mRNA_S-ischiensis_contig1.1213.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1213.1
Unique NamemRNA_S-ischiensis_contig1.1213.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.120e-42
Identity = 101/225 (44.89%), Postives = 125/225 (55.56%), Query Frame = 1
Query:  154 ALLQALLGRLGRHRLRFASALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAAR------RRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPP-AALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
            A L+ +L    R R   +  L +  R++L  F+FDGR   +AMRA GARL   R      R +Y++LG+ +LL+   EA  A+       R      L +S       E   G+  G          P+ L G  +G +A      + P  PA+    TP   AL PPS RRCSLCMS REN AATPCGHLFCW C+VGWCQTNPECPLCRQPV PQSIVC+YQY
Sbjct:  225 AFLRRVLAWARRRRPAMSGVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAARTRYAVLGLLLLLQAAAEAATASAETAERWRATARAALSESFPRSTEGEAVCGEGGG----------PSDL-GEGVGDTA------LPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQY 432          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.450e-34
Identity = 86/202 (42.57%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  205 ASALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            A  L +L   +L LFF +GR+   AMRAA  RLM NR     P  +Y++LGV ML R   E    A R+L   +  D        +G+ G     +   A+ RVP +                 G  + A+   +            RC+LCM PRE+TAAT CGHLFCW C+VGWC+TNPECPLCRQP EPQSIVCVY YD
Sbjct:  205 ARVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDA-PLPRYTILGVLMLARFGFEFGAQAARKLHGIIFSDG-------DGSGGXXXXXKANLASQRVPGLS----------------GSDTEAAARRH------------RCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHYD 370          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: W4GFD0_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.390e-23
Identity = 73/205 (35.61%), Postives = 104/205 (50.73%), Query Frame = 1
Query:  208 SALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPR-AQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSA----RRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
            +A+S L ++++ LFF  G +  L+ R AG R +L+  P+     AQ+S+LG  +L+R    A + A   LP  +               G R     A +  RVP +                  P +P       PP   LP S+    ++C+LC++ R + +ATPCGHLFCW C+VGWCQ+ PECPLCRQ V PQ I C+Y Y
Sbjct:  101 AAVSGLLQLHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIR----AALTASFTLPTIV-----------RAVMGTRLAPPSAASTHRVPCLAV----------------PITP------NPPPRQLPSSSPQRIKKCALCLAERSHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 268          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A3R6XHB0_9STRA (RING-type domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XHB0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.450e-23
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 1
Query:  208 SALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPR-AQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSA----RRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
            +A+S L ++++ LFF  G +  L+ R AG R +L+  P+     AQ+S+LG  +L+R    A + A   LP  +               G R     A +  RVP  LP P+  +                     PP   LP S+    ++C+LC++ R + +ATPCGHLFCW C+VGWCQ+ PECPLCRQ V PQ I C+Y Y
