mRNA_S-ischiensis_contig11.1986.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1986.1
Unique NamemRNA_S-ischiensis_contig11.1986.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1986.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.260e-50
Identity = 107/196 (54.59%), Postives = 136/196 (69.39%), Query Frame = 1 
Query:   76 PTERITLRVRMPDGGVKRVQAGQSDTIGRMVARLGDSIDGAGGAKGGLGLCTAAEVEPAAESATVASLGLKHGDFLYAKSAAAKEVAATAKAASLERMKAAAAA-QVEENVFVPFPSLARPKAPKASKRVKTWQDLEALQAQTFSLKPQKTSNVKNMSLDNGIMEDFAGYLQQKKLKKHRCALLFGVVNPKTKTIK 660
            P   +TLRVRMPDG VKRV+A  +DTI  ++ +LG    G GG+  GL    +A    A  + +VA+LGL +GDFLY KS +A   AA AK+ +L RMKAA    +   + FVPFP  ARP  P+A+KRVKTWQD+EA+QAQTFSLKPQK SNVK +S++   M+DF GYL+Q  L+KHRCALLFG V+P T  +K
Sbjct:   76 PGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGME-KGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVGYLKQTGLRKHRCALLFGRVSPSTNGVK 270
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW6_ECTSI2.260e-5054.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:228603..232431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-02_003900.1
Exons5
Model size776
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1986.1prot_S-ischiensis_contig11.1986.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 228603..232431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3908947-CDS-S-ischiensis_contig11:228602..2289141622815587.3908947-CDS-S-ischiensis_contig11:228602..228914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 228603..228914 +
1695739786.9182312-CDS-S-ischiensis_contig11:228602..2289141695739786.9182312-CDS-S-ischiensis_contig11:228602..228914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 228603..228914 +
1622815587.4133935-CDS-S-ischiensis_contig11:229280..2293991622815587.4133935-CDS-S-ischiensis_contig11:229280..229399Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 229281..229399 +
1695739786.9364886-CDS-S-ischiensis_contig11:229280..2293991695739786.9364886-CDS-S-ischiensis_contig11:229280..229399Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 229281..229399 +
1622815587.426193-CDS-S-ischiensis_contig11:230210..2303571622815587.426193-CDS-S-ischiensis_contig11:230210..230357Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 230211..230357 +
1695739786.9484324-CDS-S-ischiensis_contig11:230210..2303571695739786.9484324-CDS-S-ischiensis_contig11:230210..230357Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 230211..230357 +
