mRNA_S-ischiensis_contig73.18620.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18620.1
Unique NamemRNA_S-ischiensis_contig73.18620.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 3.950e-78
Identity = 133/233 (57.08%), Postives = 163/233 (69.96%), Query Frame = 2
Query:  125 VDAAVALLSDNYRAELGATSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATGSLE----------GANTTGLAALPLHAEVALQVFDLSLRDSEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQEARQQAANQSWPEPTLPEGVTSVPGFPGAGTYGAALYLAECLAR 793
            V  A  LL +NYR EL AT PS  +D  Q ST S++V+ AWAHVDQ RARAE LSIF GQ E+GLVPT R++ GY+A +LGG+ LPGPG W   S +          GANT+ LAA+PLHAE AL++FDLS RD+EARLWLQ  FP LF++H YLH  R DP TGLVYV+HPWET +  DS LW  LL +AR QA  +SW  P +P  V+SV GFPG   + AA++L++C AR
Sbjct:   59 VQGAAGLLLENYRDELEATIPSPLIDAHQESTTSVMVAEAWAHVDQQRARAELLSIFRGQWENGLVPTVRYAPGYEADFLGGSFLPGPGGWGGRSSDKNASSAQSAGGANTSSLAAIPLHAEAALRIFDLSPRDAEARLWLQDLFPALFRYHDYLHGSRNDPETGLVYVHHPWETEVSADSALWPSLLADARAQATKESWVPPPIPSSVSSVAGFPGKKAFQAAIFLSDCSAR 291          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A4D9DAW9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAW9_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.890e-39
Identity = 95/229 (41.48%), Postives = 131/229 (57.21%), Query Frame = 2
Query:  125 VDAAVALLSDNYRAELGATSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQRE-DGLVPTARFSRGYD-APYLGGTLLPGPGAWAT---GSLEGANTTGLAALPLHAEVALQVFDLSLRDSEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQEARQQAANQSWPEPTLP-EGVTSVPGFPGAGTYGAALYLAECLAR 793
            +D A  LL  N+ AE G T PS    P+  ST+SL  ++A+A  D      E ++   GQ    GLVP  RF    + + +L GT  PGP  W T   GS    +T GLAALP HA VA+Q+F++  RD     +L Q FP +FK+H+YLHT R D +  LV+ YHPWE+ LP DSP+W   L   +++ A ++W  P +P +   + PG+PG   +G  LYL E +AR
Sbjct:   34 LDKAKTLLLTNFDAEQGWTVPSKATAPYLDSTSSLFTAYAYAKFDPDAGMKELIACLSGQWPFTGLVPRIRFPPSSEGSAWLEGTYYPGPAQWQTPRDGSAAALSTAGLAALPWHAIVAMQLFNVR-RDDAGLSFLAQVFPPIFKYHQYLHTSR-DAKNHLVFSYHPWESELPGDSPVWSAALAATKERVAAEAW-SPRVPLDEPAAAPGYPGDDVFGPELYLVELMAR 259          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A7S2SBS2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBS2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.070e-23
Identity = 88/264 (33.33%), Postives = 126/264 (47.73%), Query Frame = 2
Query:   68 LVVTYILWFCPGSVWAGVAVDAAVALLSDNYRAELGATSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAP-YLGGTLLPGPGAWATGSL-------EGAN----TTGLAALPLHAEVALQVFDLSLRDSEARLWLQQAFPLLFKWHKYLHTQ-RADPRTGLVYVYHPWETTLPLDSPLWEPLLQEARQQAANQSWPEPTLPEGVTSVPGFPGAGTYGAALYLAECLARQTPSASSHD 820
