mRNA_S-ischiensis_contig11.1964.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1964.1
Unique NamemRNA_S-ischiensis_contig11.1964.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A6H5JMW3_9PHAE (GTP_cyclohydro2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMW3_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 3.070e-119
Identity = 192/292 (65.75%), Postives = 227/292 (77.74%), Query Frame = 3
Query:  249 LYMFGGVIVGPDANKLATV---LEHTDGATSGEDTDEEAPHSPARDAEPGFRSGLKRKAPGCLPGPGRTVRKGDATPRAPDGHAAARAKATGQGCTSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAV-IYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLINSL 1112
            L++FGGV VG  A    T    L   DG+   ED+   A    AR A+   R GLKRK  G +          DATPRAP+G AAA+AKA GQGCT+FVSEC+LPT+KG FRLR+YRY    K+HEPVVMVAG+VRGRE+V VRVHDQCQTSEVLGS+RCDCREQL +SL+++QEHGG V IYL QEGRGIGLANKVAAYALQD GLDTV+ANR+LGF DD+RSYECV+FIL DM +KSV+L+TNNP+K+ WLRA+GV V GR+P+ VP+NEHN  YL++KA RMSHLINSL
Sbjct:   43 LHLFGGVFVGKAAEAYWTAILQLRRGDGSCF-EDSQTGAARGDARRADGAIR-GLKRKRAGAMA-------SSDATPRAPEGQAAAQAKAAGQGCTTFVSECSLPTEKGNFRLRAYRYADGVKTHEPVVMVAGNVRGRENVPVRVHDQCQTSEVLGSKRCDCREQLDMSLRYIQEHGGGVVIYLAQEGRGIGLANKVAAYALQDDGLDTVEANRQLGFEDDERSYECVEFILGDMDIKSVQLITNNPFKIGWLRAMGVKVEGRIPIEVPANEHNHGYLEAKASRMSHLINSL 325          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A835ZEW2_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW2_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.260e-100
Identity = 170/288 (59.03%), Postives = 208/288 (72.22%), Query Frame = 3
Query:  249 LYMFGGVIVGPDANKLATVLEHTDGATSGEDTDEEAPHSPARDAEPGFRSGLKRKAPGCLPGPGRTVRKGDATPRAPDGHAAARAKATGQGCTSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLINSL 1112
            L +FGGV+ G +A KL+++   +           E+P++ A D+E         +AP       R  RK     + P   +A  A A G   T+FVS C+LPTDKG F LR+YR+ GP +SHEPVVMVAG+ +G E V VRVHDQCQTSEVLGS+RCDC+EQL  +L+H+QEHGGAVIYLQQEGRGIGLANKVAAYALQD GLDTVDANR LGF DD+RSYECV +IL DMGVKSVRL+TNNP+K+  LRALGV V   VPV+VP++E NERY++SK +RM HLI+ L
Sbjct:   16 LRLFGGVLSGAEAVKLSSLFPKS-----------ESPYTSADDSE------ASSQAP-------RLTRKR----KLPLAQSATAAAACGACATTFVSACSLPTDKGAFTLRAYRHIGPKRSHEPVVMVAGEAKG-EGVFVRVHDQCQTSEVLGSRRCDCKEQLDAALRHIQEHGGAVIYLQQEGRGIGLANKVAAYALQDGGLDTVDANRHLGFADDERSYECVPYILEDMGVKSVRLMTNNPFKVASLRALGVRVLDSVPVVVPTHEDNERYMRSKVERMGHLIDGL 274          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A836CJG3_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG3_9STRA)

HSP 1 Score: 308 bits (790), Expect = 1.320e-100
Identity = 172/288 (59.72%), Postives = 201/288 (69.79%), Query Frame = 3
Query:  249 LYMFGGVIVGPDANKLATVLEHTDGATSGEDTDEEAPHSPARDAEPGFRSGLKRKAPGCLPGPGRTVRKGDATPRAPDGHAAARAKATGQGCTSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLINSL 1112
