mRNA_S-ischiensis_contig1.1202.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1202.1
Unique NamemRNA_S-ischiensis_contig1.1202.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: D8LTD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.780e-38
Identity = 76/140 (54.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHA 420
            FP  VVFG DDLGAFE A++  L WG + L TFPQPP+PVLA +E AL+  DR L+ HL  L VGA +YGWPLLRS F+EVL+R+ WL L D + A A       L  AA V F V+ R+ LL LES E+   FFRR+ +
Sbjct:  103 FPFCVVFGQDDLGAFEAAVSFFLHWGSRLLVTFPQPPVPVLAGMELALQRADRELAAHLKSLSVGALSYGWPLLRSAFSEVLAREEWLCLIDRILANAHQPE---LLEAAVVGFMVSFRKQLLVLESTEEAEAFFRRRQS 239          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A836CHE3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.450e-38
Identity = 75/138 (54.35%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQ 414
            FP +  F  +DL AFE AMTVL  WGR WL TFPQPP+PVL  +EAALR HD RL+ HL + G     YGW LLRS+F+EVL+  AWLRL+DH+ A A   +   L   A VAFA+A R +LL   SR DV  F+  Q
Sbjct:  148 FPFLRAFRGNDLAAFECAMTVLTWWGRAWLVTFPQPPVPVLVGIEAALRRHDARLAAHLRKCGADTVVYGWSLLRSIFSEVLAGDAWLRLWDHIFAAAHDPQ---LLNTAVVAFAIANRDSLLAARSRADVEAFYHSQ 282          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A7S2SEN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEN2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.190e-29
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
            FP V  FG DDL AFET M VL+ W   +L++FP PP+PVL  +  AL++ D RL+ HL  +  G   Y WPLLRS+FT+VL R  WL LFDH+ AG    R  LL +AA +AF    R A+L L S  ++  F   +  V +G
Sbjct:   47 FPFVSFFGTDDLVAFETTMAVLVHWQPHYLSSFPHPPIPVLRALGRALQAMDPRLAAHLHHIKAGPQRYAWPLLRSLFTQVLPRNEWLGLFDHIFAGGEEPR--LLSLAA-LAFLSDHRVAILQLASAAELDTFLSTEQPVHLG 187          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: UPI0014026439 (TBC1 domain family member 31 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014026439)

HSP 1 Score: 112 bits (281), Expect = 3.890e-26
Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMGK 435
            FP V +F  + L  FE   TVL+ W  +W   FP PPL VLA VE AL  HD +L +H    GV A  Y WPLL ++F+EVL+R  WLRLFD + +   A     LP A A A++  AR ALL L   ED   FF  +  VD+G+
Sbjct:  511 FPFVKLFQNNQLVCFEVLATVLVNWCSRWFEYFPNPPLNVLACVENALAHHDHQLLQHFVEHGVTAQVYAWPLLETLFSEVLTRDEWLRLFDWVLSRPPA----FLP-AVAAAYSSCARGALLRLTQLEDFQFFFHHRGGVDVGR 650          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A6S8ANP3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8ANP3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.270e-26
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
            FP V VF   ++ AFETAM+V+  W   W  ++P PP+ VL  V+  L+  ++RL  HL   G+ A  Y WPLL SVF+EVLS+  WL  +DHL      D+ GLLP A A A+ +    +LL+L  + D+  FFRRQ+ +D+
Sbjct:   31 FPFVKVFHRYEMCAFETAMSVIFNWCSSWFISYPHPPVHVLEGVDEVLKLCNKRLFTHLQDCGLTAETYAWPLLCSVFSEVLSKDEWLIFWDHLFTNP--DKPGLLP-ATAAAYCLYFSNSLLSLNRKCDLEKFFRRQNPLDV 170          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A7S2WC53_9STRA (TBC1 domain family member 31 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC53_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.950e-26
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
            FP V V+G D+L AFET MTVL R    W  +FP  P+ VLA +E  L   D+ L  H + +GV   +Y W LLRS+F+EVL++  WL+L+DH+      D++  L   A VA+    R  LL+L   EDV  FFR+Q+ +D+
Sbjct:  570 FPFVKVYGNDELSAFETVMTVLFRVCTFWFESFPHAPVFVLARIEKLLERTDKHLLNHFTNIGVTNESYAWVLLRSMFSEVLTKGEWLKLWDHVVFYL--DKSPHLLEVACVAYLRYFRNTLLSLRRGEDVAAFFRQQNPIDV 710          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: Q4RFH4_TETNG (TBC1 domain family member 31 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RFH4_TETNG)