1622815587.4363136-CDS-S-ischiensis_contig11:231234..2313161622815587.4363136-CDS-S-ischiensis_contig11:231234..231316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 231235..231316 +
1695739786.9593687-CDS-S-ischiensis_contig11:231234..2313161695739786.9593687-CDS-S-ischiensis_contig11:231234..231316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 231235..231316 +
1622815587.4463618-CDS-S-ischiensis_contig11:232317..2324311622815587.4463618-CDS-S-ischiensis_contig11:232317..232431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 232318..232431 +
1695739786.9703932-CDS-S-ischiensis_contig11:232317..2324311695739786.9703932-CDS-S-ischiensis_contig11:232317..232431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 232318..232431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1986.1

>prot_S-ischiensis_contig11.1986.1 ID=prot_S-ischiensis_contig11.1986.1|Name=mRNA_S-ischiensis_contig11.1986.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=258bp
MLWGGVLVGALSLLAGQAGGSSVGPPTERITLRVRMPDGGVKRVQAGQSD
TIGRMVARLGDSIDGAGGAKGGLGLCTAAEVEPAAESATVASLGLKHGDF
LYAKSAAAKEVAATAKAASLERMKAAAAAQVEENVFVPFPSLARPKAPKA
SKRVKTWQDLEALQAQTFSLKPQKTSNVKNMSLDNGIMEDFAGYLQQKKL
KKHRCALLFGVVNPKTKTIKVHAMFEPQQRAADSSVYDPSALLAAAAAEA
ADGPQEAG
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mRNA from alignment at S-ischiensis_contig11:228603..232431+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1986.1 ID=mRNA_S-ischiensis_contig11.1986.1|Name=mRNA_S-ischiensis_contig11.1986.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3829bp|location=Sequence derived from alignment at S-ischiensis_contig11:228603..232431+ (Schizocladia ischiensis KU_0333)
ATGTTGTGGGGGGGGGTGTTGGTGGGGGCACTGTCCCTGCTGGCTGGACA
GGCTGGCGGGTCGTCGGTGGGACCACCTACCGAACGCATAACTCTGCGCG
TGCGTATGCCTGACGGTGGGGTGAAACGCGTGCAGGCCGGGCAGTCCGAC
ACAATCGGCCGCATGGTGGCACGGCTCGGTGACAGTATTGACGGAGCCGG
GGGGGCGAAGGGGGGGCTGGGATTGTGTACAGCGGCGGAAGTGGAGCCAG
CAGCAGAGTCGGCGACCGTTGCGTCGCTGGGGCTCAAGCACGGGGACTTT
TTGTACGCCAAGGTCAGTGTGCATCGACGTCAAGTTGCAGTTTTGGGGCA
CGAGATGCCGAGTCCACGCCTTGGCAGCCGCGACCCCTCGGCCCAATTGC
TGGCCGACCAGTGCCCTCTTGTATGGAACAGTAAACGGCCACGGCTGTGG
AGGTGAAGAATGCTGCCCCTTTCACAACATACCCGCTGCGCCTTGGCTGC
GCTGTTCCGGCCATATTCCACTGTGAGAAGACACCGCCGGCCCCTCAGCC
ATGGCTCAGCACGAAGGTCGGTTTTGATGTGGTTACCGGCATGCACAATT
GAACACGCCACCCCCCCCCGTTTTCTCTGTACGCAATGCGACCCTTGCCA
ACAATACGCGCCCCTCCTCTGTGCAAAGAGTGCTGCGGCTAAGGAGGTGG
CTGCGACTGCCAAGGCGGCCAGTCTGGAGAGGATGAAGGCCGCAGCGGCT
GCACAAGTAGAGGAAAATGTCTTCGTCCCTTTCCCCTCCTTGGCCAGGTG
ACACCATGGGCGGGGGGCTGTGCGTGTGCTGTGTCTTTTCTTTCTATTCC
