mRNA_S-ischiensis_contig11.1976.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1976.1
Unique NamemRNA_S-ischiensis_contig11.1976.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A7K4R6Q1_9TYRA (DCTN1 protein (Fragment) n=1 Tax=Neopipo cinnamomea TaxID=456388 RepID=A0A7K4R6Q1_9TYRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.490e-19
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:   38 GKPSTLPGPGAPRAVARSRGTHHDTEYEPLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            G P        PR  A + G        PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  ++GA  T+P
Sbjct:    5 GCPPRSQASSTPRMSAEAGG-------RPLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPRGKNDGTVQGRKYFTCEENHGIFVRQSQIQVFEDGADTTSP 106
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A0S7F4E4_9TELE (DCTN1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7F4E4_9TELE)

HSP 1 Score: 89.7 bits (221), Expect = 9.100e-19
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  131 LGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            +G +V    +G+ GTV + G T F SG WVGI LDEP G++DG+  G +YFTCE NHGIF R + ++ +D+G+ AT+P
Sbjct:    1 IGSKVEVTGKGQQGTVAYIGATLFASGKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSAATSP 78
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: UPI000FD6880F (dynactin subunit 1-like n=2 Tax=Pipridae TaxID=114313 RepID=UPI000FD6880F)

HSP 1 Score: 90.1 bits (222), Expect = 3.480e-18
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  122 PLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  ++GA  T+P
Sbjct:   26 PLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPRGKNDGTVQGRKYFTCEENHGIFVRQSQIQVFEDGADTTSP 106
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: UPI000462E6F1 (dynactin subunit 1 isoform X8 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI000462E6F1)

HSP 1 Score: 95.9 bits (237), Expect = 4.350e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:   83 ARSRGTHHDTEYEPLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNPSETARPSTTGLDRR 406
            A SR +  +   +PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  D+GA  T+P ET   ST+ + +R
Sbjct:   18 ASSRMSSVEASGKPLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPKGKNDGTVQGRRYFTCEENHGIFVRQSQIQVFDDGADTTSP-ETPESSTSKVPKR 124
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A803TW73_ANOCA (Dynactin subunit 1 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TW73_ANOCA)

HSP 1 Score: 95.9 bits (237), Expect = 4.350e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:   83 ARSRGTHHDTEYEPLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNPSETARPSTTGLDRR 406
            A SR +  +   +PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  D+GA  T+P ET   ST+ + +R
Sbjct:   18 ASSRMSSVEASGKPLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPKGKNDGTVQGRRYFTCEENHGIFVRQSQIQVFDDGADTTSP-ETPESSTSKVPKR 124
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: H9GAJ5_ANOCA (Dynactin subunit 1 n=8 Tax=Episquamata TaxID=1329912 RepID=H9GAJ5_ANOCA)

HSP 1 Score: 95.9 bits (237), Expect = 4.360e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:   83 ARSRGTHHDTEYEPLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNPSETARPSTTGLDRR 406
