mRNA_S-ischiensis_contig11.2196.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2196.1
Unique NamemRNA_S-ischiensis_contig11.2196.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2196.1 vs. uniprot
Match: A0A836CN62_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN62_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.310e-38
Identity = 101/288 (35.07%), Postives = 142/288 (49.31%), Query Frame = 2 
Query:  122 IEWWLPLAYI-----LGGLVALLLRWRGKGKATHKPPVDDL--------DSINAPLLEAHDASEPLLSGNGE---------KMYSITATSMLWATLAFSYTECVYELVKACLEAADNGFGTVNFRASLALCVAWLLAALARSHDHWFQASLGPPAVDAAGKPRRQRMWWALWPFFNLSFITAATDYFPGMEGGR-GFMEVVQDDELWSVIVRGLALLTVTHAGLLGAPVRLVRTPPNEEYRAGFFSAAFFNWFSPTIERGYTKQLDTADLPVLMDDDRSADVWDRLTR 916
            + W LP  YI     + G  AL+ + R +   +   PV D         D+   PLL   D      + + E         + +++T T  LWAT+  +    VY   KA +EA D G  + +      LC + ++AA  R  DHW  +         A  PRR+R W  L+P+FNL+F+TA   Y  G  GG   F++ +  DELW+++ +G  L+ VTH+ L+GA V  +   PN EY+AG FS   F+WF+P I RG  KQL   DLP  M  DRS  VW R  R
Sbjct:    8 VSWLLPSVYIALIGVIYGFYALVKK-RSQNDHSKYTPVGDAPLDLADIRDNGTVPLLSHADGGSGAGNSSNEDDVEPEEGMETWTVTETGALWATVGLTLLLAVYHGAKAVIEAVDGGDRS-DVTMHAVLCASSVIAAACRDADHWQHSPEYVGPAPHAPSPRRRRAWLWLFPYFNLTFVTALLRYVRGDSGGATSFVDYMSQDELWALVAQGACLVLVTHSVLVGARVTRLYHAPNAEYKAGIFSWLMFSWFTPIIARGQRKQLGLPDLPPQMTWDRSRYVWWRFVR 293
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CN62_9STRA1.310e-3835.07ABC transporter type 1, transmembrane domain-conta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1931438..1935866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue1.7e-53
Seed eggNOG ortholog2880.D7G1Q3
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Exons5
Model size988
Cds size891
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2196.1prot_S-ischiensis_contig11.2196.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1931535..1935866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.590054-UTR-S-ischiensis_contig11:1931437..19315341622815605.590054-UTR-S-ischiensis_contig11:1931437..1931534Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1931438..1931534 +
1695739798.9638207-UTR-S-ischiensis_contig11:1931437..19315341695739798.9638207-UTR-S-ischiensis_contig11:1931437..1931534Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1931438..1931534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.6022615-CDS-S-ischiensis_contig11:1931534..19316971622815605.6022615-CDS-S-ischiensis_contig11:1931534..1931697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1931535..1931697 +