Sbjct:  170 AAMSGLLQLHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIR----AALTASFTLPTIV-----------RAVMGTRLAPPSAASTHRVP-CLPVPTTPK---------------------PPPRQLPSSSPQRIKKCALCLAERNHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 337          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A2I0VIK7_9ASPA (Peroxisome biogenesis factor 10 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VIK7_9ASPA)

HSP 1 Score: 108 bits (271), Expect = 4.950e-23
Identity = 60/194 (30.93%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  229 RVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            R NLM F+F+G ++ ++ RAAG R +    P+ + R +Y +LG+F+L+++ + A    RR   + +              H    G  ++     +P +    ++   A      +G     S  + T   + +P S  +C+LC+S R++  AT CGH+FCW C++ WC   PECPLCR P+   S+VC+Y  D
Sbjct:  130 RANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQ-RLRYQILGIFLLVQLCILAAEGLRRSNFSSIA----------SSVHPSSLGGHQSSTGRGLPVLNEDGNLITDAAIKKSSLG-----SDSLTT--ESQVPVSISKCTLCLSTRQHPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIYHSD 305          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6P4A8F7_ZIZJJ (peroxisome biogenesis factor 10 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A8F7_ZIZJJ)

HSP 1 Score: 110 bits (275), Expect = 5.730e-23
Identity = 66/200 (33.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:  214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILP-GPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            L  + R NLM F+F+G ++ ++ RAAG R +    P+ + R +Y +LGVF+L+++ + AV   RR   + +             AH    G   + A   +P +   G  I  S          SS +     T           +C+LC+S R++  ATPCGH+FCW C++ WC   PECPLCR P+   S+VC+Y  D
Sbjct:  215 LQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQ-RPRYQILGVFLLVQLCIIAVEGLRRSNLSSIA----------SSAHHTSSGMHHSSAERGLPVLNEEGNLISVSTDKRSWMYDSSSTSESQATT--------GMSKCTLCLSDRQHPTATPCGHVFCWSCIMEWCNEKPECPLCRTPITHSSLVCLYHSD 395          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A067GGG7_CITSI (RING-type domain-containing protein n=7 Tax=Citrus TaxID=2706 RepID=A0A067GGG7_CITSI)

HSP 1 Score: 110 bits (274), Expect = 5.900e-23
Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            L  + R NLM F+F+G ++ ++ R AG R +    P  + R +Y +LGVF+L+++ + A    RR   + +              H    G ++A     +P +    S+  S       V  S+  S     P  +       +C+LC+S R++  ATPCGH+FCW C++ WC   PECPLCR P+   S+VC+Y  D
Sbjct:  194 LQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQ-RPRYQILGVFLLIQLCIIAAEGLRRSNLSSIA----------SSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVS-------KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 374          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: T0Q7Z6_SAPDV (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q7Z6_SAPDV)

HSP 1 Score: 109 bits (273), Expect = 6.110e-23
Identity = 64/192 (33.33%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  232 VNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
            V+L LF+  GR+  +A R AG R +L R     P AQ+S+LG  +LLR+ + +V+     L   L  +       Q                 RVP+    P++                                 R+C+LC++ R + A TPCGH+FCW C+VGWCQ  PECPLCRQ V+PQ + C+Y Y
Sbjct:  211 VHLALFYLHGRYFDMAKRVAGIRYILTRK-LDAPHAQFSILGYLILLRLALSSVLGLSACLRTLLGVEVAPRRLDQH----------------RVPSDESRPTVTAQ------------------------------RKCALCLTERSHPAMTPCGHVFCWECIVGWCQNKPECPLCRQLVQPQDVKCIYSY 355          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6I9TKZ1_SESIN (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9TKZ1_SESIN)

