN 228
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 226 bits (576), Expect = 6.110e-67 Identity = 129/240 (53.75%), Postives = 173/240 (72.08%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP---NSADVAAAVA 864
MRLTAD+IL ARAS+N ERELDLRG+KIP+IEN+G TQDQFDT+D SDNE+QK+DNF R RL+++LL+NN +++IG D+G ++PNL+ LVLT N + +LSE+D L C +L +LSL ENPV R +YRLYVI+K+PSLK LD+ KV +ER +A RLF S AGRAM D+ A +A+T A LTPAQ +I ++ + EE++RL++ ++AG+ P D AAA A
Sbjct: 1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDI---ALQAKTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAA 237
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A4D9D4U7_9STRA (SAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4U7_9STRA) HSP 1 Score: 210 bits (535), Expect = 3.420e-61 Identity = 119/229 (51.97%), Postives = 169/229 (73.80%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGR----AMARDVERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGL 828
MR+TAD+++HARA +NP ERELDLRG KIP+IENLG TQDQFDT+DLSDNE++++DNF R RRL ++LL NN +++ G+ LG Q+ L LVLT NKV LSEID LAS TKL LSL +NPV R +YRLY+++K+P L +LD++KV ER+ A +LF S AG+ A+A + + A E+ T A EK R +T + + + +I+K+T+ EE+ER++++++AG+
Sbjct: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAES-TGKAREK--RVMTEEEKRLAQAMIDKATTPEELERVERQLRAGI 226
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA) HSP 1 Score: 206 bits (525), Expect = 4.320e-60 Identity = 114/231 (49.35%), Postives = 161/231 (69.70%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDV----ERRATEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
MRLT+D++L+A A +NPC+ERELDLRG KIP IEN+G TQD +DTLD +DNE++K++NF T+RLS +LL+NNHV I ++ ++P+L TLVLT NK+ LSE+D LA+C L LSL NPV R +YR YVI+K+P LK+LD+ K+ +ERQ+A RLF S AG+ M DV E EA TA E+ AQ+ I +++ +E++R+++++KAG+ P
Sbjct: 1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMAQLNEVDRAQVRAA---IAAASTPQEIDRIERQLKAGILP 228
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.440e-58 Identity = 111/229 (48.47%), Postives = 154/229 (67.25%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRA-TEARTADAVEKAARELTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
+RLTAD++ + A INPC +RELD+RG K+P IEN+G T+DQ+DTLD SDNE++K++NF R RLS++LLNNNH+++I LG Q+ +L LSE+D L CTKL LSL NPVAR +YRLYVI+K+PS+K+LD+ KV QER AARLF S AG+ M +DV+ A T D T Q+ +I +T+ EEV+R+++++KAG+ P+
Sbjct: 2 VRLTADVLQNCFARINPCLDRELDIRGLKVPAIENIGVTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKVKPQERADAARLFKSAAGKLMQQDVDAEASTFTPGEDMPSNPMANFTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPS 230
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: A0A3B3QBN1_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QBN1_9TELE) HSP 1 Score: 197 bits (502), Expect = 5.340e-58 Identity = 111/230 (48.26%), Postives = 158/230 (68.70%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELT---PAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
++L+A+LI A NP +RELDLRGYKIP++ENLGAT DQFDT+D S+NE++K+D F RRL ++L+NNN + +IG DL +PNL L+LT N ++ L ++D LAS L LLSL NPV + +YRLYVINK+P L++LD++KV ++ERQ+A ++F G +A+D+ +R T+ T A +A + T PA +E + I +TSL EVERLK ++AG P
Sbjct: 13 VKLSAELIEQAAQYTNPIRDRELDLRGYKIPVLENLGATLDQFDTIDFSENEIRKLDGFPLLRRLKTLLMNNNRICRIGEDLEQSLPNLKELILTNNSIQELGDLDPLASIKSLTLLSLLRNPVTNKKHYRLYVINKIPQLRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAKR-TKTFTPGANLQAEKRKTGPSPADVEAIKNAIASATSLAEVERLKGLLQAGQIP 241