            A SR +  +   +PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  D+GA  T+P ET   ST+ + +R
Sbjct:   18 ASSRMSSVEASGKPLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPKGKNDGTVQGRRYFTCEENHGIFVRQSQIQVFDDGADTTSP-ETPESSTSKVPKR 124
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: UPI000FFD0317 (dynactin subunit 1-like n=1 Tax=Empidonax traillii TaxID=164674 RepID=UPI000FFD0317)

HSP 1 Score: 90.1 bits (222), Expect = 4.780e-18
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  122 PLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            PL++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++  ++GA  T+P
Sbjct:    9 PLKVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEPRGKNDGTVQGRKYFTCEENHGIFVRQSQIQVFEDGADTTSP 89
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A6F9BIG3_9TELE (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9BIG3_9TELE)

HSP 1 Score: 86.7 bits (213), Expect = 1.430e-17
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  128 QLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            ++G RV    +G  GTV + G T F +G WVG+ LDEP G++DG+  G +YFTC  NHGIF R++ ++ +D+GA  T+P
Sbjct:   19 KVGSRVEVIGKGHRGTVAYIGATLFSTGKWVGVILDEPKGKNDGTVQGKRYFTCHENHGIFVRQSQIQLVDDGADTTSP 97
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A3B3WDL4_9TELE (Dynactin subunit 1 n=1 Tax=Poecilia mexicana TaxID=48701 RepID=A0A3B3WDL4_9TELE)

HSP 1 Score: 92.0 bits (227), Expect = 8.170e-17
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:  125 LQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNP 364
            LQ+G +V    +G+ GTV + G T F SG WVGI LDEP G++DG+  G +YF+CE NHGIF R + ++ +D+G+ AT+P
Sbjct:   10 LQIGSKVEVTGKGQQGTVAYIGATLFASGKWVGIILDEPKGKNDGTVQGKRYFSCEENHGIFVRSSQIQVIDDGSAATSP 89
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BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Match: A0A3P8S583_AMPPE (Dynactin subunit 1 n=15 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P8S583_AMPPE)

HSP 1 Score: 92.0 bits (227), Expect = 8.550e-17
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:  122 PLQLGCRVITQPRGRTGTVRHYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVERLDNGAGATNPSETARPST 388
            P+++G  V    +G+ GTV + G T F SG WVG+ LDEP G++DG+  G +YFTCE NHGIF R++ ++ +D+GA  T+P ET  P T
Sbjct:   28 PVKVGSLVEVIGKGQRGTVAYIGTTLFASGKWVGVILDEPKGKNDGTVQGKRYFTCEENHGIFVRQSQIQLVDDGADTTSP-ETPEPGT 115
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K4R6Q1_9TYRA7.490e-1941.28DCTN1 protein (Fragment) n=1 Tax=Neopipo cinnamome... [more]
A0A0S7F4E4_9TELE9.100e-1950.00DCTN1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
UPI000FD6880F3.480e-1848.15dynactin subunit 1-like n=2 Tax=Pipridae TaxID=114... [more]
UPI000462E6F14.350e-1844.44dynactin subunit 1 isoform X8 n=1 Tax=Anolis carol... [more]
A0A803TW73_ANOCA4.350e-1844.44Dynactin subunit 1 n=1 Tax=Anolis carolinensis Tax... [more]
H9GAJ5_ANOCA4.360e-1844.44Dynactin subunit 1 n=8 Tax=Episquamata TaxID=13299... [more]
UPI000FFD03174.780e-1848.15dynactin subunit 1-like n=1 Tax=Empidonax traillii... [more]