HSP 1 Score: 110 bits (274), Expect = 8.010e-23
Identity = 67/194 (34.54%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  229 RVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            R NLM F+F+G ++ L+ RAAG R +    P  + R +Y +LGVF+L+++ + A    RR   + L   S      Q+ +HG  + S    A   +P +    ++          V  S+P S    +           +C+LC+S R+N  ATPCGH+FCW C++ WC   PECPLCR P    S+VC+Y  D
Sbjct:  223 RANLMFFYFEGLYYHLSKRAAGIRYVFIGKPTNQ-RPRYQILGVFLLVQLCIIAAEGLRR---SNL---STFATSFQQTSHGAYQTS----AGRGLPVLNEEGNLITEDSGKSSWVHESTPTSESQAS--------GVSKCTLCLSNRQNPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLYHSD 397          
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A5N6RP28_9ROSI (RING-type domain-containing protein n=2 Tax=Betulaceae TaxID=3514 RepID=A0A5N6RP28_9ROSI)

HSP 1 Score: 110 bits (274), Expect = 8.220e-23
Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
            L  + R NLMLF+F+G ++ ++ RAAG   +    P+ + R +Y +LGVF+L+++ V A    RR   + +              H    G+  + A   +P +    ++  +        GP S ++ +              +C+LC+S R++  ATPCGH+FCW C++ WC   PECPLCR P+   S+VC+Y  D
Sbjct:  221 LQLVLRANLMLFYFEGLYYHISKRAAGIHYVFIGKPSNQ-RPRYQILGVFLLIQLCVIAAEGLRRSNLSSIA----------SSVHQTSFGTHSSSAGRGLPVLNEEGNLISADNSNKGSWGPDSSSTSESQV---------TSKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPMTHSSLVCLYHSD 399          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU68_9PHAE6.120e-4244.89RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CLL0_9STRA4.450e-3442.57Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
W4GFD0_9STRA2.390e-2335.61RING-type domain-containing protein n=1 Tax=Aphano... [more]
A0A3R6XHB0_9STRA2.450e-2336.10RING-type domain-containing protein n=8 Tax=Aphano... [more]
A0A2I0VIK7_9ASPA4.950e-2330.93Peroxisome biogenesis factor 10 n=1 Tax=Dendrobium... [more]
A0A6P4A8F7_ZIZJJ5.730e-2333.00peroxisome biogenesis factor 10 n=3 Tax=Ziziphus j... [more]
A0A067GGG7_CITSI5.900e-2331.66RING-type domain-containing protein n=7 Tax=Citrus... [more]
T0Q7Z6_SAPDV6.110e-2333.33RING-type domain-containing protein n=2 Tax=Saprol... [more]
A0A6I9TKZ1_SESIN8.010e-2334.54peroxisome biogenesis factor 10 isoform X1 n=2 Tax... [more]
A0A5N6RP28_9ROSI8.220e-2331.16RING-type domain-containing protein n=2 Tax=Betula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8243585..8246412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue4.2e-37
Seed eggNOG ortholog2880.D8LAW2
Preferred namePEX10
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009987,GO:0010154,GO:0010381,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043094,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048316,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061458,GO:0061640,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140056,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.cAMP binding
EggNOG OGsCOG5574@1,KOG0317@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1353
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1213.1prot_S-ischiensis_contig1.1213.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8243825..8245872 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3854263-UTR-S-ischiensis_contig1:8243584..82438241622815491.3854263-UTR-S-ischiensis_contig1:8243584..8243824Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8243585..8243824 +