            L+V  +  FC  +    VA  A + +L +N+ +    T P +       + ASL+   A A  D  RA+AEF ++   Q + G++P   +S       +L  +L PGP  W  G         EG      T+GLAALP+H+ VALQ++     +SE   +L +    L +WH YLH+  RAD   GL  +YHPWE  LP+ S L   L++     +  Q       P  V ++PG+PG  TY   L L ECL     SA   D
Sbjct:   55 LLVFCLCSFCSPTRPCDVAGPARM-VLEENWASSEQWTRPFANSSNMADALASLLSCHALAKSDWKRAKAEFNTLLSYQWQSGMLPKLMYSMELSRVLWLNDSLYPGPQWWWNGQTVARRLAEEGQESSSLTSGLAALPMHSTVALQMYAAQGSNSEGLDFLNEVHGRLMEWHSYLHSPPRADASDGLTLLYHPWEAELPMASSLAAQLVEGLSADSGAQ-----LPPASVQTLPGYPGNSTYARDLGLLECLRHVNYSAPCAD 312          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A835Z1J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.150e-23
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 2
Query:  242 AWAHVDQLRARAEFLSIFEGQREDGLVPTARF-------SRGYDAPYLGGTLLPGPGAW-ATGSLEGANTTGLAALPLHAEVALQVFDLSLRDSEARLWLQQAFPLLFKWHKYLHTQRA 574
            A AH DQ RA+AE +++   Q + G +P+ARF       S   +  ++ GT LPGP  W       G NTT LAALPLHA VALQV+ LS R ++ARLWLQQ FP L++WH +LH  RA
Sbjct:    9 ALAHSDQARAQAEVVAVLNSQWDSGFIPSARFPAESANSSGSGNNDWVEGTALPGPRFWRGCVGRNGDNTTALAALPLHAHVALQVYALSDRGADARLWLQQIFPALYRWHAHLHAVRA 127          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A2W6BMW9_9ACTN (Glycogen debranching protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6BMW9_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 3.320e-16
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 2
Query:  203 PFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATG-----SLEGANTTGLAALPLHAEVALQVFDLSLRDS----EARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLL 658
            P Q S  +  V+  WAH+D  RA  E  S+F  Q   G+VP   F    D      +  PGP  W  G        G  T+G+   P+HA    +V++ +  D     +AR  L   FP + +WH+YL TQR   ++GLV +YHPWE+    ++P W+ +L
Sbjct:   35 PHQWSWDAAFVAVGWAHIDVSRAFTELESLFAAQWSTGMVPHIVF----DPATALDSYFPGPQRWGCGVSTDAPAPGPATSGICQPPVHAVALARVWEKATTDQGCIEDARRRLGWLFPRMLRWHRYLMTQRDPEQSGLVSIYHPWESGAD-NAPRWDAVL 190          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A7W1J2C8_9ACTN (Beta-fructofuranosidase n=1 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A7W1J2C8_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 3.730e-16
Identity = 70/209 (33.49%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  203 PFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATGSLEG-------ANTTGLAALPLHAEVALQVFDLSLRD-----SEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQEARQQAANQSWPEPTLPEGVTSVPGFPGAGTYGAALYLAECLAR 793
            P Q S  S  ++   A +D  RA  E +S+F+ Q   G VP   F++   AP    +  PGP  W T + E        A T+GL   P+HA  AL++++++L       +EAR +L   +P LF WH+YL T R    +GLV +YHPWE+    +SP W   L+   +       P P L  GVT     P    Y   ++L E + R