            ++ FGGV+ G  A +L   L+H+  ATSG      A ++ A            R       G GR  RK  A                    TSFVSECALPT KG+FRLR+YR+ G  K HEPVVMVAG+ +G E VHVRVHDQCQTSEVLGSQRCDCREQL  SL+H+Q HGGAVIYLQQEGRGIGLANKVAAYALQD GLDTVDANR LGFGDD+RSYECV FIL DMGV SV+L+TNNP+K+D LR LGV V G +P+++P+NEHN +Y++SK  RM HLI+SL
Sbjct:   12 VHFFGGVLSGEHAARL---LQHSANATSGSS----AGNTSAEXXXXXXXGAAVRG------GSGRITRKRKAQ-------------------TSFVSECALPTSKGLFRLRAYRHQGR-KRHEPVVMVAGEAKG-EGVHVRVHDQCQTSEVLGSQRCDCREQLDASLKHIQAHGGAVIYLQQEGRGIGLANKVAAYALQDGGLDTVDANRALGFGDDERSYECVPFILEDMGVSSVKLMTNNPFKVDSLRELGVNVLGNIPIVIPTNEHNAKYIQSKVQRMGHLIDSL 265          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A835ZPV4_9STRA (GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPV4_9STRA)

HSP 1 Score: 276 bits (705), Expect = 9.200e-85
Identity = 133/193 (68.91%), Postives = 158/193 (81.87%), Query Frame = 3
Query:  525 TSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLI 1103
            T FVSEC LPT KG FRLR+Y Y GP K  EP+ +V+GD+    DV VRVHDQC TSEVLGS RCDCREQL LSL ++  HGG VIY+QQEGRGIGLANK+AAY+LQDQGLDTVDANR LGF DD RSYE V+FILRD+GVKSV+L+TNNP+KL  L+A+G+ V  R+P+LV  N H+ERYL++K+ RMSHL+
Sbjct:   18 TRFVSECKLPTRKGTFRLRAYSYEGPTKGLEPLAIVSGDIGDGVDVPVRVHDQCVTSEVLGSMRCDCREQLELSLDYIHRHGGIVIYMQQEGRGIGLANKIAAYSLQDQGLDTVDANRHLGFEDDYRSYEAVEFILRDLGVKSVQLMTNNPFKLKCLKAMGIKVQARIPMLVAPNPHSERYLQAKSRRMSHLL 210          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A7S2UW32_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW32_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.110e-82
Identity = 133/198 (67.17%), Postives = 157/198 (79.29%), Query Frame = 3
Query:  519 GCTSFVSECALPTDKGMFRLRSYRYTGP-DKSH-EPVVMVAGDVRG---REDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSH 1097
            G T  V EC+LPT KG+FRLRSYR+ GP +  H EPVV++AGD++     +DV VRVHDQC TSEVLGSQRCDC+EQL L+L H+Q HGGA+IYLQQEGRGIGLANKVAAY LQD GLDTVDANR LGF DDQRSYECV FILRD+G+ S+ L+TNNP K+  L  LGV VT   PVL P N+HN +YL++K ++M H
Sbjct:   66 GQTQVVGECSLPTKKGLFRLRSYRHRGPLEAGHLEPVVVIAGDLQEIYQGKDVAVRVHDQCLTSEVLGSQRCDCKEQLDLALDHIQRHGGALIYLQQEGRGIGLANKVAAYELQDGGLDTVDANRHLGFADDQRSYECVPFILRDLGISSISLMTNNPMKVKSLTRLGVEVTSTTPVLAPPNKHNLQYLRTKVEKMDH 263          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A6H5KNR9_9PHAE (GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNR9_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.660e-81
Identity = 131/196 (66.84%), Postives = 160/196 (81.63%), Query Frame = 3
Query:  525 TSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLINSL 1112