A0A6F9BIG3_9TELE1.430e-1746.84CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A3B3WDL4_9TELE8.170e-1750.00Dynactin subunit 1 n=1 Tax=Poecilia mexicana TaxID... [more]
A0A3P8S583_AMPPE8.550e-1748.31Dynactin subunit 1 n=15 Tax=Percomorphaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:161688..165927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.2
Seed ortholog evalue7.2e-18
Seed eggNOG ortholog28377.ENSACAP00000005639
Preferred nameDCTN1
KEGG koko:K04648
KEGG Pathwayko04962,ko05016,map04962,map05016
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000086,GO:0000132,GO:0000226,GO:0000235,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0001505,GO:0001654,GO:0001709,GO:0001738,GO:0001745,GO:0001751,GO:0001754,GO:0002009,GO:0002252,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005818,GO:0005819,GO:0005828,GO:0005829,GO:0005856,GO:0005868,GO:0005869,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005929,GO:0005938,GO:0006403,GO:0006582,GO:0006725,GO:0006810,GO:0006836,GO:0006886,GO:0006888,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006986,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007097,GO:0007098,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007338,GO:0007346,GO:0007349,GO:0007399,GO:0007409,GO:0007417,GO:0007423,GO:0007528,GO:0007610,GO:0008017,GO:0008088,GO:0008090,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010256,GO:0010389,GO:0010457,GO:0010564,GO:0010638,GO:0010769,GO:0010968,GO:0010970,GO:0010975,GO:0012505,GO:0015031,GO:0015629,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016330,GO:0016482,GO:0018958,GO:0019725,GO:0019748,GO:0019882,GO:0019884,GO:0019886,GO:0019896,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021510,GO:0021517,GO:0022008,GO:0022402,GO:0022406,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0023061,GO:0030010,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030397,GO:0030424,GO:0030496,GO:0030705,GO:0030855,GO:0030859,GO:0030968,GO:0031023,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031175,GO:0031252,GO:0031334,GO:0031344,GO:0031616,GO:0031967,GO:0031975,GO:0032252,GO:0032253,GO:0032271,GO:0032273,GO:0032386,GO:0032388,GO:0032400,GO:0032401,GO:0032402,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033157,GO:0033267,GO:0033365,GO:0033554,GO:0034453,GO:0034454,GO:0034501,GO:0034502,GO:0034613,GO:0034620,GO:0034643,GO:0034976,GO:0035006,GO:0035010,GO:0035011,GO:0035046,GO:0035047,GO:0035088,GO:0035089,GO:0035371,GO:0035966,GO:0035967,GO:0036477,GO:0036498,GO:0040001,GO:0040007,GO:0042051,GO:0042052,GO:0042147,GO:0042221,GO:0042440,GO:0042461,GO:0042462,GO:0042592,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043473,GO:0043679,GO:0043933,GO:0043954,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044456,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0045087,GO:0045111,GO:0045165,GO:0045184,GO:0045197,GO:0045198,GO:0045202,GO:0045505,GO:0045595,GO:0045664,GO:0046530,GO:0046903,GO:0046907,GO:0047496,GO:0047497,GO:0048002,GO:0048193,GO:0048285,GO:0048468,GO:0048489,GO:0048491,