mRNA_S-ischiensis_contig102.1763.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1763.1
Unique NamemRNA_S-ischiensis_contig102.1763.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:253120..255600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1857
Cds size1323
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1763.1prot_S-ischiensis_contig102.1763.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 253527..254849 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.5497081-UTR-S-ischiensis_contig102:253119..2535261622815552.5497081-UTR-S-ischiensis_contig102:253119..253526Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 253120..253526 -
1695739765.2082324-UTR-S-ischiensis_contig102:253119..2535261695739765.2082324-UTR-S-ischiensis_contig102:253119..253526Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 253120..253526 -
1622815552.5765617-UTR-S-ischiensis_contig102:254849..2549031622815552.5765617-UTR-S-ischiensis_contig102:254849..254903Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 254850..254903 -
1695739765.2333403-UTR-S-ischiensis_contig102:254849..2549031695739765.2333403-UTR-S-ischiensis_contig102:254849..254903Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 254850..254903 -
1622815552.5898187-UTR-S-ischiensis_contig102:255527..2556001622815552.5898187-UTR-S-ischiensis_contig102:255527..255600Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 255528..255600 -
1695739765.2432945-UTR-S-ischiensis_contig102:255527..2556001695739765.2432945-UTR-S-ischiensis_contig102:255527..255600Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 255528..255600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.5632699-CDS-S-ischiensis_contig102:253526..2548491622815552.5632699-CDS-S-ischiensis_contig102:253526..254849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 253527..254849 -
1695739765.2226706-CDS-S-ischiensis_contig102:253526..2548491695739765.2226706-CDS-S-ischiensis_contig102:253526..254849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 253527..254849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1763.1

>prot_S-ischiensis_contig102.1763.1 ID=prot_S-ischiensis_contig102.1763.1|Name=mRNA_S-ischiensis_contig102.1763.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=441bp