TCTTCTTGTCTGTGTCCGTGCCTGTATCTGTGTTGTCATGGTTGTTTGTA
TGTTCACCTCGGGCTGGCGTGCCAGCTGACAGACAACGCGGTCACGGTTA
ATTGCCGCAAACAAGGAGAGCGCGTGTGCAAGACCGGTGTGTGCGCGCGT
GTGAGCGTGCTTGCGCACGTATAGTATGCACTCTCTCAGGGCAACCTTCT
TGTCCCTCAGTACGCTGGCATGCAGTCAAAACTCGTTTCCTTGCATGGAT
TCTTCAGTCCCGCCTGTCTCTGTTAGCTCTGCCTGCCTTGCCTGGGAGGC
TGCCAGTCAGTCCCACCCACAGCGGTTTGCCGTGCCCCTCACCCTGACAC
AATCGCACGTGATACCACCAAACCCGTCTACTTTCCGTGTGCGAAACACA
TCTACAGTGGAGATCTGTGTGCATTCACGGCACCCCCCGGCCCTTCCTTC
TGCCAGGACTGGTCTTAGTCCATCCACTTTGTGCCCGCCTTGTGAGCAGT
ATTCGACATTGTTTACAGTACAGTAGTCATCTCCCCGGAATACGCCCATC
TTTGTGCCCGCCTTGTGGGCACTATTTGACATTCTTTGCAGTAGCCATCT
CCCCGAAATACGCCCGTCCGCCCGAAGCCCCACACACATCCATCTTGATC
TCCAGCCCCACCGGCTGACCCTGGCCCTCGCTCCGTCCCCGGCCCGGCAC
CGGCACTGCTCGTTTGTATGCTTCGCTGCCCCCCCCCCGCGGATCCCCCT
TGGGCCAGGCCCAAGGCGCCTAAGGCGTCGAAGCGGGTGAAGACATGGCA
GGACCTGGAAGCTCTCCAGGCCCAGACCTTCTCCCTAAAGCCGCAGAAGA
CTTCCAACGTGAAGAATATGAGCCTGGACAATGGTATCATGGAGGACTTT
GCCGGGTGGGTGCCTTTGTTTGGGGGGGGGGGGGGGGGGGGGGAGGGAGG
GAGGGAGGGAGGGAAGTAAATGAGTTTTTGGTCGGGTTTGATGCTGGAAG
TGGCAAGGTCTTTCCATGGGGCTAGCCAGCCACAGTGAGCGGGTTGGGGT
AGGGGTGTGGGAGGGAGGGAGGGAGGGAGAGAAATGAGTTTTTGGTCGGG
CGTGATGCTGGAAGTGGCGACGTCTTTCCATGGGGCTACTTAGCCAGCCA
CGGGGAGCGGGCTGCAGGCATGTTTGTGTCCGAGTACTGTACTAGCAGTA
TCCACCTGCAATCGGTATGCCCTGTACCCGCTCTGGTCGGCCAAGTGGCG
TTTAGTTGGTCAGGTGCAAGCACGTGTGCTTTACCTGGAAACTGTGCAGT
ACTCGTACGAGTACCGTACAGTAGTACTTCCTTCCAAGTACAGTACATGC
TGAGACGCAACAAGCGTGGCCCTCGACCAGGCGTGGGGACGAGTCTGCGA
AACGCTCCAGCCCAGGCCGCTGCCCCTCTCCTGCCCCCCTGCCTGCGCTC
TCTATCTGCCTGTCAGCCCACCCGCCCGTGAGCGCCCCTCTGGCCGTCAC
AGTTCCTCCCTGACCACCTCCCTCGCCCGCCAACCCGCCTGCCCACCCGT
CTTGTTCTTAGTTCATTGATGTGATAATCACCAATATAATAGCATTCGAT
TCTTAAATGAAACAACTGCTAATACGAGAACAGTCAATCGCACACACATG
CGATTGTACCTCATTGCAATTTATATGAATCACCGCCAACCCGCCTGCCT
TGCCTGCGCACCCGCCCGCTGACTTGCCCCTGCCCGCCTACCTGCCTCCC
TGGCCGTGTGAAACAATATCCTTTTGACAAAGGTACCTCCAGCAGAAGAA
GCTGAAAAAGCACCGCTGCGCCCTGCTTTTCGGCGTGGTTAACCCCAAAA
CCAAGACCATCAAGGTGAACAGGAGACCCCAGGACGCCACGGGCCCGTTT
AAGCACAGTGATGTTCTATCGATCAGTAGATAGTTATCGGGCTCGACTGA
TTTTGTGTGTGGCATTACTATCTACTTGGATTTAGTGTGGGTCAAACTGT
CGAATATCGACTATCCATAGATACATAGATCAGTACTGTCGATAAATAGG
ATGAATTGCTTAGATATTCCATCACTGTTTAGGGGGGGGGCGGGGAGGAA
GTGGGCGGGTGGTTTGCGTGGCTTGCGCGGGGTGGGGGGCGCCTGCCCCA
CCCACACTTGTGCAGGCCAGCGCAACCAGCCGCTGCACACGGGGCCGGTG
TCAGACGTGGCGCGTGCGGGGGCTTGTTTTCCGGGTACTTGGAATCACGC
AGTAGAGTACGAGGACTGTTCTGTGCCTGCACACAGTCGTGGCCGGGTCA
TTGTCTTGGCCCTTGCTGTGTGCGTGGGAGGTAAAGTAGGAGTCGACCCT
GAGCGAGCCGCGGTCACCGATGTTGTCGTGTTCCTGGGAGTGCTTATGCA
CAGTAAACGGCGTACTGAGTACTTGGAATTACTACAGTACATGTAGTACT