1695739732.3714628-UTR-S-ischiensis_contig1:8243584..82438241695739732.3714628-UTR-S-ischiensis_contig1:8243584..8243824Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8243585..8243824 +
1622815491.42089-UTR-S-ischiensis_contig1:8245872..82464121622815491.42089-UTR-S-ischiensis_contig1:8245872..8246412Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8245873..8246412 +
1695739732.4098356-UTR-S-ischiensis_contig1:8245872..82464121695739732.4098356-UTR-S-ischiensis_contig1:8245872..8246412Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8245873..8246412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3986406-CDS-S-ischiensis_contig1:8243824..82440791622815491.3986406-CDS-S-ischiensis_contig1:8243824..8244079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8243825..8244079 +
1695739732.3854477-CDS-S-ischiensis_contig1:8243824..82440791695739732.3854477-CDS-S-ischiensis_contig1:8243824..8244079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8243825..8244079 +
1622815491.4100902-CDS-S-ischiensis_contig1:8245554..82458721622815491.4100902-CDS-S-ischiensis_contig1:8245554..8245872Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8245555..8245872 +
1695739732.3983245-CDS-S-ischiensis_contig1:8245554..82458721695739732.3983245-CDS-S-ischiensis_contig1:8245554..8245872Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8245555..8245872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1213.1

>prot_S-ischiensis_contig1.1213.1 ID=prot_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
MLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEA
VMAARRRLPAGLLRDSAGGGGGQEGAHGQRRGSEEAEAAARVPAILPGPS
IGQSAGAGGGGVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAAT
PCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD*
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mRNA from alignment at S-ischiensis_contig1:8243585..8246412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1213.1 ID=mRNA_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2828bp|location=Sequence derived from alignment at S-ischiensis_contig1:8243585..8246412+ (Schizocladia ischiensis KU_0333)
GCCGCGGCTGCGGGCTTGACCGCCTTCCACCCGCAAGGGCCAGGCTCAGT GGCGGCGGCGGCTGCGACGGGGACGCAGTGGCGCCGGCAGCATGGCAGAG AGGTCTCAAGGAGGGGAGGCGGCAGCGGCCGCAGCCCGGCGCGGGACACC TACGCCTTGCTCCAGGCCCTGCTTGGTCGGCTGGGCCGGCACCGCCTGCG CTTTGCATCGGCGCTGTCCTACCTTCAGCGGGTGAACCTCATGCTCTTTT TCTTCGACGGCCGGCACCACACGCTGGCCATGCGCGCTGCGGGGGCGCGC CTGATGCTCAACCGGACCCCTGCAGGGGAACCTCGTGCGCAATACTCTCT GCTGGGGGTGTTCATGCTGCTCAGGGTGGTGGTGGAGGCTGTAATGGCTG CCCGCAGACGGTTGCCAGCCGGACTGTTGCGCGACAGTGCCGGGGGTGGT GGTGGCCAGGAGGGGGCGCACGGGCAACGGAGGGGCTCTGAGGAGGTGAG CGTTCAAGCCTGAAAATAGAAAAAGATGTGTGCTATTGGTAAGTACTTTG AAGTAGCAAGTACTGTACCGTACCGTATTTGTGTACTGTACTACCCTGCA CCCTGCAGGGGTGGTACTGGTCAGTGGTCCAGTACGGAGTATTATGCTTC GGGGTGTAGTACGTGGCATGCACAGGACATGGGGCGTGAGTACATATATG TAGACTGTGCTGTGCTTGAGGCAAGTACTGCGTGAGTACATGTATATGTG TGCTGTACTTGTAGTGAGTCGTTGGAAGCAAGTGATGTAATGTGATGTAC AGTAGTGTGATGTGACGTGATGTCATGTGATTTACTGTCACGTGATGTAG TAGGTACTAGTACTTGGAAGTAGATGTCGTGGCACGCTCAGGGCGTGGTG GCGGGCTACTTGGAGGCCTATCACTTTGTTGTCCTTACTACAGGACTGCT ACTAGAGTATTGCTGCACATTTCTCCCCTTCCCCACACAAATTTCCCCTG ACGAGCTATAGGGAAGGGCCACTGCTGAGGTCTTTAGTGACGTGGCCTGC