mRNA_S-ischiensis_contig8.19526.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19526.1
Unique NamemRNA_S-ischiensis_contig8.19526.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19526.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.420e-20
Identity = 53/127 (41.73%), Postives = 58/127 (45.67%), Query Frame = 1 
Query:   67 AGYKMTLRTAGVREFHFLPLHSSWPLDAPESMFEAISTAAPAAXXXXXXXAAGDPGPLGHSTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNKDGAAVGLPVFVCVPGWHEPGHDPRHIWGGL 447
            AGYKMT RTAGV+EFHFLPLH+ WPLD+PESMFE  S                                                                 GLPVF+CVPGWHEPGHDPRHIWGG+
Sbjct:  566 AGYKMTRRTAGVQEFHFLPLHTEWPLDSPESMFEGASE---------------------------------------------------------------PGLPVFICVPGWHEPGHDPRHIWGGI 629
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHC2_9PHAE2.420e-2041.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1949819..1951246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817286.394641-CDS-S-ischiensis_contig8:1949818..19504541622817286.394641-CDS-S-ischiensis_contig8:1949818..1950454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1949819..1950454 -
1695740996.6341772-CDS-S-ischiensis_contig8:1949818..19504541695740996.6341772-CDS-S-ischiensis_contig8:1949818..1950454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1949819..1950454 -
1622817286.4060597-CDS-S-ischiensis_contig8:1951147..19512461622817286.4060597-CDS-S-ischiensis_contig8:1951147..1951246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1951148..1951246 -
1695740996.6454816-CDS-S-ischiensis_contig8:1951147..19512461695740996.6454816-CDS-S-ischiensis_contig8:1951147..1951246Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1951148..1951246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19526.1prot_S-ischiensis_contig8.19526.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1949819..1951246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19526.1

>prot_S-ischiensis_contig8.19526.1 ID=prot_S-ischiensis_contig8.19526.1|Name=mRNA_S-ischiensis_contig8.19526.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=245bp
AAAAAAGEAAFSALCGVGGAGVAGYKMTLRTAGVREFHFLPLHSSWPLDA
PESMFEAISTAAPAAAATAAAKAAGDPGPLGHSTSGGGGDGGGGDSGYAA
AAGVGDDTEEEDVGGGDNKDGAAVGLPVFVCVPGWHEPGHDPRHIWGGLG
CCAPAAAPLPLPSSGPPPPHPSPAPAGAAVAAAAAGVSETSPTPIAATAA
AATPMSSSSSSKGAPSSSPAGQGPARGHRPAAVDMPAASLRVGTG
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mRNA from alignment at S-ischiensis_contig8:1949819..1951246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19526.1 ID=mRNA_S-ischiensis_contig8.19526.1|Name=mRNA_S-ischiensis_contig8.19526.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1428bp|location=Sequence derived from alignment at S-ischiensis_contig8:1949819..1951246- (Schizocladia ischiensis KU_0333)
GCAGCCGCGGCGGCGGCGGGCGAGGCAGCCTTCTCCGCTCTGTGCGGCGT
GGGCGGAGCTGGCGTGGCAGGTTACAAGATGACGCTGCGGACGGCGGGGG
TGAGTGAGAGGCGTGTGCGAGAGCTGCACCCACCAAGTACAGGGTTGGCA
CGTAGAGGTTAGTTAGTGCCTAATTTGCCCTATTTTTGGTCTAGTTACCC
CGAATTGCCTCTAAGGGCCAAAAGGGCACCACTTAGGGGTGAAGTGCCAA
CCCTGGCCAAGTAGACCAGGCTTTCTGTCGCCCCGCAGTTTCCTTGCCGT
