mRNA_S-ischiensis_contig110.2413.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2413.1
Unique NamemRNA_S-ischiensis_contig110.2413.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A7S6U9Z6_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z6_9STRA)

HSP 1 Score: 264 bits (675), Expect = 3.450e-89
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID
Sbjct:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: B7T1U6_VAULI (50S ribosomal protein L11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1U6_VAULI)

HSP 1 Score: 221 bits (562), Expect = 5.620e-72
Identity = 115/139 (82.73%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISI 417
            M KKIT IIKLALPAGKA+P+PPVGPALSQHGVNIA+FCKEYNAKTADK DLIIPVEISVY+DRS++ +LKTPPAS+LL+KA NIK+GSSEPNKQ VASIS+ +LEEIA+IKLPDLNT KL SAIKIIEGTA+NMGI I
Sbjct:    1 MAKKITAIIKLALPAGKAMPSPPVGPALSQHGVNIASFCKEYNAKTADKGDLIIPVEISVYQDRSYTFILKTPPASILLSKAANIKKGSSEPNKQIVASISRIKLEEIAQIKLPDLNTMKLTSAIKIIEGTAQNMGIGI 139          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HBU8_9STRA (50S ribosomal protein L11, chloroplastic n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A023HBU8_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.760e-70
Identity = 111/141 (78.72%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            MPKKI  +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T+DK  LIIPVEISVYEDRS++ VLKTPPASVLL  A  IK+GS+ PNK +V SI+K QLEEIA IKLPDLNTTK+ SAIKI+EGTA+NMGISI+D
Sbjct:    1 MPKKINALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTSDKMGLIIPVEISVYEDRSYTFVLKTPPASVLLANAAKIKKGSATPNKLTVGSITKAQLEEIANIKLPDLNTTKINSAIKIVEGTARNMGISIVD 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HBV4_9STRA (50S ribosomal protein L11, chloroplastic n=2 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A023HBV4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.920e-70
Identity = 113/141 (80.14%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKTA+K  LIIPVEISVYEDRS++ +LKTPPASVLLT A  IK+GSS P K  V S++K QLEEIA IKLPDLNTTKL SAIKI+EGTA+NMGISIID
Sbjct:    1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTAEKSGLIIPVEISVYEDRSYTFILKTPPASVLLTNAAKIKKGSSTPPKTMVGSVTKAQLEEIATIKLPDLNTTKLSSAIKIVEGTARNMGISIID 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A089VNN0_CERBC (50S ribosomal protein L11, chloroplastic n=18 Tax=Sar TaxID=2698737 RepID=A0A089VNN0_CERBC)

HSP 1 Score: 214 bits (546), Expect = 1.590e-69
Identity = 110/141 (78.01%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK  LIIPVEISVYEDRS++ +LKTPPASVLL KA  +++GSS PN+ +V SI+K QLEEIA IKLPDLNTTK+ SA+KI+EGTAKNMGISI D
Sbjct:    1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTGDKAGLIIPVEISVYEDRSYTFILKTPPASVLLAKAAKVQKGSSTPNRINVGSITKAQLEEIASIKLPDLNTTKISSAVKIVEGTAKNMGISITD 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: UPI001EDD1C44 (ribosomal protein L11 n=2 Tax=Thalassionema TaxID=33648 RepID=UPI001EDD1C44)

HSP 1 Score: 214 bits (546), Expect = 1.590e-69
Identity = 112/141 (79.43%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KK+T +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK  LIIPVEISVYEDRS++ +LKTPPASVLL  A  IK+GS  PNK SV SIS  QLEEIA+IKLPDLNTTK+ SAIKI+EGTA+NMGISIID
Sbjct:    1 MAKKVTGLIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTNDKTGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKIKKGSQTPNKLSVGSISSTQLEEIAQIKLPDLNTTKISSAIKIVEGTARNMGISIID 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HAL5_9STRA (50S ribosomal protein L11, chloroplastic n=4 Tax=Bacillariophycidae TaxID=33850 RepID=A0A023HAL5_9STRA)