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048592,GO:0048646,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048812,GO:0048814,GO:0048856,GO:0048858,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050877,GO:0050896,GO:0050905,GO:0051028,GO:0051049,GO:0051050,GO:0051081,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051231,GO:0051233,GO:0051234,GO:0051236,GO:0051239,GO:0051255,GO:0051256,GO:0051276,GO:0051293,GO:0051294,GO:0051299,GO:0051383,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051642,GO:0051646,GO:0051647,GO:0051648,GO:0051649,GO:0051650,GO:0051653,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051875,GO:0051904,GO:0051905,GO:0051960,GO:0060236,GO:0060249,GO:0060271,GO:0060284,GO:0060341,GO:0060429,GO:0060560,GO:0061024,GO:0061162,GO:0061174,GO:0061176,GO:0061245,GO:0061339,GO:0061564,GO:0061670,GO:0061744,GO:0061842,GO:0065007,GO:0065008,GO:0070050,GO:0070201,GO:0070507,GO:0070727,GO:0070840,GO:0070887,GO:0070925,GO:0071310,GO:0071459,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072384,GO:0072393,GO:0090063,GO:0090087,GO:0090162,GO:0090224,GO:0090307,GO:0090316,GO:0090596,GO:0097435,GO:0097458,GO:0097479,GO:0097480,GO:0097711,GO:0098687,GO:0098793,GO:0098813,GO:0098916,GO:0098930,GO:0099003,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099514,GO:0099517,GO:0099518,GO:0099519,GO:0099536,GO:0099537,GO:0099558,GO:0099568,GO:0099643,GO:0099738,GO:0106027,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0120103,GO:0120111,GO:0140014,GO:0140056,GO:0150034,GO:1901360,GO:1901615,GO:1901950,GO:1901987,GO:1901990,GO:1902494,GO:1902749,GO:1902850,GO:1902903,GO:1902905,GO:1903047,GO:1903827,GO:1903829,GO:1904115,GO:1904396,GO:1904398,GO:1904951,GO:1905515,GO:1990049,GO:1990138,GO:1990535,GO:1990752,GO:2000026
EggNOG free text desc.microtubule binding
EggNOG OGs38CZ9@33154,3BIBV@33208,3CR4T@33213,486EW@7711,491PP@7742,COG5244@1,KOG0971@2759
COG Functional cat.D
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size979
Cds size948
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.6662357-UTR-S-ischiensis_contig11:161687..1617181622815586.6662357-UTR-S-ischiensis_contig11:161687..161718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 161688..161718 +
1695739786.2867854-UTR-S-ischiensis_contig11:161687..1617181695739786.2867854-UTR-S-ischiensis_contig11:161687..161718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 161688..161718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.6858847-CDS-S-ischiensis_contig11:161718..1618671622815586.6858847-CDS-S-ischiensis_contig11:161718..161867Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 161719..161867 +
1695739786.308182-CDS-S-ischiensis_contig11:161718..1618671695739786.308182-CDS-S-ischiensis_contig11:161718..161867Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 161719..161867 +
1622815586.6986837-CDS-S-ischiensis_contig11:162230..1624091622815586.6986837-CDS-S-ischiensis_contig11:162230..162409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 162231..162409 +
1695739786.3204536-CDS-S-ischiensis_contig11:162230..1624091695739786.3204536-CDS-S-ischiensis_contig11:162230..162409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 162231..162409 +
