prot_S-ischiensis_contig10.1604.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig10.1604.1
Unique Nameprot_S-ischiensis_contig10.1604.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length176
Homology
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BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Match: D7FZB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.980e-36
Identity = 80/135 (59.26%), Postives = 95/135 (70.37%), Query Frame = 0 
Query:   42 GCR-GMMMMAKPGGAKK--SGKKGHDSQDSVSKVFLKMIDSQPTPL-EVSEEEAQRNFEIGRLYNQKMAARHNQRMAALQMKICLRDNAIAQLPEALQLAARQRDTNPPPLNRRMARYTPPIPGYKPEDAATEDN 172
            GCR GMMM AKPG  KK  SGK    + D  +   LK++D++P P+ E+S EE QRNF+IGR YN KMA  HN+RMA L  KI LRD+AIA LPE LQ AARQ D NPPPLNRR+A YTPPIPG+  +D    D+
Sbjct:   46 GCRRGMMMAAKPGKIKKERSGK----ALDKKTMTLLKLLDARPEPMPELSAEEKQRNFDIGRRYNSKMATSHNERMADLTTKIKLRDDAIAHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKKDYGLSDD 176
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BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Match: A0A7S2CE12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CE12_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-6
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 0 
Query:   71 KVFLKMIDS-QPTPLEVSEEEAQRNFEIGRLYNQKMAARHNQRMAALQMKICLRDNAIAQLPE-------ALQLAARQRDTNPPPLNRRMARYTPPIPGYKPED 166
            K FL +IDS + TP  V EEEA R  ++   Y +  +  HN  M  +Q+K+ L+  A+A LPE        L  A    D    PL+ R   YTPPI GYK +D
Sbjct:   36 KFFLSIIDSPRRTPPPVDEEEAARRHKLANEYQRGCSREHNHMMWNMQLKVDLKSQAMAALPEDQLEYANTLPTAEELYDF---PLDFRYPTYTPPIQGYKADD 136
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZB4_ECTSI3.980e-3659.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CE12_9STRA2.040e-639.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019192Ribosomal protein L28/L40, mitochondrialPFAMPF09812MRP-L28coord: 77..168
e-value: 1.9E-7
score: 31.3
IPR03914539S ribosomal protein L40, mitochondrialPANTHERPTHR1335939S RIBOSOMAL PROTEIN L40, MITOCHONDRIALcoord: 69..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3001092..3004983 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1604.1mRNA_S-ischiensis_contig10.1604.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig10 3001055..3005750 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig10.1604.1 ID=prot_S-ischiensis_contig10.1604.1|Name=mRNA_S-ischiensis_contig10.1604.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MQRCQAFVSSVRRAYRPPRPSEGRCGAGYGGRRLRAGTAEGGCRGMMMMA
KPGGAKKSGKKGHDSQDSVSKVFLKMIDSQPTPLEVSEEEAQRNFEIGRL
YNQKMAARHNQRMAALQMKICLRDNAIAQLPEALQLAARQRDTNPPPLNR
RMARYTPPIPGYKPEDAATEDNRVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019192Ribosomal_L28/L40_mit
IPR039145MRPL40