MGLDSGKVTNMRSRNRALDQYSVEDTLQPKVQWLEKALGLERKEVAKMVL
KRPQVLGYSITDNMEPKVQWLEERLDLECKEVAKMVFKDPQLFGYSIEDN
LEPKVQWLEEQLGLEGKEVAKMVFKDPQLFGYSIRDNLEPKVQWLEERLG
LERKEVVNMACGFPPVLGLSITDNLEPKLQWLEKRLGMEGKEVAKMVFKD
ERILSCSIEDNLEPKLQWLEERLGLERKEVAKMVHMRPQLFHYSIKDNLE
PKLQWLEERLGLECKEVARMVFKDPTLFSFSIEDNLEPKVRWMREELPLD
GEAVSRMLLARPELLRPSLERTLRPKMPWLRDALGASPEQCANIVHKYPE
LLGCSIDNNLKPTLDFFMEELGGGRDAPQTRAIILGGMGVLKASLSKRLR
PRAEAMRAAGLVPDFAAHGRIMAGYTDKKFEGWLRRPHAQ*
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mRNA from alignment at S-ischiensis_contig102:253120..255600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1763.1 ID=mRNA_S-ischiensis_contig102.1763.1|Name=mRNA_S-ischiensis_contig102.1763.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2481bp|location=Sequence derived from alignment at S-ischiensis_contig102:253120..255600- (Schizocladia ischiensis KU_0333)
GCCAGCAGGTGGGGAGAGCGGAGAGGACACGGGAGACGAGGGTGGCAAAG
GCTTGCAGGGGCTTTCACCACAGGTGAGAACCCGGCAGGGTCGTGCTGCA
TACTGTGTTTTGTGGCTCAGTGCATTCACTTGCCAGTGGGTTTGACCACA
TGCGTAGGGGAGACAGAAACGGTGTTGGTCAGGTCGCCTATCTGTGACAC
TTGTGTAAGGGTTCTCGTGGCGTGAAGCAATTTTTCATTCCATTTTTCCA
TTCTACACTGCTGTATTTGCCAGGTGCTGCACTGCAGGCGGGGGGTGCAC
ATCTGATTGGTACACACAATGCCTCGATTTGGGACAGTCTGGCTTGAGCT
CTCACACGGTGCTTCGAAGTACATCACTGCACTCACCCACAGTCAGACAC
TGGCCCTCAGATGTTCCCGGCAGCCCAGGCCATCGAAGGAACGGTGGGGT
GAGCCCTTGCCCCCATTTGGCGTAACTGATCTCCCGCAGTGGCCGGGGAC
AGGCCGTTCGTGCCTGGTGCCACCCCCCCCGTGCGATTGGGCACCGATTA
CTTCTATGCACTTCACAGCATGTTATATGACGCTATATCAAGGTAACGTA
CCTTAGAGTGTATGCAACATCACGCACATGAGTGCAAGAGTGCAAAAATG
CTTGTGGCCCACAAAAACCCATGGCTGCACCACCCCCGTCTCCGCAGGCG
CCGGGCCCGGAGAGCAATGTGGAGCGTGTGGGCTGCTGGTTGCACGAGGA
GATGGGCCTGGATTCCGGGAAGGTGACCAACATGCGCTCCCGGAATCGAG
CGCTCGATCAATATAGCGTTGAGGACACCCTGCAGCCCAAGGTGCAGTGG
CTGGAGAAGGCGCTGGGACTGGAGCGCAAGGAAGTGGCCAAGATGGTTTT
AAAACGCCCGCAGGTTCTTGGCTACAGCATCACGGACAATATGGAGCCAA
AGGTGCAGTGGCTGGAGGAGCGGCTGGATCTGGAGTGCAAGGAAGTGGCC
AAGATGGTTTTCAAAGACCCGCAGCTTTTCGGCTACAGCATCGAAGACAA
TCTGGAGCCCAAGGTGCAGTGGCTGGAGGAGCAGCTGGGCTTGGAGGGCA
AGGAAGTGGCCAAGATGGTTTTTAAAGACCCGCAGCTTTTCGGCTACAGC
ATCAGGGACAACCTGGAGCCCAAGGTGCAGTGGCTGGAGGAGCGGCTGGG