1622815586.7110431-CDS-S-ischiensis_contig11:163065..1632351622815586.7110431-CDS-S-ischiensis_contig11:163065..163235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 163066..163235 +
1695739786.3447688-CDS-S-ischiensis_contig11:163065..1632351695739786.3447688-CDS-S-ischiensis_contig11:163065..163235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 163066..163235 +
1622815586.725603-CDS-S-ischiensis_contig11:164723..1648211622815586.725603-CDS-S-ischiensis_contig11:164723..164821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 164724..164821 +
1695739786.358505-CDS-S-ischiensis_contig11:164723..1648211695739786.358505-CDS-S-ischiensis_contig11:164723..164821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 164724..164821 +
1622815586.7371702-CDS-S-ischiensis_contig11:165296..1654261622815586.7371702-CDS-S-ischiensis_contig11:165296..165426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 165297..165426 +
1695739786.374999-CDS-S-ischiensis_contig11:165296..1654261695739786.374999-CDS-S-ischiensis_contig11:165296..165426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 165297..165426 +
1622815586.7478127-CDS-S-ischiensis_contig11:165705..1659271622815586.7478127-CDS-S-ischiensis_contig11:165705..165927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 165706..165927 +
1695739786.389332-CDS-S-ischiensis_contig11:165705..1659271695739786.389332-CDS-S-ischiensis_contig11:165705..165927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 165706..165927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1976.1prot_S-ischiensis_contig11.1976.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 161719..165927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1976.1

>prot_S-ischiensis_contig11.1976.1 ID=prot_S-ischiensis_contig11.1976.1|Name=mRNA_S-ischiensis_contig11.1976.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=316bp
MFGKPSTLPGPGAPRAVARSRGTHHDTEYEPLQLGCRVITQPRGRTGTVR
HYGPTEFQSGLWVGIELDEPTGRHDGSHDGIQYFTCEANHGIFCRRNAVE
RLDNGAGATNPSETARPSTTGLDRRRTRTPAGTPGRGGAKGRASVGGHGR
GLSPHRVPSAGSLVSEGSGGAAKGSIMTRIDQALHDGEGVDQPVGLKARG
KRGSVASSAASSGRDLNYEVRVSQSLAEYLGSPAFQAQLGGMVDKRVNAE
LKARLAEDRPADAAATNGGTDASTAKHNTAAVAPEPLASLSKWGGGGGGG
GSASQRLESGAGGGAA
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mRNA from alignment at S-ischiensis_contig11:161688..165927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1976.1 ID=mRNA_S-ischiensis_contig11.1976.1|Name=mRNA_S-ischiensis_contig11.1976.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4240bp|location=Sequence derived from alignment at S-ischiensis_contig11:161688..165927+ (Schizocladia ischiensis KU_0333)
CATCATCAAGCTTGGCTGAGGCGGTTGAGCGATGTTTGGCAAACCCTCTA
CCCTACCAGGGCCAGGCGCGCCCCGCGCCGTGGCAAGGAGTAGGGGCACG
CATCACGATACGGAGTACGAGCCGCTTCAGTTGGGCTGCAGGGTGATCAC
ACAGCCGCGAGGTCGCACCGGGACTGTCAGGTCAGGTTGCGGGTGGAAAA
CAAGACAGGAACTCACAGGAGGCCGCTATTCGTGTGTTCCGAGTGAACGG
ATGGCTGCTTCGTGTGTGGAGAATGCACAGATTGCTGCCCCGCCAGCGGA
CGTGAGTAGCGTGCTCCGCTACCCGCGGTTTGCAGCGAGCAGGATCCTTG
ATCGCCGTCGAGCCGATTCTCCGTTTCCGCACGGGGCGCTCTCAGCGACT