HSP 1 Score: 213 bits (542), Expect = 6.480e-69
Identity = 111/141 (78.72%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T DK  LIIPVEISVYEDRS+  VLKTPPASVLL  A  IKRGS+ PNK  V SI++ QLEEIA IKLPDLNTTKL SA+KI+EGTA+NMGISI+D
Sbjct:    1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTGDKVGLIIPVEISVYEDRSYKFVLKTPPASVLLANAAKIKRGSATPNKTRVGSITQAQLEEIANIKLPDLNTTKLSSAMKIVEGTARNMGISIVD 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: H2EV41_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV41_9STRA)

HSP 1 Score: 213 bits (541), Expect = 9.210e-69
Identity = 111/141 (78.72%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T DK  LIIPVEISV+EDRS++ VLKTPPASVLL  A  IKRGS  PNKQ V S++K QLEEIA+ KLPDLNTTK+ SAIKI+EGTA+NMGISIID
Sbjct:    1 MAKKITGLIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTGDKVGLIIPVEISVFEDRSYTFVLKTPPASVLLANAAKIKRGSPTPNKQIVGSVTKAQLEEIAQTKLPDLNTTKISSAIKIVEGTARNMGISIID 141          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A2U9NTG9_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Acanthoceras zachariasii TaxID=451788 RepID=A0A2U9NTG9_9STRA)

HSP 1 Score: 213 bits (541), Expect = 9.210e-69
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISII 420
            M KK+T ++KLALPA KA PAPPVGPAL QHGVNIA FCKEYNA+T+DK  LIIPVEIS++EDRSF+ VLKTPPASVLL  A  IK+GS+ PNK +V SI+K QLEEIAKIKLPDLNTTK+ESAIKIIEGTA+NMGISII
Sbjct:    1 MAKKLTAVVKLALPAAKATPAPPVGPALGQHGVNIAGFCKEYNARTSDKAGLIIPVEISIFEDRSFTFVLKTPPASVLLVNAAKIKKGSATPNKTNVGSINKSQLEEIAKIKLPDLNTTKIESAIKIIEGTARNMGISII 140          
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A0K1DD27_PSEMU (50S ribosomal protein L11, chloroplastic n=18 Tax=Ochrophyta TaxID=2696291 RepID=A0A0K1DD27_PSEMU)

HSP 1 Score: 212 bits (540), Expect = 1.400e-68
Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = 1
Query:    1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIK--RGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
            M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK  LIIPVEISVYEDRS++ +LKTPPASVLL  A NIK  +GSS+PN   V SI+K QLEEIA +KLPDLNTTKLESA+KI+EGTA+NMGISI+D
Sbjct:    1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTGDKAGLIIPVEISVYEDRSYTFILKTPPASVLLVNAANIKDKKGSSKPNLIKVGSITKAQLEEIATVKLPDLNTTKLESAMKIVEGTARNMGISIVD 143          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9Z6_9STRA3.450e-89100.0050S ribosomal protein L11, chloroplastic n=1 Tax=S... [more]
B7T1U6_VAULI5.620e-7282.7350S ribosomal protein L11, chloroplastic n=1 Tax=V... [more]
A0A023HBU8_9STRA2.760e-7078.7250S ribosomal protein L11, chloroplastic n=5 Tax=B... [more]
A0A023HBV4_9STRA3.920e-7080.1450S ribosomal protein L11, chloroplastic n=2 Tax=C... [more]
A0A089VNN0_CERBC1.590e-6978.0150S ribosomal protein L11, chloroplastic n=18 Tax=... [more]
UPI001EDD1C441.590e-6979.43ribosomal protein L11 n=2 Tax=Thalassionema TaxID=... [more]
A0A023HAL5_9STRA6.480e-6978.7250S ribosomal protein L11, chloroplastic n=4 Tax=B... [more]
H2EV41_9STRA9.210e-6978.7250S ribosomal protein L11, chloroplastic n=1 Tax=U... [more]
A0A2U9NTG9_9STRA9.210e-6977.8650S ribosomal protein L11, chloroplastic n=1 Tax=A... [more]
A0A0K1DD27_PSEMU1.400e-6878.3250S ribosomal protein L11, chloroplastic n=18 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:104066..104491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog159749.E7BWC7
Preferred namePRPL11
KEGG koko:K02863,ko:K02867
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0080@1,KOG3257@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.612115-CDS-S-ischiensis_contig110:104065..1044911622815621.612115-CDS-S-ischiensis_contig110:104065..104491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 104066..104491 +
1695739809.7050185-CDS-S-ischiensis_contig110:104065..1044911695739809.7050185-CDS-S-ischiensis_contig110:104065..104491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 104066..104491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2413.1prot_S-ischiensis_contig110.2413.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 104066..104491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2413.1

