mRNA_S-ischiensis_contig8.19470.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19470.1
Unique NamemRNA_S-ischiensis_contig8.19470.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5K5W5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.390e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
            M+HR+ +EAL  T+ DL  T  D  FGGK +LFSGDWRQ GP++K G A + V A+ +SS LW  + R+ LT
Sbjct:   41 MTHRYCIEALDRTMKDL--TKIDKLFGGKTILFSGDWRQTGPIVKNGSATDTVDAAFISSVLWTNVHRMKLT 110          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.430e-14
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
            M+HR+ VEAL  TL DLM    D  FGGK +LFSGDWRQ GP++K G   + V A+++SS  W  I+RL LT
Sbjct:   36 MTHRYCVEALDRTLKDLMRN--DRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKHISRLRLT 105          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.700e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
            M+HR+ VEAL  TL DLM    D PFGGK +LFSGDWRQ GP++K     + V A+ +SS LW  + R  L
Sbjct:   90 MTHRYCVEALDRTLKDLMAV--DQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLWKGVMRFRL 158          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI0010358BC7 (uncharacterized protein LOC114308811 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010358BC7)

HSP 1 Score: 68.6 bits (166), Expect = 5.560e-11
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
            M++R+A EAL+ TL+D+  T  D PFGGKI++F GD+RQ  PV+  G   E + AS+V S+LW  I +L L
Sbjct:    1 MTNRYAFEALNRTLIDI--TGVDYPFGGKIMVFGGDFRQVLPVVPKGTKAETIVASIVKSSLWSHIQKLRL 69          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI0019D65529 (uncharacterized protein LOC120698589 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D65529)

HSP 1 Score: 70.1 bits (170), Expect = 1.080e-10
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
            M+ R AVEAL N+L D+M+  P++PFGGK V+F GD+RQ  PV++ G   +++ ASL  S LWG +  L L
Sbjct:  334 MTKRQAVEALDNSLCDIMDQ-PEMPFGGKTVVFGGDFRQVLPVVRKGSRAQIIDASLRRSYLWGSMRHLKL 403          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI000B78C31F (uncharacterized protein LOC110667308 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78C31F)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-10
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLTI 219
            M+ R+A+E +H T  ++M+ +   PFGGK+++F GD+RQ  PV+  G   E+VSASLV S LW K+  L LT+
Sbjct:    1 MAKRFAIETVHRTFTNIMDNSK--PFGGKVIVFGGDFRQVLPVVPRGTRQEIVSASLVKSYLWRKMELLRLTM 71          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A3L6DW12_MAIZE (ATP-dependent DNA helicase (Fragment) n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6DW12_MAIZE)

HSP 1 Score: 70.1 bits (170), Expect = 1.360e-10
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMET----TPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
            M+HR+A EAL  +  D++ T    T D+PFGGK+++  GD+RQ  PVI+ G   E+V+A++++SALW  +  L LT
Sbjct:  596 MTHRFAFEALDRSFRDILATSSPATRDLPFGGKVIVLGGDFRQTLPVIEGGSRSEIVNAAIINSALWSHVHILHLT 671          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI000900EA44 (ATP-dependent DNA helicase RRM3-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900EA44)

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-10
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSS-ALWGKITRLSL 213
            M++ WA+E++  TL D+M+T  D  FGGK+V+F GD+RQ  PVI++G+  + + ASLV S ++W  I RL L
Sbjct:   85 MANHWAIESVDTTLRDIMDT--DQIFGGKVVVFGGDFRQTLPVIRYGKKEDFIEASLVKSPSIWPNIQRLKL 154          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI001036E51E (ATP-dependent DNA helicase PIF1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036E51E)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-10
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
            M++R+A EAL+ TL+D+  T  D PFGGKI++F GD+RQ  PV+  G   E ++AS+V S LW  I  + L
Sbjct:   18 MTNRYAFEALNQTLIDI--TGVDYPFGGKIMVFGGDFRQVLPVVPKGTKAETITASIVKSPLWSHIQIIRL 86          
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A0C4FAH5_PUCT1 (ATP-dependent DNA helicase n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4FAH5_PUCT1)