CTCACAGCCGGCACCAGCAGGGTGTATCGAACCGCCCGCCCTGAAACCTA
GGTGCTGCATGCCGCTCGCTGTGGCTTTGCCCCCCCCCAGCTCCACAGCC
GCCTGACTGTTCCCTGTGGCCTCGTCGCATGCTCGATGCACAGGCACTAC
GGCCCGACGGAGTTTCAATCCGGCCTATGGGTTGGGATCGAGCTCGACGA
GCCAACGGGTCGTCATGATGGTTCGCATGATGGCATCCAGTACTTCACGT
GCGAGGCGAACCACGGCATTTTCTGCCGGAGGAACGCGGTCGAGCGCCTC
GACAATGGTGCCGGGGCCACAAGTGCGTTGCCGTTTCTTTCCGCCAGCTG
TTGGAGCGCTGTTTGTTGTGAACCGCCCCCCCTTCCCCTCCCTCCGTACG
TGTACATGTTCAATGCACACAGAGAGCGACTCGTGCGGAACTCATACACC
CTGTGCCTTGCGGAGTATCCTTCAGTACATAAATCTCGCCGCTGCTACTT
ACGTAGGCGCTGCACTGCAGTAGAAAGGATTCCCGCTATGAACAGTCGAA
GCGGATTTACATTGTCCACGTATTTGACTGCCTAAATCGTATGGGCGCGA
AACAGTACACTTTGAAGTGCGTGTATACATACTAGTAGTGTCGGCGTGAC
AGACTACCGTATCTAAAAACTCAAAAGCAGGTACAGTACCTGTACGCATA
ACGAGTACGCACATATTGCCCACTTCGCCCCCACTCGATACAGTTCGCCC
AACGCACAGGCACTTACAAATCTAATTCGATCGTTCATAGCAGGGCTACA
ATAAGTAGGCACATAGCAAAGACGAGGATCGCTCGGGTCCAGGGCATGCA
CAGAGACGAGAAACATCGTCCGAATGTGAGTACACGCATACAGCACACCC
GCTGCCGACGCCAATGATCGCACGTAGAACAGCACGGCGAGCGTACCCCC
CTCCCCCCCTTCCCCCCTCCACCGGCAGACCCCTCTGAAACCGCCCGGCC
TTCCACCACTGGGCTGGACCGCCGACGCACAAGAACTCCTGCCGGGACCC
CGGGTCGGGGCGGGGCAAAAGGACGGGCCTCTGTTGGCGGTCATGGACGC
GGCTTGTCCCCTCACCGTGTGCCGTCCGCGGGCTCCCTGGTGTCAGAGGC
AAGTACTGTACTTCCGAGCACTCTGCAGGTGTACAGGTGCTGCAGTGCTC
GGTTGCTGCCAAGTGCTTTGATTTACTTTGATTGCACAGCGTCAAGTACT
TTGCTGTACCGCCCCAGGTGTTGGACGTGTGGGTGGGTCGCATGTGTGCG
TGCGTGCGTGCGTGTGTGCCTTGCCTCAGCTGTGCCTCGTGCGCTTTGAC
GGCGCAGCTACAGTACAGTGCCACAGTACTTTTCAGCGCAGTGTTCTGTG
GTAGCTGTGCTGCAGTGCTTGTAAGGTTGTTCGGGAAAGTGCTTTCGCTC
CTGACTATGATGCCCTTGGTGTTCCCAGAGTTACGGCAAGCCTGGCGTCG
TGGGCACACACACACACACACAAATGCGCGCACATGCACACGCACACACC
CATCGTGCGTGCACGCATACACGCACACACCCATAGAGTACGTACTCGAC
CCTACATGCGTGCTCGTATGAGAACATGCGCATGCGCACACAATAATAAC
CACGTGTTGGCACGTACACATTAGTAGCAGTGCTGCGCATCGCATGGTAT
CGGGTAATCGCGCATCGCGCGTCGCCGACGAATGTGGAGGTTGTATCGCA
CATGGAGCATGCCGGCAGGGATGCTTGCCATGTCCAACCGGTTGAAATTC
ATGGTGTGTTTGAGGCGACTACCGTAGTAGCCGGTGACTTTGTAGCGTAT
TACTGCTCCGTCTCGACCGAGCCGCGTGGTCAATGGTCCCGGGACTATGG
CAAGCACAACGTGAGTACGAGTACACATATTACCATTGTGCACCAGCATC
TGTATAGCCGCCACCAACAAGGCACATTGAATCGCTGCTACTACATCGCG
CCCTTTGCCCGACATCCAATCGCGGCACCGGAACCTTGCCGATGCACAGC
GCTACACATATAGTTCTGTACACAATTCACACAACGCGAACACAGACACA
ATTGCGTAGAGTACTTTGCGTTCCTTTTGCAAGCGCTTGAGTCCCAGCCC
AGCTAAGTACGTGATGCACTACATTAGTAGGTGTACTAGTGAAACTGAAC
TCCTGTGTGCCCGAGTATGCACCGACGGTTCCGACTGTACGTTACGTCTC
CCGCCCCCTCCGGCCAGCGCCGGCCGCCCGTGGTCAAACGGCTGCTCTAC
GACAGACAACTCATGAGGAGTGCCCCCAGTGATGGAACATCGATTGGTAT
AGTATCGGGCTTGACTGACTATGTGGGTGGCGCTACTAGCTACTTGGATG
TAGTGTGGGTCAAACTATCGCATATCGACTATCGATAGATATATACTTCG
AAGTACGTTGTACATCGTAGATCAGTACTGTCAATAGATAGGTCGATTTG
CTTACATATTCCATCGCCTGCTCCGCCTCGAACGAGGCGCGGGGTCAATG
GTCTCGGGACTACCGCAAGCACCACGTGGGTACATATATATATATCACTG
CCCCCCCCCAATGCGCTCCCCCCTGCCTGACTGCAGGGGTCGGGAGGCGC
GGCAAAGGGTTCCATCATGACGCGCATCGACCAGGCCCTTCACGACGGGG
AGGGGGTGGACCAGCCCGTGGGACTAAAGGCCAGGTGCGTACAAGTGCTG
TGCACTCGCACACATGCACGCACACACGCGCTCTTGCACACACACACACA
CAAAGTGTACGCCCTGCGAGCTACTTCGAAGTACACTGGTGGAACGGTTG
GTCTACAGTAGTCGCGTCTAGTCGCGGCGGCCGCGAGCACCGCAGAAGTG
CAGCCGCCGCTCCTGCCAACATGGACCGGTGCTTCTTTCATCGTCACTGC
AGTCCCGCCACCTGTCCATAGGCCCCCTAGAGCCTGGATGGTTCTTGCTG
CAGATGCCATGAAACGTGCCGGGCGTTGCCTCTGTCTGTCACCCCTGCCG