GCACGTGCTGTCGTCGCCCCTGCCCGAGCGGAGCCGCCGCCGCCTTCTGT
GCCGGCTGATTCACGCCGACGCCGGGCTTGACGCCCGTATACAGCGCTGT
ACAGTAGTGTACTGTAGCCACATCATTTTGTTCATATCCTTTCCTCGCGG
CCACAGGGCAGAACGCATGGCTTGCATGCGGTACTCTACGTTGTTACCCC
GGAACTTGGGAAACAGTGCCGCGCGGTCCGGGTGTTTGGGCGGTACGGCA
AGCACAGCGTAAAATCGTACGTACCTATGCTATTGTACAGTATACAGCAG
GGGCGCTCTTTCAAAAGTATCTCTTCAGAAGTTGAGGGTCTATCGACATG
CCGCGTGGAGCGCAAATTTGTTCCTGACCCAAGCAACGACGATGGCTTGG
CATGGAAGTGTGTCCTGACATGACTCGAGTGATGACGGCGGCGGCAACTC
ATGGCCCACCAGCGCAACGTGCCCCCCCCCCCCTCCGACAAGGTGCGGGA
GTTCCACTTCCTGCCCCTTCACTCCTCCTGGCCGCTGGACGCACCGGAGA
GCATGTTTGAGGCCATCTCCACCGCTGCCCCCGCCGCTGCGGCCACTGCC
GCCGCCAAGGCCGCTGGTGACCCTGGCCCGTTGGGCCACAGCACGAGTGG
CGGCGGCGGCGACGGCGGCGGCGGCGACAGCGGCTATGCGGCTGCGGCAG
GCGTGGGAGATGACACTGAGGAAGAGGACGTCGGCGGCGGGGACAACAAG
GACGGGGCGGCGGTGGGCCTGCCGGTGTTTGTGTGCGTCCCCGGGTGGCA
CGAGCCGGGGCACGACCCCCGCCACATCTGGGGCGGCCTGGGCTGCTGCG
CGCCCGCCGCGGCCCCACTGCCTCTCCCCTCGTCGGGTCCTCCTCCCCCT
CATCCTTCTCCTGCTCCTGCTGGTGCTGCGGTCGCGGCGGCAGCTGCAGG
GGTGTCGGAGACCAGCCCGACACCCATTGCCGCCACCGCCGCCGCCGCCA
CCCCCATGTCCTCTTCTTCCTCCTCAAAAGGCGCCCCGTCGTCCTCACCC
GCCGGGCAAGGCCCCGCAAGGGGTCACCGGCCGGCGGCGGTGGATATGCC
AGCGGCCTCGCTTCGCGTTGGGACGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1949819..1951246-

>mRNA_S-ischiensis_contig8.19526.1 ID=mRNA_S-ischiensis_contig8.19526.1|Name=mRNA_S-ischiensis_contig8.19526.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1470bp|location=Sequence derived from alignment at S-ischiensis_contig8:1949819..1951246- (Schizocladia ischiensis KU_0333)
GCAGCCGCGGCGGCGGCGGGCGAGGCAGCCTTCTCCGCTCTGTGCGGCGT
GGGCGGAGCTGGCGTGGCAGGTTACAAGATGACGCTGCGGACGGCGGGGG
CAGCCGCGGCGGCGGCGGGCGAGGCAGCCTTCTCCGCTCTGTGCGGCGTG
GGCGGAGCTGGCGTGGCAGGTTACAAGATGACGCTGCGGACGGCGGGGGT
GCGGGAGTTCCACTTCCTGCCCCTTCACTCCTCCTGGCCGCTGGACGCAC
CGGAGAGCATGTTTGAGGCCATCTCCACCGCTGCCCCCGCCGCTGCGGCC
ACTGCCGCCGCCAAGGCCGCTGGTGACCCTGGCCCGTTGGGCCACAGCAC
GAGTGGCGGCGGCGGCGACGGCGGCGGCGGCGACAGCGGCTATGCGGCTG
CGGCAGGCGTGGGAGATGACACTGAGGAAGAGGACGTCGGCGGCGGGGAC
AACAAGGACGGGGCGGCGGTGGGCCTGCCGGTGTTTGTGTGCGTCCCCGG
GTGGCACGAGCCGGGGCACGACCCCCGCCACATCTGGGGCGGCCTGGGCT
GCTGCGCGCCCGCCGCGGCCCCACTGCCTCTCCCCTCGTCGGGTCCTCCT
CCCCCTCATCCTTCTCCTGCTCCTGCTGGTGCTGCGGTCGCGGCGGCAGC
TGCAGGGGTGTCGGAGACCAGCCCGACACCCATTGCCGCCACCGCCGCCG
CCGCCACCCCCATGTCCTCTTCTTCCTCCTCAAAAGGCGCCCCGTCGTCC
TCACCCGCCGGGCAAGGCCCCGCAAGGGGTCACCGGCCGGCGGCGGTGGA
TATGCCAGCGGCCTCGCTTCGCGTTGGGACGGGCGTGCGGGAGTTCCACT
TCCTGCCCCTTCACTCCTCCTGGCCGCTGGACGCACCGGAGAGCATGTTT
GAGGCCATCTCCACCGCTGCCCCCGCCGCTGCGGCCACTGCCGCCGCCAA
GGCCGCTGGTGACCCTGGCCCGTTGGGCCACAGCACGAGTGGCGGCGGCG
GCGACGGCGGCGGCGGCGACAGCGGCTATGCGGCTGCGGCAGGCGTGGGA
GATGACACTGAGGAAGAGGACGTCGGCGGCGGGGACAACAAGGACGGGGC
GGCGGTGGGCCTGCCGGTGTTTGTGTGCGTCCCCGGGTGGCACGAGCCGG
GGCACGACCCCCGCCACATCTGGGGCGGCCTGGGCTGCTGCGCGCCCGCC
GCGGCCCCACTGCCTCTCCCCTCGTCGGGTCCTCCTCCCCCTCATCCTTC
TCCTGCTCCTGCTGGTGCTGCGGTCGCGGCGGCAGCTGCAGGGGTGTCGG
AGACCAGCCCGACACCCATTGCCGCCACCGCCGCCGCCGCCACCCCCATG
TCCTCTTCTTCCTCCTCAAAAGGCGCCCCGTCGTCCTCACCCGCCGGGCA
AGGCCCCGCAAGGGGTCACCGGCCGGCGGCGGTGGATATGCCAGCGGCCT
CGCTTCGCGTTGGGACGGGC
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