mRNA_S-ischiensis_contig1.1202.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: D8LTD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD1_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.780e-38 Identity = 76/140 (54.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHA 420
FP VVFG DDLGAFE A++ L WG + L TFPQPP+PVLA +E AL+ DR L+ HL L VGA +YGWPLLRS F+EVL+R+ WL L D + A A L AA V F V+ R+ LL LES E+ FFRR+ +
Sbjct: 103 FPFCVVFGQDDLGAFEAAVSFFLHWGSRLLVTFPQPPVPVLAGMELALQRADRELAAHLKSLSVGALSYGWPLLRSAFSEVLAREEWLCLIDRILANAHQPE---LLEAAVVGFMVSFRKQLLVLESTEEAEAFFRRRQS 239
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A836CHE3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE3_9STRA) HSP 1 Score: 142 bits (357), Expect = 7.450e-38 Identity = 75/138 (54.35%), Postives = 90/138 (65.22%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQ 414
FP + F +DL AFE AMTVL WGR WL TFPQPP+PVL +EAALR HD RL+ HL + G YGW LLRS+F+EVL+ AWLRL+DH+ A A + L A VAFA+A R +LL SR DV F+ Q
Sbjct: 148 FPFLRAFRGNDLAAFECAMTVLTWWGRAWLVTFPQPPVPVLVGIEAALRRHDARLAAHLRKCGADTVVYGWSLLRSIFSEVLAGDAWLRLWDHIFAAAHDPQ---LLNTAVVAFAIANRDSLLAARSRADVEAFYHSQ 282
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A7S2SEN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEN2_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.190e-29 Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
FP V FG DDL AFET M VL+ W +L++FP PP+PVL + AL++ D RL+ HL + G Y WPLLRS+FT+VL R WL LFDH+ AG R LL +AA +AF R A+L L S ++ F + V +G
Sbjct: 47 FPFVSFFGTDDLVAFETTMAVLVHWQPHYLSSFPHPPIPVLRALGRALQAMDPRLAAHLHHIKAGPQRYAWPLLRSLFTQVLPRNEWLGLFDHIFAGGEEPR--LLSLAA-LAFLSDHRVAILQLASAAELDTFLSTEQPVHLG 187
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: UPI0014026439 (TBC1 domain family member 31 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014026439) HSP 1 Score: 112 bits (281), Expect = 3.890e-26 Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMGK 435
FP V +F + L FE TVL+ W +W FP PPL VLA VE AL HD +L +H GV A Y WPLL ++F+EVL+R WLRLFD + + A LP A A A++ AR ALL L ED FF + VD+G+
Sbjct: 511 FPFVKLFQNNQLVCFEVLATVLVNWCSRWFEYFPNPPLNVLACVENALAHHDHQLLQHFVEHGVTAQVYAWPLLETLFSEVLTRDEWLRLFDWVLSRPPA----FLP-AVAAAYSSCARGALLRLTQLEDFQFFFHHRGGVDVGR 650
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A6S8ANP3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8ANP3_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.270e-26 Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
FP V VF ++ AFETAM+V+ W W ++P PP+ VL V+ L+ ++RL HL G+ A Y WPLL SVF+EVLS+ WL +DHL D+ GLLP A A A+ + +LL+L + D+ FFRRQ+ +D+
Sbjct: 31 FPFVKVFHRYEMCAFETAMSVIFNWCSSWFISYPHPPVHVLEGVDEVLKLCNKRLFTHLQDCGLTAETYAWPLLCSVFSEVLSKDEWLIFWDHLFTNP--DKPGLLP-ATAAAYCLYFSNSLLSLNRKCDLEKFFRRQNPLDV 170
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A7S2WC53_9STRA (TBC1 domain family member 31 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC53_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.950e-26 Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
FP V V+G D+L AFET MTVL R W +FP P+ VLA +E L D+ L H + +GV +Y W LLRS+F+EVL++ WL+L+DH+ D++ L A VA+ R LL+L EDV FFR+Q+ +D+
Sbjct: 570 FPFVKVYGNDELSAFETVMTVLFRVCTFWFESFPHAPVFVLARIEKLLERTDKHLLNHFTNIGVTNESYAWVLLRSMFSEVLTKGEWLKLWDHVVFYL--DKSPHLLEVACVAYLRYFRNTLLSLRRGEDVAAFFRQQNPIDV 710