GCACTTGGAAGTACTTCCAAGCACTTCCAAGTACTAGTGTACAGTACACC
GACGATTGCCCGTTTGCCGTGCGGTGACTGCCAGCGCACACGCCATGTGC
CTGCCCCCGACACGGGGGGCTGACGAGCTCACAACGTACCCTCCTCCCAG
CCCAGCCGCTTTCTTTTTCTCTCGTTTGCTGCTGCTCTTCCCCCCCCCTT
CCCCCTTTCCTTCCCTTTCTTCCTCGGCACATCCCTCCTTCCCCGCCTAC
CTACCTACCTCGTACCTTCTTCGAAGTACCTCCCTAGAAACTACCCCCTG
CCTCCCTCTTCCATCCCTCCACACTCCATCCCCCCGCCCTTTCCCCCTCC
GTGTCTCCCGCCTCGTTCCCTAACCCGCTCCGCCCCTGCCTCGCCTCCTA
CGTTTTACCTCGCAGGTGCACGCCATGTTCGAGCCCCAGCAGAGAGCGGC
CGACTCCTCTGTGTACGACCCATCTGCGCTCCTTGCCGCCGCCGCCGCTG
AAGCCGCTGACGGCCCCCAGGAGGCAGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:228603..232431+

>mRNA_S-ischiensis_contig11.1986.1 ID=mRNA_S-ischiensis_contig11.1986.1|Name=mRNA_S-ischiensis_contig11.1986.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1548bp|location=Sequence derived from alignment at S-ischiensis_contig11:228603..232431+ (Schizocladia ischiensis KU_0333)
ATGTTGTGGGGGGGGGTGTTGGTGGGGGCACTGTCCCTGCTGGCTGGACA
GGCTGGCGGGTCGTCGGTGGGACCACCTACCGAACGCATAACTCTGCGCG
TGCGTATGCCTGACGGTGGGGTGAAACGCGTGCAGGCCGGGCAGTCCGAC
ACAATCGGCCGCATGGTGGCACGGCTCGGTGACAGTATTGACGGAGCCGG
GGGGGCGAAGGGGGGGCTGGGATTGTGTACAGCGGCGGAAGTGGAGCCAG
CAGCAGAGTCGGCGACCGTTGCGTCGCTGGGGCTCAAGCACGGGGACTTT
TTGTACGCCAAGATGTTGTGGGGGGGGGTGTTGGTGGGGGCACTGTCCCT
GCTGGCTGGACAGGCTGGCGGGTCGTCGGTGGGACCACCTACCGAACGCA
TAACTCTGCGCGTGCGTATGCCTGACGGTGGGGTGAAACGCGTGCAGGCC
GGGCAGTCCGACACAATCGGCCGCATGGTGGCACGGCTCGGTGACAGTAT
TGACGGAGCCGGGGGGGCGAAGGGGGGGCTGGGATTGTGTACAGCGGCGG
AAGTGGAGCCAGCAGCAGAGTCGGCGACCGTTGCGTCGCTGGGGCTCAAG
CACGGGGACTTTTTGTACGCCAAGAGTGCTGCGGCTAAGGAGGTGGCTGC
GACTGCCAAGGCGGCCAGTCTGGAGAGGATGAAGGCCGCAGCGGCTGCAC
AAGTAGAGGAAAATGTCTTCGTCCCTTTCCCCTCCTTGGCCAGAGTGCTG
CGGCTAAGGAGGTGGCTGCGACTGCCAAGGCGGCCAGTCTGGAGAGGATG
AAGGCCGCAGCGGCTGCACAAGTAGAGGAAAATGTCTTCGTCCCTTTCCC
CTCCTTGGCCAGGCCCAAGGCGCCTAAGGCGTCGAAGCGGGTGAAGACAT
GGCAGGACCTGGAAGCTCTCCAGGCCCAGACCTTCTCCCTAAAGCCGCAG
AAGACTTCCAACGTGAAGAATATGAGCCTGGACAATGGTATCATGGAGGA
CTTTGCCGGGCCCAAGGCGCCTAAGGCGTCGAAGCGGGTGAAGACATGGC
AGGACCTGGAAGCTCTCCAGGCCCAGACCTTCTCCCTAAAGCCGCAGAAG
ACTTCCAACGTGAAGAATATGAGCCTGGACAATGGTATCATGGAGGACTT
TGCCGGGTACCTCCAGCAGAAGAAGCTGAAAAAGCACCGCTGCGCCCTGC
TTTTCGGCGTGGTTAACCCCAAAACCAAGACCATCAAGGTACCTCCAGCA
GAAGAAGCTGAAAAAGCACCGCTGCGCCCTGCTTTTCGGCGTGGTTAACC
CCAAAACCAAGACCATCAAGGTGCACGCCATGTTCGAGCCCCAGCAGAGA
GCGGCCGACTCCTCTGTGTACGACCCATCTGCGCTCCTTGCCGCCGCCGC
CGCTGAAGCCGCTGACGGCCCCCAGGAGGCAGGAGTGCACGCCATGTTCG
AGCCCCAGCAGAGAGCGGCCGACTCCTCTGTGTACGACCCATCTGCGCTC
CTTGCCGCCGCCGCCGCTGAAGCCGCTGACGGCCCCCAGGAGGCAGGA
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