Sbjct:   56 PHQWSWDSAFIAIGLAQLDTGRAARELVSLFDHQWATGKVPHIVFNQ--KAPPE--SYFPGPEHWVTAAPESPDAPPTPALTSGLCQPPVHAIAALRIWEVALERGGEALAEARAFLYDIYPKLFAWHRYLATTRDPEGSGLVTIYHPWESGTD-NSPRWNGALERV-EVGELPPHPRPDL-LGVTDPSQRPTEEKYARYIWLVELIKR 257          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A6J4PCC8_9ACTN (GH63 n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4PCC8_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-15
Identity = 62/183 (33.88%), Postives = 94/183 (51.37%), Query Frame = 2
Query:  134 AVALLSDNYRAELGATSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATGSLEG---ANTTGLAALPLHAEVALQVFDLSLRDSE----ARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQ 661
            A A+L +N        SP+ +  P Q S  S  ++   AH+D +RA  E  S+ + Q E+G +P   F+   +AP    +  PGP  WA+ +      A T+GL   P+HA  AL++  ++    E    AR +L + +P L  WH+YL T R    +GLV +YHPWE+    +SP W   L+
Sbjct:   10 AAAVLRENDMGTWTRASPTLY--PHQWSWDSAFIAIGLAHLDTVRAAGEIRSLLDHQWENGKIPHIIFNP--EAPPE--SYFPGPEHWASAAAAPDIPAMTSGLCQPPVHAFAALRILQIAEARGEGAAGAREFLAEVYPKLLAWHRYLATARDPEGSGLVTIYHPWESGTD-NSPRWTGALE 185          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A418MTP4_9ACTN (Uncharacterized protein n=2 Tax=Micromonospora radicis TaxID=1894971 RepID=A0A418MTP4_9ACTN)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-15
Identity = 62/172 (36.05%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  179 TSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGY-DAPYLGGTLLPGPGAWATGSLEGAN---TTGLAALPLHAEVALQVFDLSLRDSEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQEARQQAA 682
            T PS  + P Q S  S  ++  WAH    R  +E  S+F+ Q  DG VP   F+    DA Y      PGPG WATGS++ A    T+GL   P+HA  A   +  +  D +AR  L + +P L     YL + R     GLV + HPWE+ L  +SP W+  +     +AA
Sbjct:   15 TVPSRTLYPHQWSWDSAFIAIGWAHARPERVWSELTSLFDAQWRDGRVPHIVFNPAVSDAAYF-----PGPGFWATGSVDAAPPTATSGLVQPPVHALAAWHAYRRAPSD-QARAALARLYPRLVAQQHYLASHRDVGGAGLVSIVHPWESGLD-NSPAWDDPMAAVPAEAA 179          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A838JQN1_9ACTN (Beta-fructofuranosidase n=1 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A838JQN1_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 2.960e-15
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 2
Query:  173 GATSPSSFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATGSLEG-------ANTTGLAALPLHAEVALQVFDLSLRD-----SEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQ 661
            G T  S  + P Q S  S  ++   AH+D  RA  E +++F+ Q   G VP   F+   +AP    +  PGP  WAT + +        A+T+GL   P+HA     +++ +        +EAR +L++ +P LF WH+YL T R    +GLV +YHPWE+    +SP W   L+