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: Q4RFH4_TETNG (TBC1 domain family member 31 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RFH4_TETNG) HSP 1 Score: 109 bits (272), Expect = 6.150e-25 Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDM 429
FP V +F + L FE TV++ W + W FP PPL +LA+VE L HDR+L +HL GV + Y WPLL ++F+EVL+R WLRLFD + + A + A VA+ R+ LL + D FFR ++ +DM
Sbjct: 565 FPFVKLFQNNPLLCFEMLATVIVNWCQHWFEYFPNPPLNILAMVENVLAHHDRKLLQHLVSCGVTSQVYAWPLLETLFSEVLTRDEWLRLFDSVFSNHPA-----FLLMACVAYVTCCRQLLLKSTQKRDFEYFFRHRNTMDM 702
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A8M1KEN4_CLUHA (TBC1 domain family member 31 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KEN4_CLUHA) HSP 1 Score: 107 bits (268), Expect = 2.190e-24 Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
FP V +F + L FE TV++ W + W FP PPL VL++VE L HD+ L +HL + + Y WPLL+++F+EVL+R WLRLFD++ + A + A VA+ R LLTL RED FF ++ D+G
Sbjct: 498 FPFVKLFQNNPLICFEVVATVIVNWCQHWFEYFPNPPLNVLSMVENVLAHHDKELLQHLVDCHITSQLYAWPLLQTLFSEVLTRDEWLRLFDNVFSNHTA-----FLLVAVVAYVTCCRVQLLTLAFREDFEYFFHHRNNFDIG 636
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: UPI001C0872FA (TBC1 domain family member 31 isoform X1 n=4 Tax=Alosa TaxID=34772 RepID=UPI001C0872FA) HSP 1 Score: 107 bits (267), Expect = 2.980e-24 Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
FP V +F + L FE TV++ WG+ W FP PPL VL++VE L HD+ L +HL + + Y WPLL ++F+EVL+R WLRLFD++ + A + A VA+ R LL L RED FF ++ D+G
Sbjct: 498 FPFVKLFQNNPLICFEVVATVIVSWGQHWFEYFPNPPLNVLSMVENVLAHHDKELLQHLVDCRITSQLYVWPLLETLFSEVLTRDEWLRLFDNVFSNHPA-----FLLVAVVAYVTCCRAQLLMLTFREDFEYFFHHRNNFDIG 636
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Match: A0A6P8THW0_GYMAC (TBC1 domain family member 31 n=3 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8THW0_GYMAC) HSP 1 Score: 107 bits (266), Expect = 4.030e-24 Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1
Query: 1 FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSHDRRLSRHLSRLGVGAAAYGWPLLRSVFTEVLSRKAWLRLFDHLCAGAAADRAGLLPIAAAVAFAVAARRALLTLESREDVGGFFRRQHAVDMG 432
FP V +F + + FE TV++ WG+ W FP PPL +L++ E L HD+ L +HL G+ + Y WPLL ++F+EVL+R+ WLRLFD++ + + L + A VA+ R LL +ED FF ++ +D+G
Sbjct: 494 FPFVKLFQNNPMLCFEVVATVIVNWGQHWFEYFPNPPLNILSMAENVLAHHDKELLQHLVDCGITSQLYVWPLLETLFSEVLTREEWLRLFDNIFS----NHPSFL-LLACVAYITCCREPLLLCSQKEDFEYFFHHRNNLDLG 632 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1202.1 >prot_S-ischiensis_contig1.1202.1 ID=prot_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp FPLVVVFGADDLGAFETAMTVLLRWGRQWLATFPQPPLPVLALVEAALRSback to top mRNA from alignment at S-ischiensis_contig1:8123484..8123918+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1202.1 ID=mRNA_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=435bp|location=Sequence derived from alignment at S-ischiensis_contig1:8123484..8123918+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:8123484..8123918+ >mRNA_S-ischiensis_contig1.1202.1 ID=mRNA_S-ischiensis_contig1.1202.1|Name=mRNA_S-ischiensis_contig1.1202.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig1:8123484..8123918+ (Schizocladia ischiensis KU_0333)back to top |