prot_S-ischiensis_contig11.1986.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig11.1986.1
Unique Nameprot_S-ischiensis_contig11.1986.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length258
Homology
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BLAST of mRNA_S-ischiensis_contig11.1986.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.260e-50
Identity = 107/196 (54.59%), Postives = 136/196 (69.39%), Query Frame = 0 
Query:   26 PTERITLRVRMPDGGVKRVQAGQSDTIGRMVARLGDSIDGAGGAKGGLGLCTAAEVEPAAESATVASLGLKHGDFLYAKSAAAKEVAATAKAASLERMKAAAAA-QVEENVFVPFPSLARPKAPKASKRVKTWQDLEALQAQTFSLKPQKTSNVKNMSLDNGIMEDFAGYLQQKKLKKHRCALLFGVVNPKTKTIK 220
            P   +TLRVRMPDG VKRV+A  +DTI  ++ +LG    G GG+  GL    +A    A  + +VA+LGL +GDFLY KS +A   AA AK+ +L RMKAA    +   + FVPFP  ARP  P+A+KRVKTWQD+EA+QAQTFSLKPQK SNVK +S++   M+DF GYL+Q  L+KHRCALLFG V+P T  +K
Sbjct:   76 PGSPLTLRVRMPDGAVKRVKATGADTIDGILGKLGME-KGDGGSGEGLSTDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVGYLKQTGLRKHRCALLFGRVSPSTNGVK 270
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1986.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW6_ECTSI2.260e-5054.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 27..105
e-value: 2.5E-7
score: 33.1
NoneNo IPR availablePANTHERPTHR12710NUCLEAR PROTEIN LOCALIZATION 4coord: 163..232
coord: 32..129
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:228603..232431 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1986.1mRNA_S-ischiensis_contig11.1986.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig11 228603..232431 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig11.1986.1 ID=prot_S-ischiensis_contig11.1986.1|Name=mRNA_S-ischiensis_contig11.1986.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=258bp
MLWGGVLVGALSLLAGQAGGSSVGPPTERITLRVRMPDGGVKRVQAGQSD
TIGRMVARLGDSIDGAGGAKGGLGLCTAAEVEPAAESATVASLGLKHGDF
LYAKSAAAKEVAATAKAASLERMKAAAAAQVEENVFVPFPSLARPKAPKA
SKRVKTWQDLEALQAQTFSLKPQKTSNVKNMSLDNGIMEDFAGYLQQKKL
KKHRCALLFGVVNPKTKTIKVHAMFEPQQRAADSSVYDPSALLAAAAAEA
ADGPQEAG
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