mRNA_S-ischiensis_contig110.2413.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A7S6U9Z6_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z6_9STRA) HSP 1 Score: 264 bits (675), Expect = 3.450e-89 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID
Sbjct: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: B7T1U6_VAULI (50S ribosomal protein L11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1U6_VAULI) HSP 1 Score: 221 bits (562), Expect = 5.620e-72 Identity = 115/139 (82.73%), Postives = 129/139 (92.81%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISI 417
M KKIT IIKLALPAGKA+P+PPVGPALSQHGVNIA+FCKEYNAKTADK DLIIPVEISVY+DRS++ +LKTPPAS+LL+KA NIK+GSSEPNKQ VASIS+ +LEEIA+IKLPDLNT KL SAIKIIEGTA+NMGI I
Sbjct: 1 MAKKITAIIKLALPAGKAMPSPPVGPALSQHGVNIASFCKEYNAKTADKGDLIIPVEISVYQDRSYTFILKTPPASILLSKAANIKKGSSEPNKQIVASISRIKLEEIAQIKLPDLNTMKLTSAIKIIEGTAQNMGIGI 139
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HBU8_9STRA (50S ribosomal protein L11, chloroplastic n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A023HBU8_9STRA) HSP 1 Score: 216 bits (551), Expect = 2.760e-70 Identity = 111/141 (78.72%), Postives = 124/141 (87.94%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
MPKKI +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T+DK LIIPVEISVYEDRS++ VLKTPPASVLL A IK+GS+ PNK +V SI+K QLEEIA IKLPDLNTTK+ SAIKI+EGTA+NMGISI+D
Sbjct: 1 MPKKINALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTSDKMGLIIPVEISVYEDRSYTFVLKTPPASVLLANAAKIKKGSATPNKLTVGSITKAQLEEIANIKLPDLNTTKINSAIKIVEGTARNMGISIVD 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HBV4_9STRA (50S ribosomal protein L11, chloroplastic n=2 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A023HBV4_9STRA) HSP 1 Score: 216 bits (550), Expect = 3.920e-70 Identity = 113/141 (80.14%), Postives = 123/141 (87.23%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKTA+K LIIPVEISVYEDRS++ +LKTPPASVLLT A IK+GSS P K V S++K QLEEIA IKLPDLNTTKL SAIKI+EGTA+NMGISIID
Sbjct: 1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTAEKSGLIIPVEISVYEDRSYTFILKTPPASVLLTNAAKIKKGSSTPPKTMVGSVTKAQLEEIATIKLPDLNTTKLSSAIKIVEGTARNMGISIID 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A089VNN0_CERBC (50S ribosomal protein L11, chloroplastic n=18 Tax=Sar TaxID=2698737 RepID=A0A089VNN0_CERBC) HSP 1 Score: 214 bits (546), Expect = 1.590e-69 Identity = 110/141 (78.01%), Postives = 123/141 (87.23%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK LIIPVEISVYEDRS++ +LKTPPASVLL KA +++GSS PN+ +V SI+K QLEEIA IKLPDLNTTK+ SA+KI+EGTAKNMGISI D
Sbjct: 1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTGDKAGLIIPVEISVYEDRSYTFILKTPPASVLLAKAAKVQKGSSTPNRINVGSITKAQLEEIASIKLPDLNTTKISSAVKIVEGTAKNMGISITD 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: UPI001EDD1C44 (ribosomal protein L11 n=2 Tax=Thalassionema TaxID=33648 RepID=UPI001EDD1C44) HSP 1 Score: 214 bits (546), Expect = 1.590e-69 Identity = 112/141 (79.43%), Postives = 122/141 (86.52%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KK+T +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK LIIPVEISVYEDRS++ +LKTPPASVLL A IK+GS PNK SV SIS QLEEIA+IKLPDLNTTK+ SAIKI+EGTA+NMGISIID