Sbjct:   32 GWTKASPGLYPHQWSWDSAFIAVGLAHLDTRRAAQELVTLFDHQWATGKVPHIVFNM--EAPP--DSYYPGPEHWATAAPDSPDAPPTPAHTSGLCQPPVHAIAVRHIWEAAGNGGEDVLAEARGFLEELYPKLFAWHQYLATTRDPEESGLVTIYHPWESGTD-NSPRWNAALE 201          
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Match: A0A7W1P7C0_9BACT (Glycogen debranching protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1P7C0_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 3.300e-14
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  203 PFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFSRGYDAPYLGGTLLPGPGAWATGSLEG-------ANTTGLAALPLHAEVALQVFDLSLRD-----SEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSPLWEPLLQ 661
            P Q S  S  ++  WAH+D  RA  E  ++F+ Q   G +P   F+   +AP    +  PG   WA  + +        A T+GL   P+HA    ++++++        ++AR +L++ +P LF WH+YL T R    +GLV +YHPWE+    +SP W   L+
Sbjct:   39 PHQWSWDSAFIAVGWAHLDTRRAARELETLFDHQWATGKIPHIVFNM--EAPPE--SYFPGAEHWAAAAPDSPDAPPTPARTSGLCQPPVHAMAVRRIWEVAGNRGGEALAQARGFLEELYPKLFAWHRYLATIRDPEESGLVTIYHPWESGTD-NSPRWNGALE 198          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKU2_ECTSI3.950e-7857.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DAW9_9STRA8.890e-3941.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2SBS2_9STRA2.070e-2333.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z1J8_9STRA3.150e-2349.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2W6BMW9_9ACTN3.320e-1634.16Glycogen debranching protein n=1 Tax=Acidimicrobia... [more]
A0A7W1J2C8_9ACTN3.730e-1633.49Beta-fructofuranosidase n=1 Tax=Rubrobacteraceae b... [more]
A0A6J4PCC8_9ACTN1.120e-1533.88GH63 n=1 Tax=uncultured Rubrobacteraceae bacterium... [more]
A0A418MTP4_9ACTN1.880e-1536.05Uncharacterized protein n=2 Tax=Micromonospora rad... [more]
A0A838JQN1_9ACTN2.960e-1533.71Beta-fructofuranosidase n=1 Tax=Rubrobacteraceae b... [more]
A0A7W1P7C0_9BACT3.300e-1432.12Glycogen debranching protein n=1 Tax=Acidobacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:115293..118521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.3
Seed ortholog evalue7.8e-69
Seed eggNOG ortholog2880.D8LKU2
EggNOG OGs28RAS@1,2QXZV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size862
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18620.1prot_S-ischiensis_contig73.18620.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 115293..118481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.897762-CDS-S-ischiensis_contig73:115292..1154851622817201.897762-CDS-S-ischiensis_contig73:115292..115485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 115293..115485 -