HSP 1 Score: 69.3 bits (168), Expect = 2.600e-10
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 HRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
            HR+++EA++ TL+ L E+  D+ FGGK+V+FSGD+RQ  PV+K+ + P    A+L SSA+W  +++  LT
Sbjct:  957 HRYSIEAVNRTLMRLCES--DLAFGGKVVIFSGDFRQILPVVKYNQYPPAYCATLKSSAIWQTVSKFELT 1024          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5W5_9PHAE3.390e-1451.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0V2_9PHAE7.430e-1454.17ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J9C5_9PHAE6.700e-1352.11ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI0010358BC75.560e-1149.30uncharacterized protein LOC114308811 n=1 Tax=Camel... [more]
UPI0019D655291.080e-1049.30uncharacterized protein LOC120698589 n=1 Tax=Panic... [more]
UPI000B78C31F1.200e-1046.58uncharacterized protein LOC110667308 n=1 Tax=Hevea... [more]
A0A3L6DW12_MAIZE1.360e-1044.74ATP-dependent DNA helicase (Fragment) n=3 Tax=Zea ... [more]
UPI000900EA442.300e-1047.22ATP-dependent DNA helicase RRM3-like n=1 Tax=Ipomo... [more]
UPI001036E51E2.390e-1047.89ATP-dependent DNA helicase PIF1-like n=1 Tax=Camel... [more]
A0A0C4FAH5_PUCT12.600e-1045.71ATP-dependent DNA helicase n=1 Tax=Puccinia tritic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1655247..1655832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.1e-10
Seed eggNOG ortholog2880.D8LEP4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size297
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.8898933-UTR-S-ischiensis_contig8:1655246..16555351622817283.8898933-UTR-S-ischiensis_contig8:1655246..1655535Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1655247..1655535 -
1695740994.8823102-UTR-S-ischiensis_contig8:1655246..16555351695740994.8823102-UTR-S-ischiensis_contig8:1655246..1655535Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1655247..1655535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.9010797-CDS-S-ischiensis_contig8:1655535..16558321622817283.9010797-CDS-S-ischiensis_contig8:1655535..1655832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1655536..1655832 -
1695740994.8968496-CDS-S-ischiensis_contig8:1655535..16558321695740994.8968496-CDS-S-ischiensis_contig8:1655535..1655832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1655536..1655832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19470.1prot_S-ischiensis_contig8.19470.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1655536..1655832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19470.1

>prot_S-ischiensis_contig8.19470.1 ID=prot_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp
MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAP
EVVSASLVSSALWGKITRLSLTICVIVAIPYTRLRECRTRGQNSTRAD*
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mRNA from alignment at S-ischiensis_contig8:1655247..1655832-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19470.1 ID=mRNA_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=586bp|location=Sequence derived from alignment at S-ischiensis_contig8:1655247..1655832- (Schizocladia ischiensis KU_0333)
ATGTCACACAGATGGGCCGTTGAGGCTCTTCACAACACACTCGTCGACCT CATGGAGACAACCCCCGACGTGCCTTTCGGCGGCAAGATTGTGCTCTTTT CCGGCGATTGGCGTCAGCGCGGCCCGGTCATCAAGTTCGGCGAGGCCCCG GAGGTGGTCAGTGCTTCTCTCGTCTCGTCCGCCCTCTGGGGAAAAATCAC ACGTCTTAGTTTAACCATTTGCGTGATCGTAGCGATCCCTTATACGCGGC TTCGTGAGTGCCGTACGCGAGGACAAAATTCCACACGTGCAGACTGACGA CGGTTGCCGTCTCGTCCCCCTGTCACATGCCACATCTTCGAACGTGCCCC CTGCTGCAGATGCGTCTTCTTCTGCAACTCCCCCCCCTACATGTACAGTT GCCACCACCGATGGCTTCCAGCACCTCATTAACTTCGTCTACCCATATAT TCTCACTGCCCCCCCTCAGACATTCGCGGACCGAGCTATCCTGTCCCCGC TCAACACCAGCATTGATGATATTAACAACCACATCCTCGAAAAACTGCCG CACCCCCAACGAACACTCAAGAGCTATGATTTCGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1655247..1655832-

>mRNA_S-ischiensis_contig8.19470.1 ID=mRNA_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig8:1655247..1655832- (Schizocladia ischiensis KU_0333)
ATGTCACACAGATGGGCCGTTGAGGCTCTTCACAACACACTCGTCGACCT
CATGGAGACAACCCCCGACGTGCCTTTCGGCGGCAAGATTGTGCTCTTTT
CCGGCGATTGGCGTCAGCGCGGCCCGGTCATCAAGTTCGGCGAGGCCCCG
GAGGTGGTCAGTGCTTCTCTCGTCTCGTCCGCCCTCTGGGGAAAAATCAC
ACGTCTTAGTTTAACCATTTGCGTGATCGTAGCGATCCCTTATACGCGGC
TTCGTGAGTGCCGTACGCGAGGACAAAATTCCACACGTGCAGACTGAATG
TCACACAGATGGGCCGTTGAGGCTCTTCACAACACACTCGTCGACCTCAT
GGAGACAACCCCCGACGTGCCTTTCGGCGGCAAGATTGTGCTCTTTTCCG
GCGATTGGCGTCAGCGCGGCCCGGTCATCAAGTTCGGCGAGGCCCCGGAG
GTGGTCAGTGCTTCTCTCGTCTCGTCCGCCCTCTGGGGAAAAATCACACG
TCTTAGTTTAACCATTTGCGTGATCGTAGCGATCCCTTATACGCGGCTTC
GTGAGTGCCGTACGCGAGGACAAAATTCCACACGTGCAGACTGA
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