            T +VSEC LPT +G FRLRSYR+ G  +S EPVVMVAGD++  E V VRVHDQC TSEVLGS RCDC+EQL L+L ++ EHGG VIY+QQEGRGIGLANKVAAYALQD GLDTVDANR LGF DD RSYE V+ IL DMG+KS++L+TNNP+KL  L+++G+ V  R+P+LVP N H+  YL++KA RMSH+++ L
Sbjct:  181 TQYVSECLLPTPRGKFRLRSYRHEGHGRSMEPVVMVAGDLQDLEGVPVRVHDQCLTSEVLGSLRCDCKEQLELALDYISEHGGCVIYMQQEGRGIGLANKVAAYALQDGGLDTVDANRHLGFDDDLRSYEAVEHILADMGIKSIKLMTNNPFKLKCLKSMGIKVLSRIPMLVPPNVHSLAYLRAKAHRMSHVLHQL 376          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: L1IM83_GUITC (GTP_cyclohydro2 domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IM83_GUITC)

HSP 1 Score: 254 bits (650), Expect = 1.660e-80
Identity = 124/193 (64.25%), Postives = 154/193 (79.79%), Query Frame = 3
Query:  519 GCTSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSH 1097
            G T F++EC +PTD+GMFRLRSYRY G  K  EPVVMV+GD+RG+E V VRVHDQC TSEVLGS+RCDC+EQL ++L ++ ++ GA+IY+ QEGRGIGLANK+AAY LQD GLDTVDANR LGF DD+RSY+CV  IL DMG+ SV+L+TNNPYK+  L  +GV +    P LV  N +N +YL++KA RMSH
Sbjct:    1 GKTEFIAECHMPTDRGMFRLRSYRYRGA-KIMEPVVMVSGDLRGKEGVVVRVHDQCFTSEVLGSKRCDCKEQLDMALNYINQNSGAIIYMPQEGRGIGLANKIAAYQLQDNGLDTVDANRHLGFEDDERSYDCVPAILEDMGILSVQLVTNNPYKIQQLTDVGVKIDRTKPSLVEPNTYNVKYLRTKAARMSH 192          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A7S0SVJ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVJ9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 8.490e-78
Identity = 118/200 (59.00%), Postives = 154/200 (77.00%), Query Frame = 3
Query:  504 KATGQGCTSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLI 1103
            K T Q  T+F++EC +PT  G FR+RSY Y+ P+   EP+VM++G+++ +E+V VRVHDQC TSEV GSQRCDC EQL  SL+ ++   G VIYLQQEGRGIG+ANKVAAY LQDQGLDT+DAN  LGF D+ R Y CV  IL D+G+KS+RL+TNNP+K++ L  LGV +T R+ V++P  +HN RYL SK DRM+H++
Sbjct:    5 KNTNQYSTNFIAECDMPTRLGHFRMRSYTYSSPNTYLEPIVMISGEIKDKENVIVRVHDQCFTSEVFGSQRCDCSEQLQESLKLIKTEDGIVIYLQQEGRGIGIANKVAAYNLQDQGLDTIDANIHLGFKDEMREYYCVPEILNDLGIKSIRLITNNPFKINQLTNLGVNITDRISVVIPPTKHNFRYLSSKRDRMNHML 204          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A3M6VSR5_9STRA (GTP_cyclohydro2 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSR5_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.280e-75
Identity = 118/195 (60.51%), Postives = 152/195 (77.95%), Query Frame = 3
Query:  525 TSFVSECALPTDKGMFRLRSYRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLINS 1109
            T+FV+E ALPTD G+FR+R+YR  G  +  EP+ M+ GDVRG+ +V VRVHDQC TSEV GS +CDC+EQL  +   +Q+HGG +IY+ QEGRGIGLANK+ AY++Q++GLDTVDANR LGF DD RSYE V  IL+D+G+KSVRLLTNNP K+  L  LG+TV GR PV++   E ++ YL +KA+RMSHL+ S
Sbjct:   38 TTFVAETALPTDGGVFRVRAYRSVGSLRESEPIAMITGDVRGKHNVFVRVHDQCFTSEVFGSLKCDCKEQLDYAKVCIQQHGGVIIYMPQEGRGIGLANKIMAYSMQERGLDTVDANRVLGFKDDYRSYEPVPTILKDLGIKSVRLLTNNPRKIRLLSQLGITVEGRQPVVIKGGEFSQGYLTAKANRMSHLLPS 232          