1695740931.8513064-CDS-S-ischiensis_contig73:115292..1154851695740931.8513064-CDS-S-ischiensis_contig73:115292..115485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 115293..115485 -
1622817201.9108698-CDS-S-ischiensis_contig73:116660..1168371622817201.9108698-CDS-S-ischiensis_contig73:116660..116837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 116661..116837 -
1695740931.8697314-CDS-S-ischiensis_contig73:116660..1168371695740931.8697314-CDS-S-ischiensis_contig73:116660..116837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 116661..116837 -
1622817201.922948-CDS-S-ischiensis_contig73:117906..1181241622817201.922948-CDS-S-ischiensis_contig73:117906..118124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 117907..118124 -
1695740931.8818674-CDS-S-ischiensis_contig73:117906..1181241695740931.8818674-CDS-S-ischiensis_contig73:117906..118124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 117907..118124 -
1622817201.936196-CDS-S-ischiensis_contig73:118247..1184811622817201.936196-CDS-S-ischiensis_contig73:118247..118481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 118248..118481 -
1695740931.8925025-CDS-S-ischiensis_contig73:118247..1184811695740931.8925025-CDS-S-ischiensis_contig73:118247..118481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 118248..118481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.947181-UTR-S-ischiensis_contig73:118481..1185211622817201.947181-UTR-S-ischiensis_contig73:118481..118521Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 118482..118521 -
1695740931.90327-UTR-S-ischiensis_contig73:118481..1185211695740931.90327-UTR-S-ischiensis_contig73:118481..118521Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 118482..118521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18620.1

>prot_S-ischiensis_contig73.18620.1 ID=prot_S-ischiensis_contig73.18620.1|Name=mRNA_S-ischiensis_contig73.18620.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=274bp
MLSVSGRWDLVVTYILWFCPGSVWAGVAVDAAVALLSDNYRAELGATSPS
SFVDPFQASTASLVVSWAWAHVDQLRARAEFLSIFEGQREDGLVPTARFS
RGYDAPYLGGTLLPGPGAWATGSLEGANTTGLAALPLHAEVALQVFDLSL
RDSEARLWLQQAFPLLFKWHKYLHTQRADPRTGLVYVYHPWETTLPLDSP
LWEPLLQEARQQAANQSWPEPTLPEGVTSVPGFPGAGTYGAALYLAECLA
RQTPSASSHDLAAEAPVAEVEGRG
back to top

mRNA from alignment at S-ischiensis_contig73:115293..118521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18620.1 ID=mRNA_S-ischiensis_contig73.18620.1|Name=mRNA_S-ischiensis_contig73.18620.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3229bp|location=Sequence derived from alignment at S-ischiensis_contig73:115293..118521- (Schizocladia ischiensis KU_0333)