1695739798.9739418-CDS-S-ischiensis_contig11:1931534..19316971695739798.9739418-CDS-S-ischiensis_contig11:1931534..1931697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1931535..1931697 +
1622815605.6136036-CDS-S-ischiensis_contig11:1931979..19320921622815605.6136036-CDS-S-ischiensis_contig11:1931979..1932092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1931980..1932092 +
1695739798.9820545-CDS-S-ischiensis_contig11:1931979..19320921695739798.9820545-CDS-S-ischiensis_contig11:1931979..1932092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1931980..1932092 +
1622815605.6230276-CDS-S-ischiensis_contig11:1934532..19346581622815605.6230276-CDS-S-ischiensis_contig11:1934532..1934658Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1934533..1934658 +
1695739798.9901378-CDS-S-ischiensis_contig11:1934532..19346581695739798.9901378-CDS-S-ischiensis_contig11:1934532..1934658Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1934533..1934658 +
1622815605.6324675-CDS-S-ischiensis_contig11:1934799..19349721622815605.6324675-CDS-S-ischiensis_contig11:1934799..1934972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1934800..1934972 +
1695739798.9982545-CDS-S-ischiensis_contig11:1934799..19349721695739798.9982545-CDS-S-ischiensis_contig11:1934799..1934972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1934800..1934972 +
1622815605.6425114-CDS-S-ischiensis_contig11:1935550..19358661622815605.6425114-CDS-S-ischiensis_contig11:1935550..1935866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1935551..1935866 +
1695739799.006357-CDS-S-ischiensis_contig11:1935550..19358661695739799.006357-CDS-S-ischiensis_contig11:1935550..1935866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1935551..1935866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2196.1

>prot_S-ischiensis_contig11.2196.1 ID=prot_S-ischiensis_contig11.2196.1|Name=mRNA_S-ischiensis_contig11.2196.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=297bp
MGFFSTDEIEWWLPLAYILGGLVALLLRWRGKGKATHKPPVDDLDSINAP
LLEAHDASEPLLSGNGEKMYSITATSMLWATLAFSYTECVYELVKACLEA
ADNGFGTVNFRASLALCVAWLLAALARSHDHWFQASLGPPAVDAAGKPRR
QRMWWALWPFFNLSFITAATDYFPGMEGGRGFMEVVQDDELWSVIVRGLA
LLTVTHAGLLGAPVRLVRTPPNEEYRAGFFSAAFFNWFSPTIERGYTKQL