HSP 1 Score: 109 bits (272), Expect = 6.150e-25
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
            FP V +F  + L  FE   TV++ W + W   FP PPL +LA+VE  L  HDR+L +HL   GV +  Y WPLL ++F+EVL+R  WLRLFD + +   A       + A VA+    R+ LL    + D   FFR ++ +DM
Sbjct:  565 FPFVKLFQNNPLLCFEMLATVIVNWCQHWFEYFPNPPLNILAMVENVLAHHDRKLLQHLVSCGVTSQVYAWPLLETLFSEVLTRDEWLRLFDSVFSNHPA-----FLLMACVAYVTCCRQLLLKSTQKRDFEYFFRHRNTMDM 702          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A8M1KEN4_CLUHA (TBC1 domain family member 31 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KEN4_CLUHA)

HSP 1 Score: 107 bits (268), Expect = 2.190e-24
Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
            FP V +F  + L  FE   TV++ W + W   FP PPL VL++VE  L  HD+ L +HL    + +  Y WPLL+++F+EVL+R  WLRLFD++ +   A       + A VA+    R  LLTL  RED   FF  ++  D+G
Sbjct:  498 FPFVKLFQNNPLICFEVVATVIVNWCQHWFEYFPNPPLNVLSMVENVLAHHDKELLQHLVDCHITSQLYAWPLLQTLFSEVLTRDEWLRLFDNVFSNHTA-----FLLVAVVAYVTCCRVQLLTLAFREDFEYFFHHRNNFDIG 636          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: UPI001C0872FA (TBC1 domain family member 31 isoform X1 n=4 Tax=Alosa TaxID=34772 RepID=UPI001C0872FA)

HSP 1 Score: 107 bits (267), Expect = 2.980e-24
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
            FP V +F  + L  FE   TV++ WG+ W   FP PPL VL++VE  L  HD+ L +HL    + +  Y WPLL ++F+EVL+R  WLRLFD++ +   A       + A VA+    R  LL L  RED   FF  ++  D+G
Sbjct:  498 FPFVKLFQNNPLICFEVVATVIVSWGQHWFEYFPNPPLNVLSMVENVLAHHDKELLQHLVDCRITSQLYVWPLLETLFSEVLTRDEWLRLFDNVFSNHPA-----FLLVAVVAYVTCCRAQLLMLTFREDFEYFFHHRNNFDIG 636          
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A6P8THW0_GYMAC (TBC1 domain family member 31 n=3 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8THW0_GYMAC)

HSP 1 Score: 107 bits (266), Expect = 4.030e-24
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
            FP V +F  + +  FE   TV++ WG+ W   FP PPL +L++ E  L  HD+ L +HL   G+ +  Y WPLL ++F+EVL+R+ WLRLFD++ +    +    L + A VA+    R  LL    +ED   FF  ++ +D+G
Sbjct:  494 FPFVKLFQNNPMLCFEVVATVIVNWGQHWFEYFPNPPLNILSMAENVLAHHDKELLQHLVDCGITSQLYVWPLLETLFSEVLTREEWLRLFDNIFS----NHPSFL-LLACVAYITCCREPLLLCSQKEDFEYFFHHRNNLDLG 632          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD1_ECTSI2.780e-3854.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHE3_9STRA7.450e-3854.35Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
A0A7S2SEN2_9STRA2.190e-2946.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00140264393.890e-2645.52TBC1 domain family member 31 isoform X1 n=2 Tax=Pe... [more]
A0A6S8ANP3_9STRA9.270e-2643.36Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2WC53_9STRA9.950e-2643.36TBC1 domain family member 31 n=1 Tax=labyrinthulid... [more]
Q4RFH4_TETNG6.150e-2540.56TBC1 domain family member 31 n=1 Tax=Tetraodon nig... [more]
A0A8M1KEN4_CLUHA2.190e-2440.28TBC1 domain family member 31 n=1 Tax=Clupea hareng... [more]
UPI001C0872FA2.980e-2440.28TBC1 domain family member 31 isoform X1 n=4 Tax=Al... [more]
A0A6P8THW0_GYMAC4.030e-2437.50TBC1 domain family member 31 n=3 Tax=Gymnodraco ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8123484..8123918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue5.3e-32
Seed eggNOG ortholog2880.D8LTD1
Preferred nameTBC1D31
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0008047,GO:0008150,GO:0015630,GO:0030234,GO:0030695,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG1093@1,KOG1093@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.4494638-CDS-S-ischiensis_contig1:8123483..81239181622815490.4494638-CDS-S-ischiensis_contig1:8123483..8123918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8123484..8123918 +
1695739731.80704-CDS-S-ischiensis_contig1:8123483..81239181695739731.80704-CDS-S-ischiensis_contig1:8123483..8123918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8123484..8123918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1202.1prot_S-ischiensis_contig1.1202.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8123484..8123918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1202.1