CTGAAGCCTGTAGGTAGCCGAGCTTGCATGGCTCGAAAACATGCTGAGCG TGAGCGGTAGGTGGGATCTTGTTGTGACGTACATACTATGGTTCTGCCCC GGCTCTGTGTGGGCGGGGGTGGCAGTGGATGCGGCTGTAGCCCTACTTAG TGACAACTATCGCGCTGAGCTGGGTGCAACCTCTCCGTCCAGTTTCGTTG ACCCCTTCCAAGCCAGCACGGCCTCGTTGGTGGTGTCTTGGGCGTGGGCC CACGTGGACCAGCTTCGCGCGCGGGTGGGTGCCCCGATGGAGTCCTTGAG GGGCACAGATGCACGCCGACAGCTGTGAAAAACGCGCGGTCCGCCCCCCG GGGGCAAGTTGAATATCCCCGTATTCCGTAACCCTCCCCCCTCACAGGCG GAGTTCCTGTCCATCTTCGAGGGGCAACGGGAGGATGGACTCGTCCCGAC GGCTCGCTTCTCTCGAGGCTACGACGCCCCCTACCTGGGCGGCACGCTGC TCCCGGGCCCGGGCGCCTGGGCCACGGGATCCTTGGAAGGCGCCAACACG ACAGGCTTGGCGGCGCTGCCGCTGCACGCAGAGGTTGCCCTGCAGGTCTT TGACCTCTCCCTCAGGTGCGAAGCCTGTTTAGCACCGATGGCTGCCGCTG GTACTTGCTGCCCATTTGTACCTTTGCTCTACTACCATGTACTCGTACTG TACAGGGTGCAAGTACTTGTACAGTCGCGAGCACGACATGCACTTGCGTC GAAATGCACCTGGCGAGCATGCACTTGCGTTGAAATGCACCTGGCGAGGG CTGTGCTGCAAGCTGGTGCAGTGGGTGAGCCCGCCTACCCGTTCGAACTC CTGCGGTTTAGTGTTGTGGCAATATGCATTACTTCCCCTCCGAGCTGAGG AAGGGCCACGTGGCCTGCACCTTGCCCTGTGTTCTTCCTGTGATTCATAT CATGGTTGTGCTTTAGTTGATACCGCCGCTGGTAAGCGGTTTGATGCTTA CTTGGTGGAGCAGTATCCAGCACATGCAGTTGCAGTACAGTACTCTCCCC TCCCACCCTGGCCACTTCAGGGGAGGGAGGGGACCTGCTCCGTCTCGGTC GAGAAAAGGGGTCAACGGTCTAGGGACTACGGCAAGCACAGCATGAGTAC TACCGTAGCATATATACAGTCAGTCGACCTAGTTAAAAACCCGTTTTCCC GATAAGAGGGGCACCTTCGCCGCCCGTTTTCGACAGTATGGCGCTGAGGA GATGGGATTGTCTTGCCCCCGCGCCCGGCTCATTCCACACGGATTTGCAG CGCGATCGGGGCAGTACTTCAGCCGTTGTCGATATCTGAAAATTCCGAAG TTTATTTTTTAACTAGTTTGCTTGACTGTAGAGCTCTACTACCTGCTCCG TCTCGATCGAGGCGCGTGGCCAATGGTGTCGGGACTACGGCAAGCACAAC GTGAGTACGAAGTACATATATCTACTGCCTATTGTACAATACTGTACTCG AGTACTTCGTACTTGGTTTGCTACTTGTACTACTACTGGATATAGCTGTA CTTTGCGGGTTATACAGTAGCAAGAATGGGGATGACGCACTGTAGCTCTA CAGTGAGCGCATGCATTCTTCGACATACACGGCAAGAATGTCCGTAACGC ATGCCGGCCATAAACCCCTGCCTGCCGCGCGCAGGGACTCAGAGGCCCGT CTGTGGCTGCAGCAGGCGTTCCCCCTGCTCTTCAAGTGGCACAAGTACCT GCACACACAGCGGGCCGACCCTAGAACCGGCCTGGTCTACGTGTACCACC CTTGGGAGACGACCCTTCCGCTCGACTCGCCACTGTGGGAGCCTTTGCTG CAGGAAGCCAGGTACGGCTACAGTCTTTTTGCCGAGTACTTCCAACATGC ACTTCCTGATAATGTACCTTCTGGAGTTGTGTGTCGGCCCGCTATTTTTC GGTCCGATATCGGTATGAGTGCACATACGAATGCCTCCAAGTACTTGGAA GGAAGTAATCCTCTGAAGAGCCTTGCCCACTCCAGGCCAAAAATTCGGGA GAGCGTTTCCTGCCGAATGCCGGCCGTATTTTTCCGGGGTGAAGGACAGC CTCGGAAGAGATCCACCTCTCCCTCTTGGGGAGGGCCTGGGGGACTTTTC CTGCCTTTTTGTTCTTTCTTTTTTTCTTTATTTTTATCTTTTTTGGGGGG TGGGGCAATTACCCCAACTGCAGTAAGTCGTTGGGGTATGTTCTACTCTC CGGCAAAAAGGGCGTGGGGGGATGGCATCTCTCGGGCAAACACCGCACTC TACGTGATGTACGTGATGTGATGTGGCTTGTGCTCTGAAATACCGTATTA ACAGGAACAACACAGGGCGAGGTGCAGGCCACGTCACTAGAGACCTCAAA AGTGGGGCTTCGCTCGCCAGGGGAGGTTTTTGTGGGGAAGGGGAGGAGGA GGGGCAGGAAGGGAGGAAGAGGAAGGAGAGGAAGGGAGGGGGGGGTGGGG GGGTGTAATGCAGTAGTTTGGCATCACATCGCATCGCCGCACATGAAGGG GGCCAAGATCGTTAAGTAGTCAACTCTCCGACAAACACCGGTACCGTACT TACTTCCGAAACCATGAATAGGCCTACTTGCAGCAGCACAGTATTTAGCA