mRNA_S-ischiensis_contig106.1887.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1887.1
Unique NamemRNA_S-ischiensis_contig106.1887.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:239542..240191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_008920.1
Exons2
Model size470
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1887.1prot_S-ischiensis_contig106.1887.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 239581..240180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.4995854-UTR-S-ischiensis_contig106:239541..2395801622815566.4995854-UTR-S-ischiensis_contig106:239541..239580Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 239542..239580 -
1695739774.2555811-UTR-S-ischiensis_contig106:239541..2395801695739774.2555811-UTR-S-ischiensis_contig106:239541..239580Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 239542..239580 -
1622815566.5418432-UTR-S-ischiensis_contig106:240180..2401911622815566.5418432-UTR-S-ischiensis_contig106:240180..240191Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 240181..240191 -
1695739774.287813-UTR-S-ischiensis_contig106:240180..2401911695739774.287813-UTR-S-ischiensis_contig106:240180..240191Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 240181..240191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.516054-CDS-S-ischiensis_contig106:239580..2398851622815566.516054-CDS-S-ischiensis_contig106:239580..239885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 239581..239885 -
1695739774.2657847-CDS-S-ischiensis_contig106:239580..2398851695739774.2657847-CDS-S-ischiensis_contig106:239580..239885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 239581..239885 -
1622815566.528931-CDS-S-ischiensis_contig106:240065..2401801622815566.528931-CDS-S-ischiensis_contig106:240065..240180Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 240066..240180 -
1695739774.279496-CDS-S-ischiensis_contig106:240065..2401801695739774.279496-CDS-S-ischiensis_contig106:240065..240180Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 240066..240180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1887.1

>prot_S-ischiensis_contig106.1887.1 ID=prot_S-ischiensis_contig106.1887.1|Name=mRNA_S-ischiensis_contig106.1887.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
MLPVFRALVAALALLAAPVLGLRPVIPARSVAGRSASLGSASPWGLTMAS
KPDTDVTKFGLAALAASAPLASPGAAWATVAGPAATAVAAATPLALADAA
SGPEGPPWLVAVPIVLGVVLATSVAGVIFGLSQPREQDD*
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mRNA from alignment at S-ischiensis_contig106:239542..240191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1887.1 ID=mRNA_S-ischiensis_contig106.1887.1|Name=mRNA_S-ischiensis_contig106.1887.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=650bp|location=Sequence derived from alignment at S-ischiensis_contig106:239542..240191- (Schizocladia ischiensis KU_0333)
CGCGGCTCATCATGTTGCCTGTTTTCCGGGCCCTGGTGGCCGCGCTGGCG
CTGCTGGCGGCTCCTGTGCTCGGTCTACGTCCTGTAATTCCCGCCCGCTC
GGTGGCTGGACGCTCCGCTTCGCTCGGTGGGTGCACTATGTCATGTTGTT
GAGCGTCAATTGCTCGGTATGTGCACGCGGTTGCTGTCCAAGTGCCCTGC
TCAAATTGGACTTGCCCAAGCTTTCGGAGCCCTGGCCTAGATATTGCATT
CGAGATGACGAATGGCTAAAGTGTCCCCACCCCCATCTTGGTGTTTCGTT
CAGCAGGGTCTGCCTCCCCCTGGGGCCTCACCATGGCGAGCAAGCCAGAC
ACGGACGTGACAAAGTTTGGTTTGGCAGCCTTGGCAGCTTCTGCGCCTCT
GGCTTCGCCAGGAGCAGCATGGGCGACTGTGGCTGGTCCTGCAGCGACAG
CAGTTGCTGCCGCGACTCCGCTGGCGCTGGCTGATGCAGCTTCTGGGCCA
GAGGGGCCCCCGTGGTTAGTGGCAGTCCCCATCGTCCTGGGCGTGGTCTT
GGCGACCAGTGTTGCCGGAGTGATTTTCGGCCTTTCTCAGCCGCGAGAGC
AGGACGACTGAGCAGTTCAGACAAGACCATAATACAGCAAATTAACTTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:239542..240191-

>mRNA_S-ischiensis_contig106.1887.1 ID=mRNA_S-ischiensis_contig106.1887.1|Name=mRNA_S-ischiensis_contig106.1887.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig106:239542..240191- (Schizocladia ischiensis KU_0333)
ATGTTGCCTGTTTTCCGGGCCCTGGTGGCCGCGCTGGCGCTGCTGGCGGC
TCCTGTGCTCGGTCTACGTCCTGTAATTCCCGCCCGCTCGGTGGCTGGAC
GCTCCGCTTCGCTCGATGTTGCCTGTTTTCCGGGCCCTGGTGGCCGCGCT
GGCGCTGCTGGCGGCTCCTGTGCTCGGTCTACGTCCTGTAATTCCCGCCC
GCTCGGTGGCTGGACGCTCCGCTTCGCTCGGGTCTGCCTCCCCCTGGGGC
CTCACCATGGCGAGCAAGCCAGACACGGACGTGACAAAGTTTGGTTTGGC
AGCCTTGGCAGCTTCTGCGCCTCTGGCTTCGCCAGGAGCAGCATGGGCGA
CTGTGGCTGGTCCTGCAGCGACAGCAGTTGCTGCCGCGACTCCGCTGGCG
CTGGCTGATGCAGCTTCTGGGCCAGAGGGGCCCCCGTGGTTAGTGGCAGT
CCCCATCGTCCTGGGCGTGGTCTTGGCGACCAGTGTTGCCGGAGTGATTT
TCGGCCTTTCTCAGCCGCGAGAGCAGGACGACTGAGGTCTGCCTCCCCCT
GGGGCCTCACCATGGCGAGCAAGCCAGACACGGACGTGACAAAGTTTGGT
TTGGCAGCCTTGGCAGCTTCTGCGCCTCTGGCTTCGCCAGGAGCAGCATG
GGCGACTGTGGCTGGTCCTGCAGCGACAGCAGTTGCTGCCGCGACTCCGC
TGGCGCTGGCTGATGCAGCTTCTGGGCCAGAGGGGCCCCCGTGGTTAGTG
GCAGTCCCCATCGTCCTGGGCGTGGTCTTGGCGACCAGTGTTGCCGGAGT
GATTTTCGGCCTTTCTCAGCCGCGAGAGCAGGACGACTGA
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