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI001ED8687B (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8687B) HSP 1 Score: 196 bits (498), Expect = 7.420e-58 Identity = 109/229 (47.60%), Postives = 158/229 (69.00%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARELTPAQLEVYE--QLINKSTSLEEVERLKKRIKAGLAP 834
++LT +LI + INP +RELDLRGYKIP+IENLGAT DQFDT+D SDN+++K+D F +RL +LLNNN + +I L +PNL +L+LTGN ++ L++ID LA+ KL LSL NPV +P+YRLYV K+P+L+LLD+RK+ ++ER++A LF S G+ M R++ ++A + + PAQ +V + + I +++SLEEVERL + +KAGL P
Sbjct: 2 VKLTPELIQQSLQYINPVKDRELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCLLLNNNRIVRIAESLETTLPNLESLILTGNSIQELADIDPLATLKKLTTLSLLHNPVTTQPHYRLYVAFKLPNLRLLDFRKIKMKEREEANTLFKSKRGKEMQREMAKKAKTFVPGAGLSDTPKPSGPAQEDVRKIREAIARASSLEEVERLNRLLKAGLVP 230
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI000875976A (U2 small nuclear ribonucleoprotein A' n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000875976A) HSP 1 Score: 195 bits (496), Expect = 7.640e-58 Identity = 108/229 (47.16%), Postives = 155/229 (67.69%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEARTADAVEKAARE--LTPAQLEVYEQLINKSTSLEEVERLKKRIKAGLAP 834
++LTA+LI ++ INP +RELDLRGY+IP IENLGAT DQFDT+D SDN+++K+D F +RL +LLNNN + +IG L +PNL +L+LTGN++ L +ID L S KL LSL NPV + +YRLYVI ++P LKLLD+RK+ ++ER +A LF S G+ M +++ +RA + A+ L+ ++ INK++SLEEVERL+K +++G P
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTVDFSDNDIRKLDGFPYLKRLKCLLLNNNRIVRIGEHLEEYIPNLESLILTGNQIADLGDIDPLVSLEKLTTLSLMHNPVTAKQHYRLYVIYRLPQLKLLDFRKIKLKERDEARTLFKSKKGKEMQKEISKRAKTFVPGGGINNIAKNKGLSDEEVRKIRDAINKASSLEEVERLQKILQSGQIP 230
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Match: UPI00096B1E3E (probable U2 small nuclear ribonucleoprotein A' n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B1E3E) HSP 1 Score: 194 bits (494), Expect = 1.440e-57 Identity = 108/230 (46.96%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 154 MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDNEVQKVDNFGRTRRLSSVLLNNNHVSKIGADLGGQVPNLTTLVLTGNKVKMLSEIDGLASCTKLELLSLCENPVAREPNYRLYVINKMPSLKLLDYRKVTIQERQKAARLFASDAGRAMARDVERRATEART-ADAVEKAARELTPA-QLEVYEQLINKSTSLEEVERLKKRIKAGLAPN 837
++LTA+LI ++ INP +RELDLRGY+IP IENLGAT DQFDT+D S+N+++K+D F +RL +LLNNN + ++G L +PNL +L+LTGN + L +ID L + L LSL NPV E NYRLYVI K+P L+LLD+RK+ ++ER++A LF S G+ +++ R+ T D +EK + P+ ++ + INK++SLEEVERL+K ++AG P+
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTIDFSENDIRKLDGFPYLKRLKCLLLNNNRIVRLGEHLEEYIPNLESLILTGNHIDELGDIDPLVTLENLTTLSLLHNPVTAEANYRLYVIFKLPQLRLLDFRKIRMKEREEAKALFRSKKGKESLKEISNRSLNKGTNEDTLEKRVQNGPPSHEVRKIREAINKASSLEEVERLQKLLQAGQLPD 231 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19566.1 >prot_S-ischiensis_contig8.19566.1 ID=prot_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=260bp MRLTADLILHARASINPCNERELDLRGYKIPMIENLGATQDQFDTLDLSDback to top mRNA from alignment at S-ischiensis_contig8:2234121..2237107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19566.1 ID=mRNA_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2987bp|location=Sequence derived from alignment at S-ischiensis_contig8:2234121..2237107- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2234121..2237107- >mRNA_S-ischiensis_contig8.19566.1 ID=mRNA_S-ischiensis_contig8.19566.1|Name=mRNA_S-ischiensis_contig8.19566.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1560bp|location=Sequence derived from alignment at S-ischiensis_contig8:2234121..2237107- (Schizocladia ischiensis KU_0333)back to top |