>prot_S-ischiensis_contig110.2413.1 ID=prot_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp
MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKK
DLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASI
SKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID*
back to top

mRNA from alignment at S-ischiensis_contig110:104066..104491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2413.1 ID=mRNA_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig110:104066..104491+ (Schizocladia ischiensis KU_0333)
ATGCCAAAAAAAATTACAACAATAATCAAATTAGCTTTACCTGCAGGTAA AGCTGTACCTGCTCCACCAGTAGGTCCAGCACTTAGTCAACATGGAGTTA ATATTGCGGCCTTTTGTAAAGAGTATAATGCTAAAACCGCGGATAAGAAA GACTTAATTATACCTGTAGAAATTTCGGTATATGAAGATCGATCGTTTTC TATTGTGTTAAAAACTCCCCCTGCATCAGTCTTACTTACAAAGGCAACGA ATATAAAAAGGGGTTCGTCAGAACCTAATAAACAAAGTGTAGCCTCAATT AGTAAACCTCAATTAGAAGAAATTGCTAAAATTAAATTGCCAGATTTAAA TACAACTAAATTAGAAAGTGCTATAAAAATAATTGAAGGTACTGCAAAAA ATATGGGAATTTCAATAATTGATTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig110:104066..104491+

>mRNA_S-ischiensis_contig110.2413.1 ID=mRNA_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig110:104066..104491+ (Schizocladia ischiensis KU_0333)
ATGCCAAAAAAAATTACAACAATAATCAAATTAGCTTTACCTGCAGGTAA
AGCTGTACCTGCTCCACCAGTAGGTCCAGCACTTAGTCAACATGGAGTTA
ATATTGCGGCCTTTTGTAAAGAGTATAATGCTAAAACCGCGGATAAGAAA
GACTTAATTATACCTGTAGAAATTTCGGTATATGAAGATCGATCGTTTTC
TATTGTGTTAAAAACTCCCCCTGCATCAGTCTTACTTACAAAGGCAACGA
ATATAAAAAGGGGTTCGTCAGAACCTAATAAACAAAGTGTAGCCTCAATT
AGTAAACCTCAATTAGAAGAAATTGCTAAAATTAAATTGCCAGATTTAAA
TACAACTAAATTAGAAAGTGCTATAAAAATAATTGAAGGTACTGCAAAAA
ATATGGGAATTTCAATAATTGATTAAATGCCAAAAAAAATTACAACAATA
ATCAAATTAGCTTTACCTGCAGGTAAAGCTGTACCTGCTCCACCAGTAGG
TCCAGCACTTAGTCAACATGGAGTTAATATTGCGGCCTTTTGTAAAGAGT
ATAATGCTAAAACCGCGGATAAGAAAGACTTAATTATACCTGTAGAAATT
TCGGTATATGAAGATCGATCGTTTTCTATTGTGTTAAAAACTCCCCCTGC
ATCAGTCTTACTTACAAAGGCAACGAATATAAAAAGGGGTTCGTCAGAAC
CTAATAAACAAAGTGTAGCCTCAATTAGTAAACCTCAATTAGAAGAAATT
GCTAAAATTAAATTGCCAGATTTAAATACAACTAAATTAGAAAGTGCTAT
AAAAATAATTGAAGGTACTGCAAAAAATATGGGAATTTCAATAATTGATT
AA
back to top