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Match: A0A7S0U028_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U028_HEMAN)

HSP 1 Score: 246 bits (627), Expect = 1.160e-74
Identity = 122/211 (57.82%), Postives = 154/211 (72.99%), Query Frame = 3
Query:  510 TGQGCTSFVSECALPTDKGMFRLRSYRYTGPD------------KSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQLALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRLGFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPVLVPSNEHNERYLKSKADRMSHLIN 1106
            T +  T FV+EC LPTD+G+FRL SYRY G                 EPVV+V GD +G+    VRVHDQC TSEVLGS+RCDC+EQL ++LQH+ E+ GA+IY+ QEGRGIGLANK+AAY LQD G+DTVDANR LGF DD+RSY CV FIL  MGV+SVRL+TNNP+K++ L  LGV +    P  V  N +NE+YL++K +RM+HL++
Sbjct:  124 TAEARTEFVAECKLPTDRGLFRLLSYRYRGAKLVVRNGERVLEWSEMEPVVVVNGDPKGKSGFVVRVHDQCFTSEVLGSKRCDCKEQLDMALQHIIENEGALIYMPQEGRGIGLANKIAAYELQDDGMDTVDANRHLGFDDDERSYRCVPFILDHMGVESVRLITNNPFKIEELSGLGVRIDSVQPSFVEPNAYNEKYLRTKVERMAHLLS 334          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMW3_9PHAE3.070e-11965.75GTP_cyclohydro2 domain-containing protein n=2 Tax=... [more]
A0A835ZEW2_9STRA1.260e-10059.03GTP cyclohydrolase II-domain-containing protein n=... [more]
A0A836CJG3_9STRA1.320e-10059.72GTP cyclohydrolase II-domain-containing protein n=... [more]
A0A835ZPV4_9STRA9.200e-8568.91GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UW32_9STRA2.110e-8267.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KNR9_9PHAE1.660e-8166.84GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=287... [more]
L1IM83_GUITC1.660e-8064.25GTP_cyclohydro2 domain-containing protein (Fragmen... [more]
A0A7S0SVJ9_9STRA8.490e-7859.00Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A3M6VSR5_9STRA4.280e-7560.51GTP_cyclohydro2 domain-containing protein n=1 Tax=... [more]
A0A7S0U028_HEMAN1.160e-7457.82Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:81068..83989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.5
Seed ortholog evalue6.6e-99
Seed eggNOG ortholog2880.D8LTI2
Preferred nameRIB1
KEGG rclassRC00293,RC02504
KEGG koko:K01497
KEGG ReactionR00425
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko02024,map00740,map00790,map01100,map01110,map02024
KEGG ModuleM00125
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
EC3.5.4.25
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s9_g15352_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGTP cyclohydrolase II, RibA
Ec32 orthologEc-02_005710.1
Exons2
Model size1214
