mRNA_S-ischiensis_contig10.1604.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1604.1
Unique NamemRNA_S-ischiensis_contig10.1604.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Match: D7FZB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.510e-33
Identity = 80/135 (59.26%), Postives = 95/135 (70.37%), Query Frame = 2 
Query:  161 GCR-GMMMMAKPGGAKK--SGKKGHDSQDSVSKVFLKMIDSQPTPL-EVSEEEAQRNFEIGRLYNQKMAARHNQRMAALQMKICLRDNAIAQLPEALQLAARQRDTNPPPLNRRMARYTPPIPGYKPEDAATEDN 553
            GCR GMMM AKPG  KK  SGK    + D  +   LK++D++P P+ E+S EE QRNF+IGR YN KMA  HN+RMA L  KI LRD+AIA LPE LQ AARQ D NPPPLNRR+A YTPPIPG+  +D    D+
Sbjct:   46 GCRRGMMMAAKPGKIKKERSGK----ALDKKTMTLLKLLDARPEPMPELSAEEKQRNFDIGRRYNSKMATSHNERMADLTTKIKLRDDAIAHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKKDYGLSDD 176
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BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Match: A0A7S2CE12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CE12_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-5
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 2 
Query:  248 KVFLKMIDS-QPTPLEVSEEEAQRNFEIGRLYNQKMAARHNQRMAALQMKICLRDNAIAQLPE-------ALQLAARQRDTNPPPLNRRMARYTPPIPGYKPED 535
            K FL +IDS + TP  V EEEA R  ++   Y +  +  HN  M  +Q+K+ L+  A+A LPE        L  A    D    PL+ R   YTPPI GYK +D
Sbjct:   36 KFFLSIIDSPRRTPPPVDEEEAARRHKLANEYQRGCSREHNHMMWNMQLKVDLKSQAMAALPEDQLEYANTLPTAEELYDF---PLDFRYPTYTPPIQGYKADD 136
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZB4_ECTSI2.510e-3359.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CE12_9STRA1.210e-539.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3001055..3005750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue6e-30
Seed eggNOG ortholog2880.D7FZB4
EggNOG OGs2D19J@1,2S4VG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L28/L40, mitochondrial
Ec32 orthologEc-07_001600.1
Exons2
Model size1332
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1604.1prot_S-ischiensis_contig10.1604.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3001092..3004983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.712999-UTR-S-ischiensis_contig10:3001054..30010911622815537.712999-UTR-S-ischiensis_contig10:3001054..3001091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3001055..3001091 +
1695739756.1254356-UTR-S-ischiensis_contig10:3001054..30010911695739756.1254356-UTR-S-ischiensis_contig10:3001054..3001091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3001055..3001091 +
1622815537.7439847-UTR-S-ischiensis_contig10:3004983..30057501622815537.7439847-UTR-S-ischiensis_contig10:3004983..3005750Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3004984..3005750 +