GCTGGAGCGCAAGGAAGTTGTCAACATGGCTTGCGGCTTCCCGCCAGTTC
TCGGCCTCAGCATCACGGACAACCTGGAGCCCAAGCTGCAATGGCTGGAG
AAGCGGCTGGGGATGGAGGGCAAGGAAGTGGCCAAGATGGTTTTCAAAGA
CGAGAGGATTCTCAGCTGCAGCATCGAGGACAACCTGGAGCCCAAGCTGC
AGTGGCTAGAGGAGCGGCTGGGGCTGGAGCGCAAGGAAGTCGCCAAGATG
GTGCACATGCGCCCGCAGCTTTTCCACTACAGCATCAAGGACAACCTGGA
GCCCAAGCTGCAGTGGCTGGAGGAGCGGCTGGGGCTGGAGTGCAAGGAAG
TGGCCAGGATGGTTTTCAAAGACCCGACGCTTTTCAGCTTCAGCATCGAG
GACAACCTGGAGCCCAAGGTACGGTGGATGCGGGAGGAGTTGCCGCTGGA
TGGGGAGGCGGTGTCCCGAATGCTGCTCGCCCGCCCGGAGCTGCTCCGCC
CAAGCCTTGAGCGGACACTCCGGCCAAAGATGCCGTGGCTGCGCGACGCG
CTCGGGGCGAGCCCGGAGCAGTGTGCGAACATTGTGCACAAATACCCCGA
ACTCCTCGGGTGCAGCATCGACAACAACCTCAAACCCACGCTGGACTTCT
TCATGGAGGAGCTGGGGGGGGGGCGGGACGCGCCCCAGACGCGTGCCATC
ATCTTGGGAGGTATGGGGGTCCTCAAGGCGTCGCTTAGCAAGCGGCTACG
GCCCCGCGCCGAGGCCATGCGGGCCGCAGGGCTCGTCCCGGACTTTGCCG
CCCACGGGCGCATCATGGCGGGCTATACGGACAAGAAGTTTGAGGGGTGG
CTTAGGCGTCCCCACGCGCAATAGTTAGACACGGCGTAGGTGCTTCGAAG
TATTTTAGGGTCCCTAATCTACAGTGGGGGACATATGCCAAGGGCAAGTG
CTGCATTGTTCCACCCAAACACCCCGGTGCGTGGCAGACTCATATATATA
TACTTAAGAGTATATGTTATACTTCGAAGCATATCAAGTATGTACACAGA
ATGAGAAGGAAGGGCGCCGTGTCCCGATGGGCGCAGGCAACCGCTCCGCC
GACACTTGTACAGTGTTGCACAGCATACACACAAACGCCTGCCAGTACAC
CCAAAACCGGCGCCAACGCCTCGGCGCTCTCCTGCAGCGGCGAAACGTTA
GCCCTGAGAGGAAAGGACACTGTACTGTACTTGCAGCGGTGCTTCGACAG
TAGTAGTAGTGCACTCATCAAGCCCGCCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:253120..255600-

>mRNA_S-ischiensis_contig102.1763.1 ID=mRNA_S-ischiensis_contig102.1763.1|Name=mRNA_S-ischiensis_contig102.1763.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2646bp|location=Sequence derived from alignment at S-ischiensis_contig102:253120..255600- (Schizocladia ischiensis KU_0333)
ATGGGCCTGGATTCCGGGAAGGTGACCAACATGCGCTCCCGGAATCGAGC
GCTCGATCAATATAGCGTTGAGGACACCCTGCAGCCCAAGGTGCAGTGGC
TGGAGAAGGCGCTGGGACTGGAGCGCAAGGAAGTGGCCAAGATGGTTTTA
AAACGCCCGCAGGTTCTTGGCTACAGCATCACGGACAATATGGAGCCAAA
GGTGCAGTGGCTGGAGGAGCGGCTGGATCTGGAGTGCAAGGAAGTGGCCA
AGATGGTTTTCAAAGACCCGCAGCTTTTCGGCTACAGCATCGAAGACAAT
CTGGAGCCCAAGGTGCAGTGGCTGGAGGAGCAGCTGGGCTTGGAGGGCAA
GGAAGTGGCCAAGATGGTTTTTAAAGACCCGCAGCTTTTCGGCTACAGCA
TCAGGGACAACCTGGAGCCCAAGGTGCAGTGGCTGGAGGAGCGGCTGGGG
CTGGAGCGCAAGGAAGTTGTCAACATGGCTTGCGGCTTCCCGCCAGTTCT
CGGCCTCAGCATCACGGACAACCTGGAGCCCAAGCTGCAATGGCTGGAGA
