mRNA_S-ischiensis_contig111.2424.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig111.2424.1
Unique NamemRNA_S-ischiensis_contig111.2424.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A835YL82_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL82_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.270e-19
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   28 AAYPGSLLLRLGLGRPEDAASVPWPLPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRVLFN 222
            A +PGSLLLRLG+G  E A + PWP+P   KLQP  LF+Y+Y  RDL+P D+NGLLDPYL++ FN
Sbjct:  805 AGFPGSLLLRLGMGFEELAQAYPWPVPVHPKLQPYTLFMYIYQARDLNPEDANGLLDPYLKIRFN 869          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: K3X523_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X523_GLOUD)

HSP 1 Score: 67.0 bits (162), Expect = 3.010e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   10 VKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            + A+    +PG++L+RLG G  EDA   PW    + A  K  P +L +++Y GR L PADSNGLLDPYL V
Sbjct:  207 IDALADDEFPGNVLVRLGFGTEEDAHRTPWDRADMDAVNKRVPYQLRVHVYQGRRLPPADSNGLLDPYLVV 277          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A484EEQ4_BRELC (Uncharacterized protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEQ4_BRELC)

HSP 1 Score: 65.1 bits (157), Expect = 1.440e-10
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPW---PLPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+RLG G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L V
Sbjct:  493 QAIDALEDETFPGNVLIRLGFGTEEMAMKTTWNRSDLEAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLVV 565          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A3F2S008_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S008_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.700e-10
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+RLG G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L V
Sbjct:  838 QAIDALEDDTFPGNVLVRLGFGTEEMAMQTAWDRSDLDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLIV 910          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A0W8D719_PHYNI (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D719_PHYNI)

HSP 1 Score: 63.9 bits (154), Expect = 3.680e-10
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+R+G G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L V
Sbjct:  772 QAIDALEDETFPGNVLVRMGFGTEEMAMQTAWDRSDLDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLVV 844          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: H3GR54_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GR54_PHYRM)

HSP 1 Score: 63.9 bits (154), Expect = 3.690e-10
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+R+G G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L V
Sbjct:  839 QAIDALEDETFPGNVLVRMGFGTEEMAMQTAWDRSELDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLIV 911          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: G4ZFS2_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZFS2_PHYSP)

HSP 1 Score: 63.5 bits (153), Expect = 5.040e-10
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+R+G G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L +
Sbjct:  828 QAIDALEDETFPGNVLVRMGFGTEEMAMQTAWDRSDLDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLVI 900          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A662WHM1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHM1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.040e-10
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWPLP---APGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A+++  +PG+ L+R+G G  E A    W      A  K  P +L +++Y GR L PADSNGLLDPYL V
Sbjct:  845 QAIDALESETFPGNALVRMGFGTEEMATETAWDRSDRDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPYLVV 917          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: A0A0P1A6S5_PLAHL (Inositol polyphosphate 5-phosphatase and related proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6S5_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 5.060e-10
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+R+G G  E A    W    L A  K  P +L +++Y GR L PADSNGLLDP+L V
Sbjct:  852 QAINALEDETFPGNVLVRIGFGTEEMAMHTMWDRTDLDAVNKRIPYQLRVHIYQGRRLPPADSNGLLDPFLVV 924          
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Match: M4BQ73_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQ73_HYAAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.890e-10
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 QVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWP---LPAPGKLQPVRLFIYLYMGRDLSPADSNGLLDPYLRV 213
            Q + A++   +PG++L+R+G G  E A    W    L A  K  P +L  ++Y GR L PADSNGLLDPYL +
Sbjct:  842 QAIDALEDETFPGNVLVRMGFGTEEMAMHTSWDRTDLDAVNKRIPYQLRAHIYQGRRLPPADSNGLLDPYLVI 914          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig111.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835YL82_9STRA2.270e-1961.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3X523_GLOUD3.010e-1147.89Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A484EEQ4_BRELC1.440e-1045.21Uncharacterized protein n=2 Tax=Bremia lactucae Ta... [more]
A0A3F2S008_9STRA2.700e-1045.21Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A0W8D719_PHYNI3.680e-1043.84Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
H3GR54_PHYRM3.690e-1043.84Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
G4ZFS2_PHYSP5.040e-1042.47Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A662WHM1_9STRA5.040e-1043.84Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0P1A6S5_PLAHL5.060e-1043.84Inositol polyphosphate 5-phosphatase and related p... [more]
M4BQ73_HYAAE6.890e-1043.84Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig111contigS-ischiensis_contig111:40940..41626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog36331.EPrPI00000020399
KEGG koko:K19949,ko:K22125,ko:K22127
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.Myoferlin. Source PGD
EggNOG OGs1MCHA@121069,KOG1032@1,KOG1032@2759,KOG1326@1,KOG1326@2759
COG Functional cat.M
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.2054782-CDS-S-ischiensis_contig111:40939..411001622815622.2054782-CDS-S-ischiensis_contig111:40939..41100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 40940..41100 +
1695739810.0577788-CDS-S-ischiensis_contig111:40939..411001695739810.0577788-CDS-S-ischiensis_contig111:40939..41100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 40940..41100 +
1622815622.2187917-CDS-S-ischiensis_contig111:41565..416261622815622.2187917-CDS-S-ischiensis_contig111:41565..41626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 41566..41626 +
1695739810.0678391-CDS-S-ischiensis_contig111:41565..416261695739810.0678391-CDS-S-ischiensis_contig111:41565..41626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig111 41566..41626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig111.2424.1prot_S-ischiensis_contig111.2424.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig111 40940..41626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig111.2424.1