1695739756.191495-UTR-S-ischiensis_contig10:3004983..30057501695739756.191495-UTR-S-ischiensis_contig10:3004983..3005750Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3004984..3005750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.7238631-CDS-S-ischiensis_contig10:3001091..30013421622815537.7238631-CDS-S-ischiensis_contig10:3001091..3001342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3001092..3001342 +
1695739756.1352246-CDS-S-ischiensis_contig10:3001091..30013421695739756.1352246-CDS-S-ischiensis_contig10:3001091..3001342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3001092..3001342 +
1622815537.7340918-CDS-S-ischiensis_contig10:3004706..30049831622815537.7340918-CDS-S-ischiensis_contig10:3004706..3004983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3004707..3004983 +
1695739756.1432414-CDS-S-ischiensis_contig10:3004706..30049831695739756.1432414-CDS-S-ischiensis_contig10:3004706..3004983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3004707..3004983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1604.1

>prot_S-ischiensis_contig10.1604.1 ID=prot_S-ischiensis_contig10.1604.1|Name=mRNA_S-ischiensis_contig10.1604.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MQRCQAFVSSVRRAYRPPRPSEGRCGAGYGGRRLRAGTAEGGCRGMMMMA
KPGGAKKSGKKGHDSQDSVSKVFLKMIDSQPTPLEVSEEEAQRNFEIGRL
YNQKMAARHNQRMAALQMKICLRDNAIAQLPEALQLAARQRDTNPPPLNR
RMARYTPPIPGYKPEDAATEDNRVP*
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mRNA from alignment at S-ischiensis_contig10:3001055..3005750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1604.1 ID=mRNA_S-ischiensis_contig10.1604.1|Name=mRNA_S-ischiensis_contig10.1604.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4696bp|location=Sequence derived from alignment at S-ischiensis_contig10:3001055..3005750+ (Schizocladia ischiensis KU_0333)
GGCTGCACGGCTTTGCCCCTGGTTCGAGACCGTCAAAATGCAACGTTGCC
AGGCATTTGTTTCGTCAGTCCGGCGAGCCTACCGGCCGCCAAGGCCAAGC
GAGGGACGTTGCGGCGCCGGATACGGTGGAAGGCGGTTAAGAGCGGGAAC
CGCGGAGGGGGGGTGCCGGGGCATGATGATGATGGCCAAGCCTGGAGGCG
CGAAGAAGAGTGGGAAGAAAGGCCACGACAGCCAGGACTCTGTCAGCAAG
GTCTTCCTCAAGATGATCGACTCCCAGCCAACGCCACTGTGAGAACACGG
CATGCAGCGGGCGCACCTCTTTGCCCAGCCGCCATTTCTTGAACACCTTG
CGATTTTGCTCGGACACTTCTTGTCCCATGTCGGATTGTATGAGCGTTCG
GGATGAGGGAAGCCGCCCCAGAGTTTTACAGCCTTGGGGTCTGTGTTTGC
CAGGTGGAATGCAGTTGTCTGTACCGTAAACACCTACACACCTACACGCA
CATCACGGTAGATTGCTTGCTGGGGAGGTTGGCAAGGGTCCCCATCTGCT
AGCCCAAGCCACAGCGGGGCAGTGCGACACCAACAGCGCGGTAGTCTATT
TATGGAGACCTGATATGGTGGCCGGCGTTCTGAGACTCTATACTTTCTCA
GTCGAGGCGTGCGGTCAACGGTCTTGGGGCTGAGTACGGCACACGACGTG
AGTAAGTACATATACACGCACGCACGTATGTGAGTACGTATATATGTACT
TGAGGTACTTTGCAGTACTCGAGTACTAGCGTGCTCTGATGTCGATGACC