CCGCCGCCAGGGTTGGCACTTAGAGGTTAATTAGGGCCCAATTAGCCTTC
ATTTTAGGTCTAGCTACCCCTAGTTAAGGGCCCAAAAGGGCACCACTTAC
AGTAAGGGTTTTAAGTGCCAATGCTGGCCGCCGCTACCGCCGCCACCGCC
ACCGCCCAGGGGCAAGAGAGGTTCTGTGGCGTCCTCCGCGGCTAGCAGCG
GCAGAGACCTAAACTACGAGGTGCGAGTGAGTCAGTCGCTGGCAGAGTAC
CTGGGGAGCCCCGCCTTCCAAGCGCAACTGGGGGGCATGGTGAGTGCAGT
ATAGTAGGGCTACCATACACAGTATCCTGAATATATACTACTGTACTTTG
TTTGAATATGGTAGCCCCGCTGCGACCATATTCCGTATACCCCGTGCACT
GGAAGGCTTTCATCTGTGGGCCCGAGCCTGAGGTCCCGGGCCGCGCCATC
CTACAACCGGTCTTTCAAGTCTTTCACCCGAGCTACCTACTTGGAAGTAC
TTTGTTTGCAGCAACGCTTCACAAGGGACTCCCAAGAGTGTGCGCGCACC
CCACCTCCCCCCGCCCAGGTGGACAAGAGGGTCAATGCCGAGTTGAAGGC
CCGGCTGGCCGAGGATCGTCCCGCAGATGCAGCAGCCACAAACGGGGGCA
CCGACGCCTCCACCGCCAAGCACAACACCGCCGCCGTAGCCCCCGAACCG
CTGGCCTCCCTGAGCAAATGGGGCGGTGGCGGCGGCGGCGGCGGCAGCGC
TAGCCAGAGGTTAGAGTCTGGGGCCGGGGGGGGAGCGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:161688..165927+

>mRNA_S-ischiensis_contig11.1976.1 ID=mRNA_S-ischiensis_contig11.1976.1|Name=mRNA_S-ischiensis_contig11.1976.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1896bp|location=Sequence derived from alignment at S-ischiensis_contig11:161688..165927+ (Schizocladia ischiensis KU_0333)
ATGTTTGGCAAACCCTCTACCCTACCAGGGCCAGGCGCGCCCCGCGCCGT
GGCAAGGAGTAGGGGCACGCATCACGATACGGAGTACGAGCCGCTTCAGT
TGGGCTGCAGGGTGATCACACAGCCGCGAGGTCGCACCGGGACTGTCAGA
TGTTTGGCAAACCCTCTACCCTACCAGGGCCAGGCGCGCCCCGCGCCGTG
GCAAGGAGTAGGGGCACGCATCACGATACGGAGTACGAGCCGCTTCAGTT
GGGCTGCAGGGTGATCACACAGCCGCGAGGTCGCACCGGGACTGTCAGGC
ACTACGGCCCGACGGAGTTTCAATCCGGCCTATGGGTTGGGATCGAGCTC
GACGAGCCAACGGGTCGTCATGATGGTTCGCATGATGGCATCCAGTACTT
CACGTGCGAGGCGAACCACGGCATTTTCTGCCGGAGGAACGCGGTCGAGC
GCCTCGACAATGGTGCCGGGGCCACAAGCACTACGGCCCGACGGAGTTTC
AATCCGGCCTATGGGTTGGGATCGAGCTCGACGAGCCAACGGGTCGTCAT
GATGGTTCGCATGATGGCATCCAGTACTTCACGTGCGAGGCGAACCACGG
CATTTTCTGCCGGAGGAACGCGGTCGAGCGCCTCGACAATGGTGCCGGGG
CCACAAACCCCTCTGAAACCGCCCGGCCTTCCACCACTGGGCTGGACCGC
CGACGCACAAGAACTCCTGCCGGGACCCCGGGTCGGGGCGGGGCAAAAGG
ACGGGCCTCTGTTGGCGGTCATGGACGCGGCTTGTCCCCTCACCGTGTGC
CGTCCGCGGGCTCCCTGGTGTCAGAGACCCCTCTGAAACCGCCCGGCCTT
CCACCACTGGGCTGGACCGCCGACGCACAAGAACTCCTGCCGGGACCCCG
GGTCGGGGCGGGGCAAAAGGACGGGCCTCTGTTGGCGGTCATGGACGCGG
CTTGTCCCCTCACCGTGTGCCGTCCGCGGGCTCCCTGGTGTCAGAGGGGT
CGGGAGGCGCGGCAAAGGGTTCCATCATGACGCGCATCGACCAGGCCCTT
CACGACGGGGAGGGGGTGGACCAGCCCGTGGGACTAAAGGCCAGGGGTCG
GGAGGCGCGGCAAAGGGTTCCATCATGACGCGCATCGACCAGGCCCTTCA
CGACGGGGAGGGGGTGGACCAGCCCGTGGGACTAAAGGCCAGGGGCAAGA
GAGGTTCTGTGGCGTCCTCCGCGGCTAGCAGCGGCAGAGACCTAAACTAC
GAGGTGCGAGTGAGTCAGTCGCTGGCAGAGTACCTGGGGAGCCCCGCCTT
CCAAGCGCAACTGGGGGGCATGGGGCAAGAGAGGTTCTGTGGCGTCCTCC
GCGGCTAGCAGCGGCAGAGACCTAAACTACGAGGTGCGAGTGAGTCAGTC
GCTGGCAGAGTACCTGGGGAGCCCCGCCTTCCAAGCGCAACTGGGGGGCA
TGGTGGACAAGAGGGTCAATGCCGAGTTGAAGGCCCGGCTGGCCGAGGAT
CGTCCCGCAGATGCAGCAGCCACAAACGGGGGCACCGACGCCTCCACCGC
CAAGCACAACACCGCCGCCGTAGCCCCCGAACCGCTGGCCTCCCTGAGCA
AATGGGGCGGTGGCGGCGGCGGCGGCGGCAGCGCTAGCCAGAGGTTAGAG
TCTGGGGCCGGGGGGGGAGCGGCGGTGGACAAGAGGGTCAATGCCGAGTT
GAAGGCCCGGCTGGCCGAGGATCGTCCCGCAGATGCAGCAGCCACAAACG
GGGGCACCGACGCCTCCACCGCCAAGCACAACACCGCCGCCGTAGCCCCC
GAACCGCTGGCCTCCCTGAGCAAATGGGGCGGTGGCGGCGGCGGCGGCGG
CAGCGCTAGCCAGAGGTTAGAGTCTGGGGCCGGGGGGGGAGCGGCG
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