>prot_S-ischiensis_contig111.2424.1 ID=prot_S-ischiensis_contig111.2424.1|Name=mRNA_S-ischiensis_contig111.2424.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
MQVVKAMDTAAYPGSLLLRLGLGRPEDAASVPWPLPAPGKLQPVRLFIYL
YMGRDLSPADSNGLLDPYLRVLFN
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mRNA from alignment at S-ischiensis_contig111:40940..41626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig111.2424.1 ID=mRNA_S-ischiensis_contig111.2424.1|Name=mRNA_S-ischiensis_contig111.2424.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=687bp|location=Sequence derived from alignment at S-ischiensis_contig111:40940..41626+ (Schizocladia ischiensis KU_0333)
ATGCAGGTGGTCAAGGCCATGGACACCGCCGCATACCCCGGGTCGCTGCT GCTGCGCCTGGGGCTAGGGCGGCCGGAGGATGCCGCCTCTGTACCATGGC CCCTCCCAGCCCCCGGCAAGCTGCAGCCCGTGCGCCTCTTCATCTACCTT TACATGGGGCGGTGAGCACGAGCGATGCAGAAAATACTACATCGAAGTAA AAAACTATACAATATGCTTCGTAGCACTTTGGGGTCGCTTTGCTATTTTT ATTTTTTGATCGCTGTCACTGCCTGTGGTTGTACCTCTACCTGAGGCGGT GGGTACCAGCGACACAGTACTACTGTACTGTGCATATCGTGCGCTTGATA GTGGTGTGCAGATCTAGGTGCTGATGTTGTTGTCGCTACAATTGCTGATG TGGGGCGGTGAATGCCAGTAGTGGCGCCGCGCCATGTACTTCCAAGTATG TTTCATGCCGCACTACAGTACAGTACAGCAAGTTGGATTGTTGTAGAAGT ACTACAGTACTCTACTGCACATATATGCTCCTTCCTCTGCACCGACACAG GGCGATGAGTACCAGCTACTGCCACACCTGCCGCCGTCGCCGCCGCCACC GCCGCCGCCACCACCAAAACATGCAGGGACCTGTCACCCGCGGACTCCAA CGGTCTCCTGGACCCTTACCTCCGGGTGCTCTTTAAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig111:40940..41626+

>mRNA_S-ischiensis_contig111.2424.1 ID=mRNA_S-ischiensis_contig111.2424.1|Name=mRNA_S-ischiensis_contig111.2424.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig111:40940..41626+ (Schizocladia ischiensis KU_0333)
ATGCAGGTGGTCAAGGCCATGGACACCGCCGCATACCCCGGGTCGCTGCT
GCTGCGCCTGGGGCTAGGGCGGCCGGAGGATGCCGCCTCTGTACCATGGC
CCCTCCCAGCCCCCGGCAAGCTGCAGCCCGTGCGCCTCTTCATCTACCTT
TACATGGGGCGATGCAGGTGGTCAAGGCCATGGACACCGCCGCATACCCC
GGGTCGCTGCTGCTGCGCCTGGGGCTAGGGCGGCCGGAGGATGCCGCCTC
TGTACCATGGCCCCTCCCAGCCCCCGGCAAGCTGCAGCCCGTGCGCCTCT
TCATCTACCTTTACATGGGGCGGGACCTGTCACCCGCGGACTCCAACGGT
CTCCTGGACCCTTACCTCCGGGTGCTCTTTAATGGACCTGTCACCCGCGG
ACTCCAACGGTCTCCTGGACCCTTACCTCCGGGTGCTCTTTAAT
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