mRNA_S-ischiensis_contig8.19470.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5K5W5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W5_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 3.390e-14 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
M+HR+ +EAL T+ DL T D FGGK +LFSGDWRQ GP++K G A + V A+ +SS LW + R+ LT
Sbjct: 41 MTHRYCIEALDRTMKDL--TKIDKLFGGKTILFSGDWRQTGPIVKNGSATDTVDAAFISSVLWTNVHRMKLT 110
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 7.430e-14 Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
M+HR+ VEAL TL DLM D FGGK +LFSGDWRQ GP++K G + V A+++SS W I+RL LT
Sbjct: 36 MTHRYCVEALDRTLKDLMRN--DRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKHISRLRLT 105
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 6.700e-13 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
M+HR+ VEAL TL DLM D PFGGK +LFSGDWRQ GP++K + V A+ +SS LW + R L
Sbjct: 90 MTHRYCVEALDRTLKDLMAV--DQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLWKGVMRFRL 158
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI0010358BC7 (uncharacterized protein LOC114308811 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010358BC7) HSP 1 Score: 68.6 bits (166), Expect = 5.560e-11 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
M++R+A EAL+ TL+D+ T D PFGGKI++F GD+RQ PV+ G E + AS+V S+LW I +L L
Sbjct: 1 MTNRYAFEALNRTLIDI--TGVDYPFGGKIMVFGGDFRQVLPVVPKGTKAETIVASIVKSSLWSHIQKLRL 69
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI0019D65529 (uncharacterized protein LOC120698589 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D65529) HSP 1 Score: 70.1 bits (170), Expect = 1.080e-10 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
M+ R AVEAL N+L D+M+ P++PFGGK V+F GD+RQ PV++ G +++ ASL S LWG + L L
Sbjct: 334 MTKRQAVEALDNSLCDIMDQ-PEMPFGGKTVVFGGDFRQVLPVVRKGSRAQIIDASLRRSYLWGSMRHLKL 403
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI000B78C31F (uncharacterized protein LOC110667308 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78C31F) HSP 1 Score: 69.7 bits (169), Expect = 1.200e-10 Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLTI 219
M+ R+A+E +H T ++M+ + PFGGK+++F GD+RQ PV+ G E+VSASLV S LW K+ L LT+
Sbjct: 1 MAKRFAIETVHRTFTNIMDNSK--PFGGKVIVFGGDFRQVLPVVPRGTRQEIVSASLVKSYLWRKMELLRLTM 71
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A3L6DW12_MAIZE (ATP-dependent DNA helicase (Fragment) n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6DW12_MAIZE) HSP 1 Score: 70.1 bits (170), Expect = 1.360e-10 Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMET----TPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
M+HR+A EAL + D++ T T D+PFGGK+++ GD+RQ PVI+ G E+V+A++++SALW + L LT
Sbjct: 596 MTHRFAFEALDRSFRDILATSSPATRDLPFGGKVIVLGGDFRQTLPVIEGGSRSEIVNAAIINSALWSHVHILHLT 671
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI000900EA44 (ATP-dependent DNA helicase RRM3-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900EA44) HSP 1 Score: 68.2 bits (165), Expect = 2.300e-10 Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSS-ALWGKITRLSL 213
M++ WA+E++ TL D+M+T D FGGK+V+F GD+RQ PVI++G+ + + ASLV S ++W I RL L
Sbjct: 85 MANHWAIESVDTTLRDIMDT--DQIFGGKVVVFGGDFRQTLPVIRYGKKEDFIEASLVKSPSIWPNIQRLKL 154
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: UPI001036E51E (ATP-dependent DNA helicase PIF1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036E51E) HSP 1 Score: 66.2 bits (160), Expect = 2.390e-10 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSL 213
M++R+A EAL+ TL+D+ T D PFGGKI++F GD+RQ PV+ G E ++AS+V S LW I + L
Sbjct: 18 MTNRYAFEALNQTLIDI--TGVDYPFGGKIMVFGGDFRQVLPVVPKGTKAETITASIVKSPLWSHIQIIRL 86
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Match: A0A0C4FAH5_PUCT1 (ATP-dependent DNA helicase n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4FAH5_PUCT1) HSP 1 Score: 69.3 bits (168), Expect = 2.600e-10 Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 7 HRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPEVVSASLVSSALWGKITRLSLT 216
HR+++EA++ TL+ L E+ D+ FGGK+V+FSGD+RQ PV+K+ + P A+L SSA+W +++ LT
Sbjct: 957 HRYSIEAVNRTLMRLCES--DLAFGGKVVIFSGDFRQILPVVKYNQYPPAYCATLKSSAIWQTVSKFELT 1024 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19470.1 >prot_S-ischiensis_contig8.19470.1 ID=prot_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=99bp MSHRWAVEALHNTLVDLMETTPDVPFGGKIVLFSGDWRQRGPVIKFGEAPback to top mRNA from alignment at S-ischiensis_contig8:1655247..1655832- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19470.1 ID=mRNA_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=586bp|location=Sequence derived from alignment at S-ischiensis_contig8:1655247..1655832- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1655247..1655832- >mRNA_S-ischiensis_contig8.19470.1 ID=mRNA_S-ischiensis_contig8.19470.1|Name=mRNA_S-ischiensis_contig8.19470.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=594bp|location=Sequence derived from alignment at S-ischiensis_contig8:1655247..1655832- (Schizocladia ischiensis KU_0333)back to top |