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1964.1prot_S-ischiensis_contig11.1964.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 81167..83855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.7543297-UTR-S-ischiensis_contig11:81067..811661622815585.7543297-UTR-S-ischiensis_contig11:81067..81166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 81068..81166 -
1695739785.6437936-UTR-S-ischiensis_contig11:81067..811661695739785.6437936-UTR-S-ischiensis_contig11:81067..81166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 81068..81166 -
1622815585.8004751-UTR-S-ischiensis_contig11:83855..839891622815585.8004751-UTR-S-ischiensis_contig11:83855..83989Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 83856..83989 -
1695739785.670511-UTR-S-ischiensis_contig11:83855..839891695739785.670511-UTR-S-ischiensis_contig11:83855..83989Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 83856..83989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.768453-CDS-S-ischiensis_contig11:81166..813311622815585.768453-CDS-S-ischiensis_contig11:81166..81331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 81167..81331 -
1695739785.6547894-CDS-S-ischiensis_contig11:81166..813311695739785.6547894-CDS-S-ischiensis_contig11:81166..81331Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 81167..81331 -
1622815585.783165-CDS-S-ischiensis_contig11:83039..838551622815585.783165-CDS-S-ischiensis_contig11:83039..83855Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 83040..83855 -
1695739785.662634-CDS-S-ischiensis_contig11:83039..838551695739785.662634-CDS-S-ischiensis_contig11:83039..83855Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 83040..83855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1964.1

>prot_S-ischiensis_contig11.1964.1 ID=prot_S-ischiensis_contig11.1964.1|Name=mRNA_S-ischiensis_contig11.1964.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=327bp
MCHATTDESMGHACIADSEGSPAGERAEAKQPAGTRRALYMFGGVIVGPD
ANKLATVLEHTDGATSGEDTDEEAPHSPARDAEPGFRSGLKRKAPGCLPG
PGRTVRKGDATPRAPDGHAAARAKATGQGCTSFVSECALPTDKGMFRLRS
YRYTGPDKSHEPVVMVAGDVRGREDVHVRVHDQCQTSEVLGSQRCDCREQ
LALSLQHVQEHGGAVIYLQQEGRGIGLANKVAAYALQDQGLDTVDANRRL
GFGDDQRSYECVDFILRDMGVKSVRLLTNNPYKLDWLRALGVTVTGRVPV
LVPSNEHNERYLKSKADRMSHLINSL*
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mRNA from alignment at S-ischiensis_contig11:81068..83989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1964.1 ID=mRNA_S-ischiensis_contig11.1964.1|Name=mRNA_S-ischiensis_contig11.1964.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2922bp|location=Sequence derived from alignment at S-ischiensis_contig11:81068..83989- (Schizocladia ischiensis KU_0333)