Sbjct: 1 MAKKVTGLIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTNDKTGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKIKKGSQTPNKLSVGSISSTQLEEIAQIKLPDLNTTKISSAIKIVEGTARNMGISIID 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A023HAL5_9STRA (50S ribosomal protein L11, chloroplastic n=4 Tax=Bacillariophycidae TaxID=33850 RepID=A0A023HAL5_9STRA) HSP 1 Score: 213 bits (542), Expect = 6.480e-69 Identity = 111/141 (78.72%), Postives = 121/141 (85.82%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T DK LIIPVEISVYEDRS+ VLKTPPASVLL A IKRGS+ PNK V SI++ QLEEIA IKLPDLNTTKL SA+KI+EGTA+NMGISI+D
Sbjct: 1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTGDKVGLIIPVEISVYEDRSYKFVLKTPPASVLLANAAKIKRGSATPNKTRVGSITQAQLEEIANIKLPDLNTTKLSSAMKIVEGTARNMGISIVD 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: H2EV41_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV41_9STRA) HSP 1 Score: 213 bits (541), Expect = 9.210e-69 Identity = 111/141 (78.72%), Postives = 122/141 (86.52%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNA+T DK LIIPVEISV+EDRS++ VLKTPPASVLL A IKRGS PNKQ V S++K QLEEIA+ KLPDLNTTK+ SAIKI+EGTA+NMGISIID
Sbjct: 1 MAKKITGLIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTGDKVGLIIPVEISVFEDRSYTFVLKTPPASVLLANAAKIKRGSPTPNKQIVGSVTKAQLEEIAQTKLPDLNTTKISSAIKIVEGTARNMGISIID 141
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A2U9NTG9_9STRA (50S ribosomal protein L11, chloroplastic n=1 Tax=Acanthoceras zachariasii TaxID=451788 RepID=A0A2U9NTG9_9STRA) HSP 1 Score: 213 bits (541), Expect = 9.210e-69 Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIKRGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISII 420
M KK+T ++KLALPA KA PAPPVGPAL QHGVNIA FCKEYNA+T+DK LIIPVEIS++EDRSF+ VLKTPPASVLL A IK+GS+ PNK +V SI+K QLEEIAKIKLPDLNTTK+ESAIKIIEGTA+NMGISII
Sbjct: 1 MAKKLTAVVKLALPAAKATPAPPVGPALGQHGVNIAGFCKEYNARTSDKAGLIIPVEISIFEDRSFTFVLKTPPASVLLVNAAKIKKGSATPNKTNVGSINKSQLEEIAKIKLPDLNTTKIESAIKIIEGTARNMGISII 140
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Match: A0A0K1DD27_PSEMU (50S ribosomal protein L11, chloroplastic n=18 Tax=Ochrophyta TaxID=2696291 RepID=A0A0K1DD27_PSEMU) HSP 1 Score: 212 bits (540), Expect = 1.400e-68 Identity = 112/143 (78.32%), Postives = 124/143 (86.71%), Query Frame = 1
Query: 1 MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKDLIIPVEISVYEDRSFSIVLKTPPASVLLTKATNIK--RGSSEPNKQSVASISKPQLEEIAKIKLPDLNTTKLESAIKIIEGTAKNMGISIID 423
M KKIT +IKLALPAGKA PAPPVGPAL QHGVNIAAFCKEYNAKT DK LIIPVEISVYEDRS++ +LKTPPASVLL A NIK +GSS+PN V SI+K QLEEIA +KLPDLNTTKLESA+KI+EGTA+NMGISI+D
Sbjct: 1 MAKKITALIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTGDKAGLIIPVEISVYEDRSYTFILKTPPASVLLVNAANIKDKKGSSKPNLIKVGSITKAQLEEIATVKLPDLNTTKLESAMKIVEGTARNMGISIVD 143 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig110.2413.1 >prot_S-ischiensis_contig110.2413.1 ID=prot_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp MPKKITTIIKLALPAGKAVPAPPVGPALSQHGVNIAAFCKEYNAKTADKKback to top mRNA from alignment at S-ischiensis_contig110:104066..104491+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig110.2413.1 ID=mRNA_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig110:104066..104491+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig110:104066..104491+ >mRNA_S-ischiensis_contig110.2413.1 ID=mRNA_S-ischiensis_contig110.2413.1|Name=mRNA_S-ischiensis_contig110.2413.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig110:104066..104491+ (Schizocladia ischiensis KU_0333)back to top |