ACCTCGCCCTGTGTTGTTCCTGTTAATAATGCTACTACTGTAGTACTACT ACGCCATCCTCCCCCTCCTCCTTCCCCCTCCTCCCCAACACGCTTCCCTG GCAAGCTGAGGAAGATTTGTAGTACGAGTAAGTATTTGGTGACGTGGCCT GAAGCTCGCCCTGCGTTCTTCATTTAGTAGTACAATAGTACCCGTGTCAG TGGCAAATCTTGCTTCCGGAAGTGCTTGCACTCCCTAGCAATCACAGGAC AGGACAGTAGGCGGCTGTTCCGTCATCAGTACTCTAGTCCTACAGTAGGT AGTTAAAATACTGCATGCTTTTTCAGGGTCGTGCTACCGCAGGTGCAGTA GTACTTCCAAGTACTGCCTTGCCAGCCCTAAAACCTCAGGCTGGGCCTGC TGGTCTCCTGAATGCGACCGCCTAAGTACTGTCGTTTGTAGTACAGTGTC TACAAATGTGCCTTGTACGAGTACGTCCATACATATACCTGCTCCGTACC GACCGAAGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACTACGTGA GCACATACATATACTTGCAATGCAAATTTTGTCAATCCACTTCTACGGCG CAAGGTCAGAGTGCCGTACAGTACAGTACATTGTTGTGCTTCGAAGTACA GTAGTTGGACAGTGGTAGACAAGCCACGCGTGCTGAAATAGCCATCACAG TGAAATTTCCACCCTAAATCCACCCGTCGTCGCACCGGGCCCATGGGCTA CTGCATCATGACACCATTGGCACCGTCCCCCGCATCTACAATTGCCCACA GCACTCGAGTTTTCGTAGCCCCTCCGCTGTATCACTCTGAACCCAACCCT AGCCTTAGCCGTAACTACCCCCGTCACCCTTGTTGCACCCCCACGTTTCT TTGGATCGATCCCGCAACAGGCAGAAGCCGCTGCCCGGGTCCCCGCGATC CTTCCGGGCCCAAGTATCGGGCAAAGCGCAGGTGCAGGAGGTGGAGGAGT AGGTCCAAGCTCGCCTGCAAGTGGGGACATGTACACGCCTCCGGCGGCCC TCCTCCCGCCGTCTGCACGGCGTTGCTCGCTGTGCATGAGCCCAAGGGAG AATACAGCGGCCACGCCATGCGGGCACCTCTTCTGCTGGTACTGCGTGGT GGGATGGTGCCAGACCAACCCGGAGTGCCCCCTGTGCCGCCAGCCGGTGG AGCCACAGTCCATTGTGTGCGTCTACCAATACGATTAGTTCAAAAAGGAC CAGCAGAGTGAATAGAAGTACTTCAGCACAGTACGATTAATGGAGCCGCA GTCCATTGTGTGCCTACCAGTACGATTTGAGGGACTAGAGTGACAGAAGT AGAGTACTTGAGTACAGTACGCTTGACTAGAGTAGATAGCCGGCGTGCCG GCGTGATTTTAGTCGGGATTACCTCTACCGCGTCGCGTAAGGCCATCAGT GAAGTGAACCGCACCTCCCTGGTACTTGTTCTGTAAGTTTCCCAGCAAGT TTCTTTGAAGCACTGTAGAGTAGTACAGTATGATGTATGCACACAGTACT TGAGTACTGCACTGGCAGTACTCGTCCGTGTTTGTGCTGACAGGAACAAC ACGGGGCGAGGTCGTCAGTGTTTGTAGGTAACGACTCGATTTCCCAGGCT CTGAGGCTCAGGCTGGCTCACAGGCCGGGCGGATTGAGTGTGAGTTGCAG CACTGGTACAAAGCCAAGTGGGACCACAAAGGCTGCCACAAAGTATTCAC AAGGCCTAACTGTGACGCTCTCTGCGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8243585..8246412+

>mRNA_S-ischiensis_contig1.1213.1 ID=mRNA_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig1:8243585..8246412+ (Schizocladia ischiensis KU_0333)
ATGCTCTTTTTCTTCGACGGCCGGCACCACACGCTGGCCATGCGCGCTGC
GGGGGCGCGCCTGATGCTCAACCGGACCCCTGCAGGGGAACCTCGTGCGC
AATACTCTCTGCTGGGGGTGTTCATGCTGCTCAGGGTGGTGGTGGAGGCT
GTAATGGCTGCCCGCAGACGGTTGCCAGCCGGACTGTTGCGCGACAGTGC
CGGGGGTGGTGGTGGCCAGGAGGGGGCGCACGGGCAACGGAGGGGCTCTG
AGGAGATGCTCTTTTTCTTCGACGGCCGGCACCACACGCTGGCCATGCGC
GCTGCGGGGGCGCGCCTGATGCTCAACCGGACCCCTGCAGGGGAACCTCG
TGCGCAATACTCTCTGCTGGGGGTGTTCATGCTGCTCAGGGTGGTGGTGG
AGGCTGTAATGGCTGCCCGCAGACGGTTGCCAGCCGGACTGTTGCGCGAC
AGTGCCGGGGGTGGTGGTGGCCAGGAGGGGGCGCACGGGCAACGGAGGGG
CTCTGAGGAGGCAGAAGCCGCTGCCCGGGTCCCCGCGATCCTTCCGGGCC
CAAGTATCGGGCAAAGCGCAGGTGCAGGAGGTGGAGGAGTAGGTCCAAGC
TCGCCTGCAAGTGGGGACATGTACACGCCTCCGGCGGCCCTCCTCCCGCC
GTCTGCACGGCGTTGCTCGCTGTGCATGAGCCCAAGGGAGAATACAGCGG
CCACGCCATGCGGGCACCTCTTCTGCTGGTACTGCGTGGTGGGATGGTGC
CAGACCAACCCGGAGTGCCCCCTGTGCCGCCAGCCGGTGGAGCCACAGTC
CATTGTGTGCGTCTACCAATACGATTAGGCAGAAGCCGCTGCCCGGGTCC
CCGCGATCCTTCCGGGCCCAAGTATCGGGCAAAGCGCAGGTGCAGGAGGT
GGAGGAGTAGGTCCAAGCTCGCCTGCAAGTGGGGACATGTACACGCCTCC
GGCGGCCCTCCTCCCGCCGTCTGCACGGCGTTGCTCGCTGTGCATGAGCC
CAAGGGAGAATACAGCGGCCACGCCATGCGGGCACCTCTTCTGCTGGTAC
TGCGTGGTGGGATGGTGCCAGACCAACCCGGAGTGCCCCCTGTGCCGCCA
GCCGGTGGAGCCACAGTCCATTGTGTGCGTCTACCAATACGATTAG
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