prot_S-ischiensis_contig11.2196.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig11.2196.1
Unique Nameprot_S-ischiensis_contig11.2196.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length297
Homology
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BLAST of mRNA_S-ischiensis_contig11.2196.1 vs. uniprot
Match: A0A836CN62_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN62_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.090e-39
Identity = 101/290 (34.83%), Postives = 143/290 (49.31%), Query Frame = 0 
Query:    7 DEIEWWLPLAYI-----LGGLVALLLRWRGKGKATHKPPVDDL--------DSINAPLLEAHDASEPLLSGNGE---------KMYSITATSMLWATLAFSYTECVYELVKACLEAADNGFGTVNFRASLALCVAWLLAALARSHDHWFQASLGPPAVDAAGKPRRQRMWWALWPFFNLSFITAATDYFPGMEGGR-GFMEVVQDDELWSVIVRGLALLTVTHAGLLGAPVRLVRTPPNEEYRAGFFSAAFFNWFSPTIERGYTKQLDTADLPVLMDDDRSADVWDRLTR 273
            + + W LP  YI     + G  AL+ + R +   +   PV D         D+   PLL   D      + + E         + +++T T  LWAT+  +    VY   KA +EA D G  + +      LC + ++AA  R  DHW  +         A  PRR+R W  L+P+FNL+F+TA   Y  G  GG   F++ +  DELW+++ +G  L+ VTH+ L+GA V  +   PN EY+AG FS   F+WF+P I RG  KQL   DLP  M  DRS  VW R  R
Sbjct:    6 ELVSWLLPSVYIALIGVIYGFYALVKK-RSQNDHSKYTPVGDAPLDLADIRDNGTVPLLSHADGGSGAGNSSNEDDVEPEEGMETWTVTETGALWATVGLTLLLAVYHGAKAVIEAVDGGDRS-DVTMHAVLCASSVIAAACRDADHWQHSPEYVGPAPHAPSPRRRRAWLWLFPYFNLTFVTALLRYVRGDSGGATSFVDYMSQDELWALVAQGACLVLVTHSVLVGARVTRLYHAPNAEYKAGIFSWLMFSWFTPIIARGQRKQLGLPDLPPQMTWDRSRYVWWRFVR 293
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2196.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CN62_9STRA2.090e-3934.83ABC transporter type 1, transmembrane domain-conta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..174
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 218..297
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..154
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 175..193
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 10..29
NoneNo IPR availableTMHMMTMhelixcoord: 191..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1931535..1935866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2196.1mRNA_S-ischiensis_contig11.2196.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig11 1931438..1935866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig11.2196.1 ID=prot_S-ischiensis_contig11.2196.1|Name=mRNA_S-ischiensis_contig11.2196.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=297bp
MGFFSTDEIEWWLPLAYILGGLVALLLRWRGKGKATHKPPVDDLDSINAP
LLEAHDASEPLLSGNGEKMYSITATSMLWATLAFSYTECVYELVKACLEA
ADNGFGTVNFRASLALCVAWLLAALARSHDHWFQASLGPPAVDAAGKPRR
QRMWWALWPFFNLSFITAATDYFPGMEGGRGFMEVVQDDELWSVIVRGLA
LLTVTHAGLLGAPVRLVRTPPNEEYRAGFFSAAFFNWFSPTIERGYTKQL
DTADLPVLMDDDRSADVWDRLTRCPARSPLDSCFGRGGRRRGSRGAA
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