ATTGCTCGCCCCGGGGCCTGGAGATTGGCAAGTTCAGGCCCTTGCCATGC
TGATTTCTTTTCTCCAGCAGAACGGCATAATAGCAGTGCGATTTCCCGGG
CTCTTTTCCCAATTTTTTAAGAGGATCTCAGATGGTAGAGCCCCAGTAAA
ACTGACTTCTGAAGGAAAAGGAAGAATCCTCGCGAGAAGGACGGCCTGTG
AGCGGGCAAGGCACAGATGAACTGGGAACGTGCACGTTTGCGGCGCTTGC
GGGGGGGCAGCCGCGTGTTTTCCCTGGGTTTCGTCCCGAGGCAACACAGT
CTATGTGTTTGGGTGTACTATTGTCGCACAGGCAGCTACCCCATCCTGTG
CATACCTCCGGTCGTTGGGCCCGCCAACCGATAGGAAAATACCCCCCGCA
CAGTGCCAGCCGTTGTGTACTGTATGTACTCACGTTGGACAGGGGACACG
CCATCCTGTGCATGCCACCGACCGTCAGCCCAGCATATATATATGTACTC
ACGTGGTGCTTGCCGTAGTCCGGAGACCATTGACCCCGCGCCTCGTGCGA
GACGGAGCAGGACCCCTCCCTCCCCTGGCAGAGCCAGGGTGGGAGCGGGT
GGCCACCCCCCCGCCAGAGGCGGAGGGGCGGGCAAGTCCATACCCCCCCC
ATCCCGGGCTCGTGAGCGTCTGGGTGGGGAGGGCCCCTCCCTGCGTCGGC
CCAGTATCTAGAGTAAGTACTTGCTGGACCGCCAGCCAGCCCCCGCAGGG
TAGCCTTTCGGCCACTGGCCCTGCGTCCCTACGGAGCATACCGGGTTCTC
ACGGGCCAGGGGATGGGTTGTACTGTACAGCACTGATCCCCGGCTCGCCA
TTGGGCGCCCCCGGGACAACGGCATTTCTACCATTCGCCCTTGATCGGGG
GAGCAAGCCGGATGATTGGCTGTCATGAGCAGGAAGCGGCGCAACCCGTA
CATCTTTCTTGCGCCCATGTTTGTGCAAAGTCCCATTTTTTGCCGAAAAT
CGTGGGCCTATGGGGGATTCGAAACCGCGACCTTCGGGTTATGCACCCGC
TCCTGGACCACTCGACCAAACAAGTGCTTTGTGTACCTCCGTAAGTCGTA
TCCGAATATTTGCGTGAAGAGCAGGGCCGCGGGGCCGGCTGCCGAGTAAA
CAGTTCTAAACAACGCGCTGCCGCTGACAGAGCAGGTTGTGGCTAGCGTC
CCTGGCTCATTCCGTGCCAATTCGCAGCACAACGGTGCGGCGGTTCTGAC
GCCGCAATGCTTGCTCAAGTTCCTGAGGACGGGGATTACTTTGGTATCGT
AGGTACCCCAGTTCTCATGTATCTTGAAGGAGGGGTTAACGTCGGGCTGT
CGACGATGCACATATGGCTATGTTTGAAGCCAATGAGTACTTCCAAGTAC
GTACTCGTACATATACTGCCAAGTATATACATAGCGTTGGGCTGTCGACT
GTGCACGTATGGCTGTGTTGGAAGACAGCCAATGAATACTTCCAAGTGCC
TGTGTATGCACCCACTGCTAGCACTTTCCTCCAAGGGCAGAGATGATTTG
GCATGGCCACTATCTCACTCACTGCCTGGCACTGAGTAACGGCCCCCGAG
TTTGTGTGTAGAGTACCGTACTGAGCGTGCTGAGTGGTGAGCCCGGGTGA
AAGGCTGCCGACTCGTGTGCTACAGCCTTGTTGTGTCAACCGCCAGAAGC
TGTACACCCCCTCCCACCCTGGCTTGCATAGCACCGTTCGAGGTCCGCGC
GCCGTATATGTGTCGTTAAAATGTTTTTGATGTGATGTGATGTGATGTCA
AACTACACTATGCGATATGATGTTACCTCTCCTGCACTGTAGTTTGACAT
CAAATCACATCAGTTGTCACGGCCCGGTGGAAAGAAAGGGAGGCGTCGGC
GAAATGATGATCCGGCGTCGGCAAATACAGCCGGCACCGGTTATGGAAAA
TGACTGTTTTCAACCATGCCGCGCAGGGAATAAACTCTTCACATCGGCGA
TGACGGACAGAATGAACAAAGATTGTTCCGTGGACAAAGCAAGCGCGCGT
GCGAGGCTCCGAGGCTCGTGCCTCCGAAGATTGGTGTCAGCCCTCGAATT
GGCGCTAGTGCTGCCAGGGGCGGGAAGGGGCTTGCTCCGTCTCGGTCGAG
GCGCTATAGGGGTCAATGGTCTCGGGGCTGCGGCAAGCACTGTTAGGTGT
GGGTACTCGAGTGTTTACGTATTTACATGTGCTGTGTGTTGGTGACTGTG
GCCTCGGGGGTCAGGAGAGCCGCCCCACCTCGTACTCTCAAGTATATCAT
ATCACTCCTGCCCTGGCGAGCCAAGGAAGGGCCACTGCTGAGGTGGCCTG
CACCTCGCCCTGTGTTGTTGCCATCCTGCTAATCCTCACATCATAGTGTT
TGGAAGTAACAGCGGACCTCTTGCGACTTGGGCATCACCACTCGAAAGTC
CCACTGCACTTTCGGGTGGACCCCTCCAGGTGGACAACCCTACCTCACAC
CCTGTGAGTCTGGAGACGTTTGCTATCCCGTAGGACCCTCTGTACAGTGG
AAGACTACAGTGCCGTGTACTACTGTACGTGCGTTTCGTGTGGGGATTGG
TGTAACCGCCGCAGTCCTCCACAGGGCCGACTGCCCTCACATTTGCCCAA