CACAAGGCGACGGACGTCGGTGGGCAAAAGGCGAGACACGTCTGATCAGC GCCACCTTCTCGCCCACTGACCGCGGAGCCGCACTGATCATAACGATCTT GACAGCGTGGGCCGAGGCCGGGGGAATAAAACAAATGTGCCACGCAACGA CGGACGAGAGCATGGGGCACGCATGCATCGCGGACTCTGAGGGGAGCCCT GCGGGGGAGCGCGCGGAGGCGAAACAGCCCGCGGGTACGCGAAGAGCGCT TTACATGTTTGGGGGAGTGATCGTGGGGCCGGACGCCAACAAGTTGGCGA CGGTCCTCGAGCACACGGACGGGGCGACCTCAGGGGAGGACACGGACGAG GAGGCACCCCACTCCCCGGCACGCGATGCCGAGCCGGGATTCCGGTCTGG CCTCAAGCGCAAGGCTCCCGGGTGCTTGCCGGGGCCCGGGCGCACAGTCC GAAAGGGTGACGCAACGCCCCGTGCGCCAGACGGCCACGCGGCGGCGCGG GCCAAGGCCACGGGACAGGGCTGCACGAGCTTCGTGTCCGAGTGCGCGCT GCCGACGGACAAGGGCATGTTCCGGCTGCGCTCTTACCGTTACACGGGCC CCGACAAGTCTCACGAGCCGGTGGTAATGGTGGCGGGCGACGTGCGCGGG CGGGAGGACGTCCACGTCCGCGTCCACGACCAGTGCCAGACCAGTGAGGT GCTGGGCTCCCAGCGGTGCGACTGCCGCGAGCAGCTGGCGCTTTCCCTGC AGCACGTGCAGGAGCACGGCGGCGCCGTGATCTACCTGCAGCAGGAGGGG CGCGGCATCGGGCTGGCCAACAAGGTGGCGGCGTATGCTCTGCAGGACCA AGGGCTGGACACGGTGGATGCGAACCGCCGCCTGGGGTTCGGCGACGACC AGCGCTCGTATGAGTGCGTTGACTTCATCCTTCGGGACATGGGCGTCAAG GTGAGGAGTGGACACAATCGGATTGGGTGTCGATAATGTTGGCGAAGATC AAAGGGTGGATGGCGCGAAACCTGGCTTTGTCGATCCATGATTTTGTACT TCCCGTTATCGATGTTTTGAGGACGACTTGAAATTTTGAGGAGTTTTTTG GTTCAGGCTTGCGACATCTTCGGTCGGTCGTGTACCCTTTCAAGTGTTTC GCATTGGCCATCTTCTTGGTGCAAGCTGCAACCATTACTGGTCCAGATGT AGCCGGTACGTGTATCTACGATACAGTAGTATCGAGTCGAGTATCTTTAA TCGGTGTGACGTGGCCCAGTGGCCGTTGGCCATGCGCCACGTTTAGAAAA GGGCACATGGAGCCGCTCGCAGCTGCGATCCCCATCGGCGTGCGAAGGGG GAAGAGTTGAATTCAGTGGTCCCCTGGCGTGAGAGCGGAGAAGATACCCT CACTGTTTTGCTCCCACGGATATTTTTTACCGGAGTTTGGCGGTTCAAAC TTCACTGGTCACACGCCATTGTGCGGCATGAGCACGCAATACAAGTGGAG GCGTTGTGTTGACGAATGTGGGCGCGACAGGCACTACAGTAGATGACCGT CCTAGTTCAAGAGTATTTACCATTATGTTTATGTACTCATGTGGTGCTTG CCGTAGTCCCGAGACCATTGACCCCGCGCCTCGTGCGAGACGGAGCAGGA CCTACTCGCTCCAACCGGGCACTCCACACCGACACAAGAAAAGCTGTCAC AGCACGCTCTATCCGACTCTGCCCCTCCTCTGGCCAACCATTACAGGAGT GTGGGAACTATGTGCTTTATAGATTGCACAAGTGTGTATGAACGTTTGTA TGTGTGTGTGCTTGCGCTGGCGTGTGCGTGTGTGTGTATCCCACTGTGAC AAACGTTCAGCGGAGAGATCTTTCAGGCATGTCGCACGTGCGCGGCGGCA TGCCAATCTTGCACTCTTCATCTGCCGAGCATCAAGTTTCTTGTTGTGCA ATGGTTCATGCGCTCGCACGGCGTACAGAAATGTGCAGTATGCGGCAGCC GCTGATGTTGCTGCTAGTGGTGGCGGAACGTTTTGCATTTCGCTCTTGTA CGGGTATCAAGATTTGACCATCAGGGTCTCGGCTCGTGCGATCCAATTGT TAAGATTTCTCCTGCTGTAGGTCCGTGTACGCCCGTTTTGCTTGCTACTT AGTCCAATTGTTATATTTTATGATTGTAGGTCCGCGTACCCCCGTTTTGG TTGCTACTTCGTCCGGGGACCATTGACTGCGCGGTGCGGGCTAGGAGCGG TGCGGGTTAGGACCGCGCGGTACAGGGCGGCTGAGCATGTGCGTACCGCA AGCAGTTGAAGTTTGTTGAAGTTTTTTTTCCGTGGGGAGAACGGCCAGCT GCACGCGGCACGTGCAGTACTTAGTACTTGTTGACGTTCTTCGTTATTCG CTCCGCCAGTCGTAGGATTCACCAAGCGAGCCCAATGAATGCTGCTCCGC ACTCGGGAGGGCCGCGGGGGGTCTATGGTCTCTGGGGTAAGTTACAGCAA GCACGGTGTCAGTGCATGCTTAGCACTAGTGCGAGCACAGTAAGTACATT GGGTACGTACCTGAAAGTATGTGTGTACCTCACGGCCTCCTTTCCCCTCC CCTCCCCTCCCTCTCCCTCCCCTCCCCCCCCCGGGGGTTGCCTCTACTAC GACCGCAGAGCGTCCGTCTCCTGACCAACAACCCCTACAAGCTGGACTGG CTGCGCGCGCTCGGCGTGACCGTTACGGGGCGCGTGCCGGTCCTGGTGCC CTCCAACGAGCACAACGAGAGGTACCTCAAGTCCAAGGCGGACCGGATGA GCCACCTCATCAACAGCCTGTGAGCCCCTCTCCAGCTCTCCTTTCCCTCC CTCCTTTTGGCCCCATCCTGCTGGCCGGCAGCATGCCCGTCCCCTCGCGT GCCATCTTGGCCGACGGGCGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:81068..83989-

