mRNA_S-ischiensis_contig11.2034.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2034.1
Unique NamemRNA_S-ischiensis_contig11.2034.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2034.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-11
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:  109 SCRVLGRLCWSLASTAPRARRILRDAVGPALPHSVSILTPLV--AGAGSSSEVSAAAQALLALVRAVIASIGQEVGPAFSSRSVEALVAA 372
            SCRVL RLC +  ST  +ARR+L  AV PAL   V+++ PL+  A AG S E  +AAQ LL L  +V+  +G+E GP F+S +V +L AA
Sbjct:  230 SCRVLSRLCRTFVSTPAKARRVLFQAVSPALSPIVTLVPPLLEQALAGGSKEAGSAAQGLLRLQVSVVECLGKEAGPTFASSAVGSLSAA 319
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJI2_9PHAE1.190e-1148.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:576880..579384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size375
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2034.1prot_S-ischiensis_contig11.2034.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 576880..579384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.5654132-CDS-S-ischiensis_contig11:576879..5769301622815576.5654132-CDS-S-ischiensis_contig11:576879..576930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 576880..576930 -
1695739780.9341478-CDS-S-ischiensis_contig11:576879..5769301695739780.9341478-CDS-S-ischiensis_contig11:576879..576930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 576880..576930 -
1622815576.5762396-CDS-S-ischiensis_contig11:577815..5779691622815576.5762396-CDS-S-ischiensis_contig11:577815..577969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 577816..577969 -
1695739780.9423661-CDS-S-ischiensis_contig11:577815..5779691695739780.9423661-CDS-S-ischiensis_contig11:577815..577969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 577816..577969 -
1622815576.586071-CDS-S-ischiensis_contig11:578831..5789371622815576.586071-CDS-S-ischiensis_contig11:578831..578937Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 578832..578937 -
1695739780.9502892-CDS-S-ischiensis_contig11:578831..5789371695739780.9502892-CDS-S-ischiensis_contig11:578831..578937Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 578832..578937 -
1622815576.59565-CDS-S-ischiensis_contig11:579320..5793841622815576.59565-CDS-S-ischiensis_contig11:579320..579384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 579321..579384 -
1695739780.9586399-CDS-S-ischiensis_contig11:579320..5793841695739780.9586399-CDS-S-ischiensis_contig11:579320..579384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 579321..579384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2034.1

>prot_S-ischiensis_contig11.2034.1 ID=prot_S-ischiensis_contig11.2034.1|Name=mRNA_S-ischiensis_contig11.2034.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MYTALLQPLLQDLWRVAAALEAGQQVSAEDLEGVRSSCRVLGRLCWSLAS
TAPRARRILRDAVGPALPHSVSILTPLVAGAGSSSEVSAAAQALLALVRA
VIASIGQEVGPAFSSRSVEALVAAW
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mRNA from alignment at S-ischiensis_contig11:576880..579384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2034.1 ID=mRNA_S-ischiensis_contig11.2034.1|Name=mRNA_S-ischiensis_contig11.2034.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2505bp|location=Sequence derived from alignment at S-ischiensis_contig11:576880..579384- (Schizocladia ischiensis KU_0333)
ATGTATACGGCCCTGCTGCAGCCGCTGCTTCAGGACCTCTGGCGCGTTGC
CGCCGCCTTGGAAGGTGAGTGAAACTCCCCCCGCCCCGAGCACATCTGTC
CAAATCGATCCGTGCCGAACATGAGAGCCAAAGTCGGTCGAGGAGTCGTG
GGTCGTTAGCCTTGGGGTGCAGAGCAGTACTTCAAAGTACGTACTACTGT