AGCGGCTGGGGATGGAGGGCAAGGAAGTGGCCAAGATGGTTTTCAAAGAC
GAGAGGATTCTCAGCTGCAGCATCGAGGACAACCTGGAGCCCAAGCTGCA
GTGGCTAGAGGAGCGGCTGGGGCTGGAGCGCAAGGAAGTCGCCAAGATGG
TGCACATGCGCCCGCAGCTTTTCCACTACAGCATCAAGGACAACCTGGAG
CCCAAGCTGCAGTGGCTGGAGGAGCGGCTGGGGCTGGAGTGCAAGGAAGT
GGCCAGGATGGTTTTCAAAGACCCGACGCTTTTCAGCTTCAGCATCGAGG
ACAACCTGGAGCCCAAGGTACGGTGGATGCGGGAGGAGTTGCCGCTGGAT
GGGGAGGCGGTGTCCCGAATGCTGCTCGCCCGCCCGGAGCTGCTCCGCCC
AAGCCTTGAGCGGACACTCCGGCCAAAGATGCCGTGGCTGCGCGACGCGC
TCGGGGCGAGCCCGGAGCAGTGTGCGAACATTGTGCACAAATACCCCGAA
CTCCTCGGGTGCAGCATCGACAACAACCTCAAACCCACGCTGGACTTCTT
CATGGAGGAGCTGGGGGGGGGGCGGGACGCGCCCCAGACGCGTGCCATCA
TCTTGGGAGGTATGGGGGTCCTCAAGGCGTCGCTTAGCAAGCGGCTACGG
CCCCGCGCCGAGGCCATGCGGGCCGCAGGGCTCGTCCCGGACTTTGCCGC
CCACGGGCGCATCATGGCGGGCTATACGGACAAGAAGTTTGAGGGGTGGC
TTAGGCGTCCCCACGCGCAATAGATGGGCCTGGATTCCGGGAAGGTGACC
AACATGCGCTCCCGGAATCGAGCGCTCGATCAATATAGCGTTGAGGACAC
CCTGCAGCCCAAGGTGCAGTGGCTGGAGAAGGCGCTGGGACTGGAGCGCA
AGGAAGTGGCCAAGATGGTTTTAAAACGCCCGCAGGTTCTTGGCTACAGC
ATCACGGACAATATGGAGCCAAAGGTGCAGTGGCTGGAGGAGCGGCTGGA
TCTGGAGTGCAAGGAAGTGGCCAAGATGGTTTTCAAAGACCCGCAGCTTT
TCGGCTACAGCATCGAAGACAATCTGGAGCCCAAGGTGCAGTGGCTGGAG
GAGCAGCTGGGCTTGGAGGGCAAGGAAGTGGCCAAGATGGTTTTTAAAGA
CCCGCAGCTTTTCGGCTACAGCATCAGGGACAACCTGGAGCCCAAGGTGC
AGTGGCTGGAGGAGCGGCTGGGGCTGGAGCGCAAGGAAGTTGTCAACATG
GCTTGCGGCTTCCCGCCAGTTCTCGGCCTCAGCATCACGGACAACCTGGA
GCCCAAGCTGCAATGGCTGGAGAAGCGGCTGGGGATGGAGGGCAAGGAAG
TGGCCAAGATGGTTTTCAAAGACGAGAGGATTCTCAGCTGCAGCATCGAG
GACAACCTGGAGCCCAAGCTGCAGTGGCTAGAGGAGCGGCTGGGGCTGGA
GCGCAAGGAAGTCGCCAAGATGGTGCACATGCGCCCGCAGCTTTTCCACT
ACAGCATCAAGGACAACCTGGAGCCCAAGCTGCAGTGGCTGGAGGAGCGG
CTGGGGCTGGAGTGCAAGGAAGTGGCCAGGATGGTTTTCAAAGACCCGAC
GCTTTTCAGCTTCAGCATCGAGGACAACCTGGAGCCCAAGGTACGGTGGA
TGCGGGAGGAGTTGCCGCTGGATGGGGAGGCGGTGTCCCGAATGCTGCTC
GCCCGCCCGGAGCTGCTCCGCCCAAGCCTTGAGCGGACACTCCGGCCAAA
GATGCCGTGGCTGCGCGACGCGCTCGGGGCGAGCCCGGAGCAGTGTGCGA
ACATTGTGCACAAATACCCCGAACTCCTCGGGTGCAGCATCGACAACAAC
CTCAAACCCACGCTGGACTTCTTCATGGAGGAGCTGGGGGGGGGGCGGGA
CGCGCCCCAGACGCGTGCCATCATCTTGGGAGGTATGGGGGTCCTCAAGG
CGTCGCTTAGCAAGCGGCTACGGCCCCGCGCCGAGGCCATGCGGGCCGCA
GGGCTCGTCCCGGACTTTGCCGCCCACGGGCGCATCATGGCGGGCTATAC
GGACAAGAAGTTTGAGGGGTGGCTTAGGCGTCCCCACGCGCAATAG
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