>mRNA_S-ischiensis_contig11.1964.1 ID=mRNA_S-ischiensis_contig11.1964.1|Name=mRNA_S-ischiensis_contig11.1964.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1962bp|location=Sequence derived from alignment at S-ischiensis_contig11:81068..83989- (Schizocladia ischiensis KU_0333)
ATGTGCCACGCAACGACGGACGAGAGCATGGGGCACGCATGCATCGCGGA
CTCTGAGGGGAGCCCTGCGGGGGAGCGCGCGGAGGCGAAACAGCCCGCGG
GTACGCGAAGAGCGCTTTACATGTTTGGGGGAGTGATCGTGGGGCCGGAC
GCCAACAAGTTGGCGACGGTCCTCGAGCACACGGACGGGGCGACCTCAGG
GGAGGACACGGACGAGGAGGCACCCCACTCCCCGGCACGCGATGCCGAGC
CGGGATTCCGGTCTGGCCTCAAGCGCAAGGCTCCCGGGTGCTTGCCGGGG
CCCGGGCGCACAGTCCGAAAGGGTGACGCAACGCCCCGTGCGCCAGACGG
CCACGCGGCGGCGCGGGCCAAGGCCACGGGACAGGGCTGCACGAGCTTCG
TGTCCGAGTGCGCGCTGCCGACGGACAAGGGCATGTTCCGGCTGCGCTCT
TACCGTTACACGGGCCCCGACAAGTCTCACGAGCCGGTGGTAATGGTGGC
GGGCGACGTGCGCGGGCGGGAGGACGTCCACGTCCGCGTCCACGACCAGT
GCCAGACCAGTGAGGTGCTGGGCTCCCAGCGGTGCGACTGCCGCGAGCAG
CTGGCGCTTTCCCTGCAGCACGTGCAGGAGCACGGCGGCGCCGTGATCTA
CCTGCAGCAGGAGGGGCGCGGCATCGGGCTGGCCAACAAGGTGGCGGCGT
ATGCTCTGCAGGACCAAGGGCTGGACACGGTGGATGCGAACCGCCGCCTG
GGGTTCGGCGACGACCAGCGCTCGTATGAGTGCGTTGACTTCATCCTTCG
GGACATGGGCGTCAAGATGTGCCACGCAACGACGGACGAGAGCATGGGGC
ACGCATGCATCGCGGACTCTGAGGGGAGCCCTGCGGGGGAGCGCGCGGAG
GCGAAACAGCCCGCGGGTACGCGAAGAGCGCTTTACATGTTTGGGGGAGT
GATCGTGGGGCCGGACGCCAACAAGTTGGCGACGGTCCTCGAGCACACGG
ACGGGGCGACCTCAGGGGAGGACACGGACGAGGAGGCACCCCACTCCCCG
GCACGCGATGCCGAGCCGGGATTCCGGTCTGGCCTCAAGCGCAAGGCTCC
CGGGTGCTTGCCGGGGCCCGGGCGCACAGTCCGAAAGGGTGACGCAACGC
CCCGTGCGCCAGACGGCCACGCGGCGGCGCGGGCCAAGGCCACGGGACAG
GGCTGCACGAGCTTCGTGTCCGAGTGCGCGCTGCCGACGGACAAGGGCAT
GTTCCGGCTGCGCTCTTACCGTTACACGGGCCCCGACAAGTCTCACGAGC
CGGTGGTAATGGTGGCGGGCGACGTGCGCGGGCGGGAGGACGTCCACGTC
CGCGTCCACGACCAGTGCCAGACCAGTGAGGTGCTGGGCTCCCAGCGGTG
CGACTGCCGCGAGCAGCTGGCGCTTTCCCTGCAGCACGTGCAGGAGCACG
GCGGCGCCGTGATCTACCTGCAGCAGGAGGGGCGCGGCATCGGGCTGGCC
AACAAGGTGGCGGCGTATGCTCTGCAGGACCAAGGGCTGGACACGGTGGA
TGCGAACCGCCGCCTGGGGTTCGGCGACGACCAGCGCTCGTATGAGTGCG
TTGACTTCATCCTTCGGGACATGGGCGTCAAGAGCGTCCGTCTCCTGACC
AACAACCCCTACAAGCTGGACTGGCTGCGCGCGCTCGGCGTGACCGTTAC
GGGGCGCGTGCCGGTCCTGGTGCCCTCCAACGAGCACAACGAGAGGTACC
TCAAGTCCAAGGCGGACCGGATGAGCCACCTCATCAACAGCCTGTGAAGC
GTCCGTCTCCTGACCAACAACCCCTACAAGCTGGACTGGCTGCGCGCGCT
CGGCGTGACCGTTACGGGGCGCGTGCCGGTCCTGGTGCCCTCCAACGAGC
ACAACGAGAGGTACCTCAAGTCCAAGGCGGACCGGATGAGCCACCTCATC
AACAGCCTGTGA
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