DTADLPVLMDDDRSADVWDRLTRCPARSPLDSCFGRGGRRRGSRGAA
back to top

mRNA from alignment at S-ischiensis_contig11:1931438..1935866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2196.1 ID=mRNA_S-ischiensis_contig11.2196.1|Name=mRNA_S-ischiensis_contig11.2196.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4429bp|location=Sequence derived from alignment at S-ischiensis_contig11:1931438..1935866+ (Schizocladia ischiensis KU_0333)
GTGACGGTGGAAAGCCGCCTTACCCCCGCAGGGGTCTCGCTGGGCTCTGC
TTGCTCCCCGCCCCCCACGTTGACAAGGGGGCGCACAGGAGCCCAACATG
GGATTCTTCTCCACAGACGAGATTGAGTGGTGGCTCCCGCTTGCCTACAT
CTTAGGAGGGTTGGTCGCACTGCTTCTGAGGTGGCGGGGGAAGGGCAAAG
CCACGCATAAGCCCCCGGTCGACGACTTGGACTCCATCAATGCCCCGCTG
TTGGAAGCACGTGCGTTCCGGATCATTATCCTCTCTCCGTTCTATTGCGT
ATTTAGCCCTGTGGCCGCTGGCCCATGTGGTCGTCCCGACAACAGGTTTT
CAGGCATATCTGCGCCGGCCTTGCTTTTCTTGCGTCTCCAGAGAAGCCGA
TTTCTGTCCTGGTCGCGGCTGTCGTCGAAGTATGGTGCACTGATTCAGTG
GTTCTCTTCAACTTTGGGGGATCTCGTGCTTGTATGGCGTTCTGAATCAT
CCCACTGCTGTTCCCCCCCCCCCGGTTGTTGCCCCCTCGCAGACGATGCA
TCCGAGCCGTTGCTCTCAGGCAACGGGGAGAAAATGTACAGCATCACGGC
CACGTCCATGCTCTGGGCAACGCTTGCCTTTTCATACACTGAGTGTGTCT
ATGAGGTGAGCAAGGGACCCTAGCCTTTTGCCTTGCCAGGGCTCCCCAAA
CAGAGCGTAGCAGGGTTTGGGATATGTCTTCACCCTTCGTTACGTTTGAG
TGTTATCCCATGTGTGTGAGGCGCGGTCAATCATGCCCAGCAATTCCGTG
GGGGGCGGAGTAGGTCAGTGCTGACCACAAGCCCGCCTCTGGGCCAGCGC
TGCATCGCAGATTCGTTTCCAGCAACAGCACCCAAAACGCTGAGAGCGCT
GGTGCTGGGACTGCGGCGCTGCCGGTACGCGTGATCTGCAGGGCTGCGAA
CTAGCATGGTGTTTGATCACAAGCTGTTCGGCTCTCGCCGTTTTTTAGTT
GTTCGGCTCTGGCCGTTGTCAGTTACGTGACCTGCCGGGGCTGCAATCTA
ACAGGGCGTTGGGTAGGAGCTCTTCGGATGTCGTTGTGTTATTGCTTCGT
ATTTAGTGAAATTGAGCCGGACGGTTACTTCGCGGCTTTTGGAGGCTGAA
AAAGTGTGGAAAACGGCAGTAAAGGCGCTGCCGTGGCGTATCATCCACAT
GACAACCGCTAAACACGCGCAAACGCAGCACCTTTAATGGGGGGGGACAC
GGCGGCCCTCGTCAAACTCTCTTCTCCATGTGCGCGCCGTGCCACCGACC
AGCGGCAAGCGCTCACCGTGATTCGAAATATGTGTCTACCACGTACTTCA
AAGTACTTACGAGTAAGAGTGTAGGTGACCGGCCCTCCCTCCAAAGTTCA
GAGCCTCGGCCAAAAGGGGGCCAAGGGCTCGATATATATGCTCGTATATA
TATATATATATATATATATACTTCCGGAACTATATACTTGGGAGTATGTA
TGTACTCATGTGGTGCTTGCCGTAGTCCAGAGACCATATATATATATACT
ACATAGTGTATATGTGCATAGTACTCGTATGTTACAGTGCGTAGCATATA
TGTGTGTATATATATATATATATATATATATCGGGACTACAGCACGCACC
ACGAGAGTACGCATATATATATATATATGTACGATGAGAGTCAAACTCAT
ATCCCTGCTTTGCGGTGAGTGGGCTCGGGAGGTTACTGTGACCTTGCATG
AGTTCCACCTCTGTAGGCATACGGTACTACTTCCAAGTATATGCCTCCCC
TCGGGGGTTGTGATTCTGCACAGTGGGCCTCTCGTGAACTCATGCACTAG
CAAAGAATTGATAGAGGTCGCACTGCTTCTCAGCTCATGCCAGCCAATCC