AGGGTAGCTCATGCACAAGCACGCCTACACTGGCAAGTACTTCGAAACAC
TGACTTACTTTGATGGCAGCATCGCGGCACTGACCCTCCGTAGGACTTAC
TTCCCCTCTCCCCGCGAAACCCCGGCCCTTCCGAACGGCCCGCCCTCTCC
CACCGCCCCGCCGATTTTCGATCTTTTTATCTCGTGTATCTTTTCTTAAC
AGGGAGGTGTCGGAGGAGGAAGCCCAGAGGAACTTTGAGATCGGACGGCT
CTACAACCAGAAGATGGCCGCCCGCCACAACCAGCGCATGGCCGCCCTCC
AGATGAAGATCTGCCTAAGAGACAACGCCATTGCGCAGCTCCCAGAGGCA
CTGCAGCTGGCCGCCCGGCAGCGGGACACAAATCCCCCGCCGCTCAACCG
CCGCATGGCCCGGTACACGCCTCCCATACCCGGGTACAAGCCGGAAGACG
CTGCTACAGAAGACAACAGGGTGCCATGAACCGCCTCATGCACCGTGCCT
TTCGGTGTGCGGCGGCGTGTGTGTGCCTCGCCCGCTTTGCGAGGGTGTGT
GTGACCGCATCCCAGTACTGTAGTCGCGCACAGCGCCACGGCGTTGCAGT
AGAGCTAGCGCAGCTTGGAGCGACAATCAGTGTGCACTGCGGCGTCTCAC
AGTATGCGTTGGTTGATATTGCCCGATAAGCCGAATGAGGCGTACAGTAG
TTAGTACGAGTACTTCGTATATACAAAGTACTCTACATATGTACTCACGT
TGTGCTTGTCGTAGTCCCGAGACTTTAGCCATTGGGCACGTGCCGTTGAC
GAAGGAGCAATCTCCCTCCCGCCCCTGGCAAGCCAGAGTGGGAGGGAGGG
ACCGCCCCCCCCGCTCATGGCGGGCGAGTGGTTGGGTACGTGAGTGTAGT
ACTATTCCCTCCCACCCTGGCTCTGCCAGGGGAGGGAAGGGGTCTGCTCC
TTCTCGATCGAGGTGCGTGGTCAATGGTCTCGGTACTACGGCAAGCACAA
TGTGGGTACATATATACATACTACCGGTAATGTCAGTACTCGTACTCTAT
ACTTCCAAGTACTTACAAGCACTTGCCGGACCCTGCATCCAAGCGAGCGA
TTGGCAGCTGGTCCGCGTCCCTCTTGACAAACCTGTACGCCTCCACAAAG
ATACTAACTAAAATTCTTGGCAATGAGCTGGAGCCCTCTGCCGGAGTTGA
CCAGGGCCTCGGCAGTATGGAGCAACCTGCAGCTGGCCCCAAGCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3001055..3005750+

>mRNA_S-ischiensis_contig10.1604.1 ID=mRNA_S-ischiensis_contig10.1604.1|Name=mRNA_S-ischiensis_contig10.1604.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig10:3001055..3005750+ (Schizocladia ischiensis KU_0333)
ATGCAACGTTGCCAGGCATTTGTTTCGTCAGTCCGGCGAGCCTACCGGCC
GCCAAGGCCAAGCGAGGGACGTTGCGGCGCCGGATACGGTGGAAGGCGGT
TAAGAGCGGGAACCGCGGAGGGGGGGTGCCGGGGCATGATGATGATGGCC
AAGCCTGGAGGCGCGAAGAAGAGTGGGAAGAAAGGCCACGACAGCCAGGA
CTCTGTCAGCAAGGTCTTCCTCAAGATGATCGACTCCCAGCCAACGCCAC
TATGCAACGTTGCCAGGCATTTGTTTCGTCAGTCCGGCGAGCCTACCGGC
CGCCAAGGCCAAGCGAGGGACGTTGCGGCGCCGGATACGGTGGAAGGCGG
TTAAGAGCGGGAACCGCGGAGGGGGGGTGCCGGGGCATGATGATGATGGC
CAAGCCTGGAGGCGCGAAGAAGAGTGGGAAGAAAGGCCACGACAGCCAGG
ACTCTGTCAGCAAGGTCTTCCTCAAGATGATCGACTCCCAGCCAACGCCA
CTGGAGGTGTCGGAGGAGGAAGCCCAGAGGAACTTTGAGATCGGACGGCT
CTACAACCAGAAGATGGCCGCCCGCCACAACCAGCGCATGGCCGCCCTCC
AGATGAAGATCTGCCTAAGAGACAACGCCATTGCGCAGCTCCCAGAGGCA
CTGCAGCTGGCCGCCCGGCAGCGGGACACAAATCCCCCGCCGCTCAACCG
CCGCATGGCCCGGTACACGCCTCCCATACCCGGGTACAAGCCGGAAGACG
CTGCTACAGAAGACAACAGGGTGCCATGAGGAGGTGTCGGAGGAGGAAGC
CCAGAGGAACTTTGAGATCGGACGGCTCTACAACCAGAAGATGGCCGCCC
GCCACAACCAGCGCATGGCCGCCCTCCAGATGAAGATCTGCCTAAGAGAC
AACGCCATTGCGCAGCTCCCAGAGGCACTGCAGCTGGCCGCCCGGCAGCG
GGACACAAATCCCCCGCCGCTCAACCGCCGCATGGCCCGGTACACGCCTC
CCATACCCGGGTACAAGCCGGAAGACGCTGCTACAGAAGACAACAGGGTG
CCATGA
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