>prot_S-ischiensis_contig1.1202.1 ID=prot_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRS
HDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAA
DRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMGK
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mRNA from alignment at S-ischiensis_contig1:8123484..8123918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1202.1 ID=mRNA_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=435bp|location=Sequence derived from alignment at S-ischiensis_contig1:8123484..8123918+ (Schizocladia ischiensis KU_0333)
TTCCCCCTGGTGGTTGTCTTCGGGGCGGATGACCTCGGCGCGTTTGAGAC GGCCATGACCGTCCTCCTGCGCTGGGGCCGCCAGTGGCTGGCCACCTTCC CCCAGCCGCCGCTGCCGGTCCTGGCTCTCGTGGAGGCCGCGCTCCGCAGC CACGACCGCCGCCTCTCCCGCCACCTGAGCCGGCTCGGAGTTGGGGCTGC CGCCTACGGCTGGCCACTGCTCCGCAGCGTGTTCACGGAGGTCCTGTCGC GGAAGGCGTGGCTGCGGCTGTTCGACCACCTCTGTGCGGGCGCCGCCGCC GACCGGGCAGGCCTGCTGCCCATCGCGGCGGCCGTGGCGTTCGCGGTGGC TGCCAGGAGGGCGCTGCTGACGCTGGAGTCACGGGAGGATGTGGGAGGCT TCTTTCGCCGGCAGCACGCTGTGGACATGGGGAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8123484..8123918+

>mRNA_S-ischiensis_contig1.1202.1 ID=mRNA_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig1:8123484..8123918+ (Schizocladia ischiensis KU_0333)
TTCCCCCTGGTGGTTGTCTTCGGGGCGGATGACCTCGGCGCGTTTGAGAC
GGCCATGACCGTCCTCCTGCGCTGGGGCCGCCAGTGGCTGGCCACCTTCC
CCCAGCCGCCGCTGCCGGTCCTGGCTCTCGTGGAGGCCGCGCTCCGCAGC
CACGACCGCCGCCTCTCCCGCCACCTGAGCCGGCTCGGAGTTGGGGCTGC
CGCCTACGGCTGGCCACTGCTCCGCAGCGTGTTCACGGAGGTCCTGTCGC
GGAAGGCGTGGCTGCGGCTGTTCGACCACCTCTGTGCGGGCGCCGCCGCC
GACCGGGCAGGCCTGCTGCCCATCGCGGCGGCCGTGGCGTTCGCGGTGGC
TGCCAGGAGGGCGCTGCTGACGCTGGAGTCACGGGAGGATGTGGGAGGCT
TCTTTCGCCGGCAGCACGCTGTGGACATGGGGAAGTTCCCCCTGGTGGTT
GTCTTCGGGGCGGATGACCTCGGCGCGTTTGAGACGGCCATGACCGTCCT
CCTGCGCTGGGGCCGCCAGTGGCTGGCCACCTTCCCCCAGCCGCCGCTGC
CGGTCCTGGCTCTCGTGGAGGCCGCGCTCCGCAGCCACGACCGCCGCCTC
TCCCGCCACCTGAGCCGGCTCGGAGTTGGGGCTGCCGCCTACGGCTGGCC
ACTGCTCCGCAGCGTGTTCACGGAGGTCCTGTCGCGGAAGGCGTGGCTGC
GGCTGTTCGACCACCTCTGTGCGGGCGCCGCCGCCGACCGGGCAGGCCTG
CTGCCCATCGCGGCGGCCGTGGCGTTCGCGGTGGCTGCCAGGAGGGCGCT
GCTGACGCTGGAGTCACGGGAGGATGTGGGAGGCTTCTTTCGCCGGCAGC
ACGCTGTGGACATGGGGAAG
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