TCCGGCTCGCCGGCTCCACGCGGAGGGACTTGTTGCCGTTGAGTGCCCCC
CCCGGGGGGGCCAAGGTCAAGCCAGAACCAGTGTGCAACGCACGCTTGGC
CGGTGAATATAACGGCGGGCGCTCCCCGTCCGGGCATGGTAAGAAGCGGC
GTGAGGGAGGGCAGTGGCCTCTGATGATGTGATGTGATATCTCGATCGAG
GCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACCTA
TATATATCTGATGTGTAGTCTAGTTTACCATGGTTTGACAGCGCATCATA
TGGTATCACGTCACATCACATCGAGACCAATGGCCCGAAGGCTACCCGGC
GGGAGCTGGCCGGCGATCGCGCAAGTACTGTGCATGCTTCCAAGTAGTGG
GTCATCGCCGACCGGTGGCATGCGCAGGGACGGGGTACACTGTACATACA
ATAGTCGTACAAGTAGGTCCCTGTCGTAACACGAGTGCACTGCCACTATG
GTATGGTGGGAGGTAGAGTGGTACGTCACCTTCCGTAGCATTTCACTTGA
GTAGGACACAACAAGCGAGTGCTTTGGGTGGGCGCAGGACGGTTTTCAGC
ATGTACTCTATGCACAGGCCAATGGTCTCTGGACTACTTACGGCAAGCAC
AACGTAAGTGCAAGACGGCACTCTACCTTGTAGAGTAGTGGCCAGTGCAG
TGGTCTTGGGACTGTTTGGGGAAAGCCTGTAACAACGTGAGTACTTCACA
CGCACTGCTCCACTGTGTACCTTCAGGTACTGTACTGGTGTGAGCTTTTC
ACAGTACTGCGCTCATATCTAATACTCGTGCATGCTTCCCACGCACATGA
AGTAGTAGCTGCGCTTGCCAGGCCCGGAGACTATTACCCGCCGCAACCTC
TCCCGAGATCGGAGCATTGGCCACCGCCCGTATTCGGGCAACACATATTC
ACTATAACGAGAACACTCAATTCTTACAAGGGACAAGTACTACAGTAGTA
CTAATACGAGAATACTCAATCTCACACACGCGCAATTGCACCTCGTTACA
ATGTACTTCAAAGCATGAATCAACACCACAACACCAACCACCCCATCAAC
CGTCCCCTCCCTCCCCGCCCGCCCACCCGCCCGCCCCCTTGTACCCTCCC
TGTACCGTTCTGCATCAACACAAAAAACACTTGTGCGCACTCCAGCTGGT
GAAAGCGTGCCTGGAGGCCGCCGACAACGGCTTCGGCACGGTGAATTTCC
GGGCGTCCCTGGCCCTTTGCGTGGCCTGGCTCCTAGCCGCCCTGGCCCGG
AGCCACGACCACTGGTTCCAGGTGTGTGTGATGTGATGTGATGTGATGTG
CACACAGAAACACTGTAGTTTGACAACACATCACATCGAAACGCTGTAGT
TTTGACATCACATCGAGGAGGTGGCCAAGCTCAAGCAGCACTACAACCGC
TTCATGTACCAGGCATCGCTGGGGCCACCGGCCGTGGACGCAGCGGGGAA
GCCACGGAGGCAGCGCATGTGGTGGGCGCTGTGGCCCTTCTTCAACCTCT
CCTTCATCACCGCCGCCACCGACTACTTCCCGGGCATGGAGGGAGGGAGG
GGCTTCATGGAGGTTGTGCAGGATGACGAGCTCTGGTGGGTGTGTGGGTG
TGGGTGTGTGATTCATATAAATTGCAGCGAGGTATAATCGCACGTGTGTG
AGATTGACTGTTCTCGCAGTAGTAGTTGTCCCATTTTAGAATTGAGTGTT
CTCATATTGGAGGTTATTGCATCAAAGAACTAAAAACAAAGAGTGGGTGA
ATGGGTGTGCGGGTTGTTGTTCCATGCCGGAAGCGGACCGGCGGGTCAAG
ACGTGAACATTCACGAGGGCAGCTGTCTCTCCACTTGAAGTGAATGGGGT
TCACCCTCACCCCAAAACCCTTGGGAAGAATTCAGCCTTTTGACCGAGGG
GGATCGGGGTGTGGATCCGAGCCGTACCCTGCGAGGAGCGTTACCCCAAG
AAACTGGTTGGGGGGACCAGTTGTCACTGGCTTCCGCTCTACTCCTCACA
TGGCATGGTCTGTCTTTGGGCCCGTTGGCAATGCCGTGCACTATATGGTT
TATCACCGAAAAAGCAGCTCTCATTCCTCCCCATCTCGGTCACCCCCTCC
CTCCCTCCCTCCCTCAACCCCTCCCTCCCTCCCCCCCCCCTCCCTGCCCC
CCCCCCCCACCAGGAGCGTTATCGTGCGCGGCCTGGCGCTCCTGACCGTC
ACGCACGCGGGGCTCCTCGGGGCGCCGGTACGCCTGGTGCGGACGCCTCC
CAACGAGGAGTACCGGGCGGGCTTCTTCTCCGCCGCCTTCTTCAACTGGT