ATGCTACTCGTACTTCACCCTTTGACAGGTTCGCGCGCACTCAAGCAGAC AACAAAGAGGCACAGCACTCAGCACAACTTTTTACGGCATGTCGTCGCGC GCGCACATGCTTGTGTGCGCGCGTGTGTGCGTGCATGCTAAGTACTTCAC ATTTCGAAAGTTTCACGCGCACGCAACCAAACAACAACAAGCCGTCGCAG CACTCAGCACAGCCTTTTACAGCATGTCGTCGCGCGCGCACGTGTTCTTT ACCGGACATAAAAAATTCCAAAGACCAACGAAAACAAACCTAGAACATTC TACATCGCAGTACTTAGTATGCAATTGCTGGTTCACCATAGAGAACCTGA GAACACTCGCGTGCATGCTTGCGTGCGTGCGTGCAGGCAGCAGGCAGCGA ACCAATCCTGGCCTGAGCCAACCCTCCCCGAAGGCGTAACTTCTGTGCCG GGCTTCCCGGGCGCGGGGACGTATGGCGCTGCCCTGTACCTGGCCGAGTG CCTGGCTCGACAGACGCCAAGTGCAAGCAGCCATGACTTGGCAGCAGAGG CCCCTGTGGCAGAGGTGGAGGGGCGGGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig73:115293..118521-

>mRNA_S-ischiensis_contig73.18620.1 ID=mRNA_S-ischiensis_contig73.18620.1|Name=mRNA_S-ischiensis_contig73.18620.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1644bp|location=Sequence derived from alignment at S-ischiensis_contig73:115293..118521- (Schizocladia ischiensis KU_0333)
ATGCTGAGCGTGAGCGGTAGGTGGGATCTTGTTGTGACGTACATACTATG
GTTCTGCCCCGGCTCTGTGTGGGCGGGGGTGGCAGTGGATGCGGCTGTAG
CCCTACTTAGTGACAACTATCGCGCTGAGCTGGGTGCAACCTCTCCGTCC
AGTTTCGTTGACCCCTTCCAAGCCAGCACGGCCTCGTTGGTGGTGTCTTG
GGCGTGGGCCCACGTGGACCAGCTTCGCGCGCGGATGCTGAGCGTGAGCG
GTAGGTGGGATCTTGTTGTGACGTACATACTATGGTTCTGCCCCGGCTCT
GTGTGGGCGGGGGTGGCAGTGGATGCGGCTGTAGCCCTACTTAGTGACAA
CTATCGCGCTGAGCTGGGTGCAACCTCTCCGTCCAGTTTCGTTGACCCCT
TCCAAGCCAGCACGGCCTCGTTGGTGGTGTCTTGGGCGTGGGCCCACGTG
GACCAGCTTCGCGCGCGGGCGGAGTTCCTGTCCATCTTCGAGGGGCAACG
GGAGGATGGACTCGTCCCGACGGCTCGCTTCTCTCGAGGCTACGACGCCC
CCTACCTGGGCGGCACGCTGCTCCCGGGCCCGGGCGCCTGGGCCACGGGA
TCCTTGGAAGGCGCCAACACGACAGGCTTGGCGGCGCTGCCGCTGCACGC
AGAGGTTGCCCTGCAGGTCTTTGACCTCTCCCTCAGGCGGAGTTCCTGTC
CATCTTCGAGGGGCAACGGGAGGATGGACTCGTCCCGACGGCTCGCTTCT
CTCGAGGCTACGACGCCCCCTACCTGGGCGGCACGCTGCTCCCGGGCCCG
GGCGCCTGGGCCACGGGATCCTTGGAAGGCGCCAACACGACAGGCTTGGC
GGCGCTGCCGCTGCACGCAGAGGTTGCCCTGCAGGTCTTTGACCTCTCCC
TCAGGGACTCAGAGGCCCGTCTGTGGCTGCAGCAGGCGTTCCCCCTGCTC
TTCAAGTGGCACAAGTACCTGCACACACAGCGGGCCGACCCTAGAACCGG
CCTGGTCTACGTGTACCACCCTTGGGAGACGACCCTTCCGCTCGACTCGC
CACTGTGGGAGCCTTTGCTGCAGGAAGCCAGGGACTCAGAGGCCCGTCTG
TGGCTGCAGCAGGCGTTCCCCCTGCTCTTCAAGTGGCACAAGTACCTGCA
CACACAGCGGGCCGACCCTAGAACCGGCCTGGTCTACGTGTACCACCCTT
GGGAGACGACCCTTCCGCTCGACTCGCCACTGTGGGAGCCTTTGCTGCAG
GAAGCCAGGCAGCAGGCAGCGAACCAATCCTGGCCTGAGCCAACCCTCCC
CGAAGGCGTAACTTCTGTGCCGGGCTTCCCGGGCGCGGGGACGTATGGCG
CTGCCCTGTACCTGGCCGAGTGCCTGGCTCGACAGACGCCAAGTGCAAGC
AGCCATGACTTGGCAGCAGAGGCCCCTGTGGCAGAGGTGGAGGGGCGGGG
GGCAGCAGGCAGCGAACCAATCCTGGCCTGAGCCAACCCTCCCCGAAGGC
GTAACTTCTGTGCCGGGCTTCCCGGGCGCGGGGACGTATGGCGCTGCCCT
GTACCTGGCCGAGTGCCTGGCTCGACAGACGCCAAGTGCAAGCAGCCATG
ACTTGGCAGCAGAGGCCCCTGTGGCAGAGGTGGAGGGGCGGGGG
back to top