GCAAGTACGAGTGGCATTTCTCATCTGTACCGCCTGTGGTACCGCGTACT
CTGATACTTGAACCCTGCTTGATACTGGAACCCTGCTTGGCTCATTCTAT
CAGTAGGTACATACTCTATCAGTAGTAGCGTCGTGCTCACAAGCGTAGTA
ATCTGGGGGTAAGCTCGAAAACGATTTTGTGCGTCTTCCCTCCTTCCCTT
CCCTCCCCCCCTCCCTTCATCCGTCGGTTCGTCCACGGGAGGTGCAGCGG
GGCAACAGGTCTCTGCCGAGGATTTAGAAGGCGTGCGCAGCAGCTGCCGC
GTCCTGGGCCGTCTCTGCTGGAGCCTGGCCTCCACTGCCCCGAGGGCACG
CAGGTGAGTCGGTTTTTGTTCGGTCGGCGGAAGCGACGAGAGGCGCTGGT
GCATGCCTTGTGCCTTTTCGTGCTGTGAGCAAAGTGCTACGGTACGGTGC
TTGCCCATGGCACTCACGGTTTCGTTTTACTACTACAGTGAAGTACTTTG
GTGGAACAATGCGTACTTAGGGGGCATTCATTGGCACGGCGCTCTTCGTT
CTGCATGCGGCAGACGTTTTGCCTCTTTTTCCTCGGGCTCTCGAGGACTG
TCTCCGCTGCATAGTGGGTGGCGGATGGTCGTGCCAAGCGAGCCTTCCCC
GTGCGTGTTGTTGTCACATAAGTTCCATTGTTTGTTGCCACGGCGACTTT
CAGGCCGTGCTTGCTGCCCGCCTATCGGCCCACACCCGAGGATTCAGCCG
CGTCACAGGTCGTCGGGAGTTTTTCCTACTGCTTGGAAAGTGCGTACACA
ACTACTGTAGTAGTACTACTGTATGGTAGCACAAGCATATATATGTACTC
ACGTTGTGCTTGCCGTAGTCCTGAGACCATTGACCACGCGCCGTTGACGG
CGGAGCATTCTCCCTCCCCCCCCTGCCAAGCCAGGGAACACATGCAAGGC
AGTACAGTACCGTAGAGTACATACACTAGTGCAGTACTTGGAGGCTATGT
GCCTAAAGTGCTGCTCTACGTGCACAGCAGTATACTGTACTTGGGAGCTA
TTCCCGCAAGTTCTCGCTGCTGTTGGACCACAATTACAATGCAGGAGTAC
TGTACGTACTACGGTAGAACCAGTAGAGACGCACAGTAGTGTACGTACTG
TAGTACGACTTGTATGCTCCGTCCGGCGGTGTAGAAACCGCACGTGCCCC
CCCCCCGCTCTTCAGGATACTGCGTGATGCCGTGGGGCCTGCACTGCCCC
ACTCCGTCTCCATCCTCACGCCGCTCGTGGCGGGGGCGGGCTCCAGCTCG
GAGGTGTCGGCGGCAGCGCAGGCCTTGTTGGCCCTGGTGCGGGCGGTGAT
TGCAAGCATTGGCCAGGAGGTGCGTGCGGCTTGCTAGTGGTAGCAGCGCT
GACAGTTGAACGCGTACGCACGTATTTTGTTTTGTTTGCAAGAAGATAAA
CAAGCAAGTGGGAAAGACGGGGTGTCCCTACTTACGCAAGTTCAGGGCCC
CACCCCCGGAAGCCCTTCCTTTCACTCGCCTTCACTTGCAGGGCATAAAA
TGTATTGTACTTGGAAGTAGTAGGTGGAAGTAGTCGGGTTCGATGGGTAC
TCTTGTATTTGGCATGGGTGTTTATCGGTTTGAGTTTTCATGATGTAAAG
GCGAGTGATACGGGATAATGTGCGTGTTGTATGATGTAATGTTCCGGTGA
TCCACGCGTCTGTGAAGGCACTGCGAAGGACATGTTTTGCTAAATGAGCA
AATGGCTCGGTCGGGCAGCCAGAGAGTAACTTGGGCCACCCACCACCACC
AACCCCACCACCCAACCAGCCCGCCCACAGTGACTCCATCATGCTTACAC
ATAGACATTGCACTCGACATGGCACACGAGACATGCCAGCACTTGCACGA
GTACGTCTCCCAGCCCTTTCCTGATACTCAAGTCTGGGCACCGTGCACAA
GTAAGTACCCTCGCTGCATGGCGACCGCATGGAATATGACTACTCCGCCG
GCCACACCCGCCACCCCCCCTGCCCCTCCCCCTGCCCTCCTTCCTTCCCT
CCTTGCCCAGTCGACCTGCTGCAACGACGGTCCACACGCGACACAATCAC
CGAAACACGATCCCGTCCGCCCTTTTTGCCGCCCAACCAAAACAGGCAGC
ATAGTCGGGGGGGGCAGCAATGACCTTTGGAATGAACGGTTGCCTCGGCT
GCCCCCGCCCACCTCCCACGACGTGTCGCGGGAATTGGCATAAAATTGAA
ACAGGTGGGCCCAGCCTTCTCCTCCCGGTCTGTGGAAGCCCTCGTGGCCG
CCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:576880..579384-

>mRNA_S-ischiensis_contig11.2034.1 ID=mRNA_S-ischiensis_contig11.2034.1|Name=mRNA_S-ischiensis_contig11.2034.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig11:576880..579384- (Schizocladia ischiensis KU_0333)
ATGTATACGGCCCTGCTGCAGCCGCTGCTTCAGGACCTCTGGCGCGTTGC
CGCCGCCTTGGAAGATGTATACGGCCCTGCTGCAGCCGCTGCTTCAGGAC
CTCTGGCGCGTTGCCGCCGCCTTGGAAGCGGGGCAACAGGTCTCTGCCGA
GGATTTAGAAGGCGTGCGCAGCAGCTGCCGCGTCCTGGGCCGTCTCTGCT
GGAGCCTGGCCTCCACTGCCCCGAGGGCACGCAGCGGGGCAACAGGTCTC
TGCCGAGGATTTAGAAGGCGTGCGCAGCAGCTGCCGCGTCCTGGGCCGTC
TCTGCTGGAGCCTGGCCTCCACTGCCCCGAGGGCACGCAGGATACTGCGT
GATGCCGTGGGGCCTGCACTGCCCCACTCCGTCTCCATCCTCACGCCGCT
CGTGGCGGGGGCGGGCTCCAGCTCGGAGGTGTCGGCGGCAGCGCAGGCCT
TGTTGGCCCTGGTGCGGGCGGTGATTGCAAGCATTGGCCAGGAGGATACT
GCGTGATGCCGTGGGGCCTGCACTGCCCCACTCCGTCTCCATCCTCACGC
CGCTCGTGGCGGGGGCGGGCTCCAGCTCGGAGGTGTCGGCGGCAGCGCAG
GCCTTGTTGGCCCTGGTGCGGGCGGTGATTGCAAGCATTGGCCAGGAGGT
GGGCCCAGCCTTCTCCTCCCGGTCTGTGGAAGCCCTCGTGGCCGCCTGGG
TGGGCCCAGCCTTCTCCTCCCGGTCTGTGGAAGCCCTCGTGGCCGCCTGG
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