TCTCCCCAACCATCGAGCGCGGCTACACCAAGCAGCTGGATACCGCGGAC
CTCCCCGTCCTCATGGACGACGACCGCTCCGCCGACGTCTGGGACCGCCT
GACCCGCTGCCCCGCCCGCAGCCCCCTGGACTCGTGCTTCGGCCGCGGGG
GCCGCCGCCGCGGGAGCCGGGGGGCGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:1931438..1935866+

>mRNA_S-ischiensis_contig11.2196.1 ID=mRNA_S-ischiensis_contig11.2196.1|Name=mRNA_S-ischiensis_contig11.2196.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1782bp|location=Sequence derived from alignment at S-ischiensis_contig11:1931438..1935866+ (Schizocladia ischiensis KU_0333)
ATGGGATTCTTCTCCACAGACGAGATTGAGTGGTGGCTCCCGCTTGCCTA
CATCTTAGGAGGGTTGGTCGCACTGCTTCTGAGGTGGCGGGGGAAGGGCA
AAGCCACGCATAAGCCCCCGGTCGACGACTTGGACTCCATCAATGCCCCG
CTGTTGGAAGCACATGGGATTCTTCTCCACAGACGAGATTGAGTGGTGGC
TCCCGCTTGCCTACATCTTAGGAGGGTTGGTCGCACTGCTTCTGAGGTGG
CGGGGGAAGGGCAAAGCCACGCATAAGCCCCCGGTCGACGACTTGGACTC
CATCAATGCCCCGCTGTTGGAAGCACACGATGCATCCGAGCCGTTGCTCT
CAGGCAACGGGGAGAAAATGTACAGCATCACGGCCACGTCCATGCTCTGG
GCAACGCTTGCCTTTTCATACACTGAGTGTGTCTATGAGACGATGCATCC
GAGCCGTTGCTCTCAGGCAACGGGGAGAAAATGTACAGCATCACGGCCAC
GTCCATGCTCTGGGCAACGCTTGCCTTTTCATACACTGAGTGTGTCTATG
AGCTGGTGAAAGCGTGCCTGGAGGCCGCCGACAACGGCTTCGGCACGGTG
AATTTCCGGGCGTCCCTGGCCCTTTGCGTGGCCTGGCTCCTAGCCGCCCT
GGCCCGGAGCCACGACCACTGGTTCCAGCTGGTGAAAGCGTGCCTGGAGG
CCGCCGACAACGGCTTCGGCACGGTGAATTTCCGGGCGTCCCTGGCCCTT
TGCGTGGCCTGGCTCCTAGCCGCCCTGGCCCGGAGCCACGACCACTGGTT
CCAGGCATCGCTGGGGCCACCGGCCGTGGACGCAGCGGGGAAGCCACGGA
GGCAGCGCATGTGGTGGGCGCTGTGGCCCTTCTTCAACCTCTCCTTCATC
ACCGCCGCCACCGACTACTTCCCGGGCATGGAGGGAGGGAGGGGCTTCAT
GGAGGTTGTGCAGGATGACGAGCTCTGGCATCGCTGGGGCCACCGGCCGT
GGACGCAGCGGGGAAGCCACGGAGGCAGCGCATGTGGTGGGCGCTGTGGC
CCTTCTTCAACCTCTCCTTCATCACCGCCGCCACCGACTACTTCCCGGGC
ATGGAGGGAGGGAGGGGCTTCATGGAGGTTGTGCAGGATGACGAGCTCTG
GAGCGTTATCGTGCGCGGCCTGGCGCTCCTGACCGTCACGCACGCGGGGC
TCCTCGGGGCGCCGGTACGCCTGGTGCGGACGCCTCCCAACGAGGAGTAC
CGGGCGGGCTTCTTCTCCGCCGCCTTCTTCAACTGGTTCTCCCCAACCAT
CGAGCGCGGCTACACCAAGCAGCTGGATACCGCGGACCTCCCCGTCCTCA
TGGACGACGACCGCTCCGCCGACGTCTGGGACCGCCTGACCCGCTGCCCC
GCCCGCAGCCCCCTGGACTCGTGCTTCGGCCGCGGGGGCCGCCGCCGCGG
GAGCCGGGGGGCGGCGGAGCGTTATCGTGCGCGGCCTGGCGCTCCTGACC
GTCACGCACGCGGGGCTCCTCGGGGCGCCGGTACGCCTGGTGCGGACGCC
TCCCAACGAGGAGTACCGGGCGGGCTTCTTCTCCGCCGCCTTCTTCAACT
GGTTCTCCCCAACCATCGAGCGCGGCTACACCAAGCAGCTGGATACCGCG
GACCTCCCCGTCCTCATGGACGACGACCGCTCCGCCGACGTCTGGGACCG
CCTGACCCGCTGCCCCGCCCGCAGCCCCCTGGACTCGTGCTTCGGCCGCG
GGGGCCGCCGCCGCGGGAGCCGGGGGGCGGCG
back to top